GTP-Binding Proteins

GTP 结合蛋白
  • 文章类型: Journal Article
    Kisspeptin受体(KISS1R),属于A类肽-GPCR家族,在kisspeptin刺激后对生殖生理的调节中起关键作用,被认为是生殖疾病的有吸引力的药物靶标。这里,我们证明,除了众所周知的Gq/11途径外,KISS1R还可以与Gi/o途径偶联。我们进一步解析了与合成激动剂TAK448结合的KISS1R-Gq和KISS1R-Gi复合物的低温电子显微镜(cryo-EM)结构以及与内源性激动剂KP54结合的KISS1R-Gq复合物的结构。高分辨率结构为其配体识别KISS1R的机制提供了清晰的见解,并且可以促进具有高亲和力的靶向药物的设计以提高治疗效果。此外,结构和功能分析表明胞外环(ECLs)的构象差异,受体的胞内环(ICL),Gα亚基的“波浪形钩子”可能解释了G蛋白偶联对KISS1R信号传导的特异性。
    Kisspeptin receptor (KISS1R), belonging to the class A peptide-GPCR family, plays a key role in the regulation of reproductive physiology after stimulation by kisspeptin and is regarded as an attractive drug target for reproductive diseases. Here, we demonstrated that KISS1R can couple to the Gi/o pathway besides the well-known Gq/11 pathway. We further resolved the cryo-electron microscopy (cryo-EM) structure of KISS1R-Gq and KISS1R-Gi complexes bound to the synthetic agonist TAK448 and structure of KISS1R-Gq complex bound to the endogenous agonist KP54. The high-resolution structures provided clear insights into mechanism of KISS1R recognition by its ligand and can facilitate the design of targeted drugs with high affinity to improve treatment effects. Moreover, the structural and functional analyses indicated that conformational differences in the extracellular loops (ECLs), intracellular loops (ICLs) of the receptor, and the \"wavy hook\" of the Gα subunit may account for the specificity of G protein coupling for KISS1R signaling.
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  • 文章类型: Journal Article
    ADP核糖基化因子样GTP酶2(Arl2)对于控制各种生物体中的线粒体融合和微管组装至关重要。Arl2通过微管生长调节果蝇中神经干细胞的不对称分裂。然而,哺乳动物Arl2在皮质发育过程中的功能尚不清楚。这里,我们证明小鼠Arl2通过调节微管生长在皮质发生中起新的作用,但不是线粒体的功能。Arl2敲低(KD)导致神经祖细胞(NPC)增殖受损和神经元迁移。小鼠NPC中的Arl2KD显着降低了中心体微管的生长和中心体蛋白Cdk5rap2和γ-微管蛋白的离域。此外,Arl2通过使用AlphaFold多聚体的模拟预测与Cdk5rap2物理关联,通过共免疫沉淀和邻近连接测定进行了验证。值得注意的是,Cdk5rap2过表达显着挽救了Arl2KD引起的神经发生缺陷。因此,Arl2通过微管生长通过中心体蛋白Cdk5rap2在小鼠皮质发育中起重要作用。
    ADP ribosylation factor-like GTPase 2 (Arl2) is crucial for controlling mitochondrial fusion and microtubule assembly in various organisms. Arl2 regulates the asymmetric division of neural stem cells in Drosophila via microtubule growth. However, the function of mammalian Arl2 during cortical development was unknown. Here, we demonstrate that mouse Arl2 plays a new role in corticogenesis via regulating microtubule growth, but not mitochondria functions. Arl2 knockdown (KD) leads to impaired proliferation of neural progenitor cells (NPCs) and neuronal migration. Arl2 KD in mouse NPCs significantly diminishes centrosomal microtubule growth and delocalization of centrosomal proteins Cdk5rap2 and γ-tubulin. Moreover, Arl2 physically associates with Cdk5rap2 by in silico prediction using AlphaFold multimer, which was validated by co-immunoprecipitation and proximity ligation assay. Remarkably, Cdk5rap2 overexpression significantly rescues the neurogenesis defects caused by Arl2 KD. Therefore, Arl2 plays an important role in mouse cortical development through microtubule growth via the centrosomal protein Cdk5rap2.
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  • 文章类型: Journal Article
    转谷氨酰胺酶2(TG2)是一种GTP结合酶,蛋白质交联酶已被研究为乳糜泻的治疗靶标,神经系统疾病,和侵袭性癌症。TG2已被建议采用调节其功能的两种构象状态:GTP结合,闭合构象,和钙结合,交联活性开放构象。组成型采用开放构象的TG2突变体对癌细胞具有细胞毒性。因此,结合和稳定TG2开放构象的小分子可以提供一种新的治疗策略。这里,我们研究了TG2,使用静态和时间分辨小角度X射线散射(SAXS)和单粒子冷冻电子显微镜(cryo-EM),以确定负责赋予其生物学效应的构象状态。我们还描述了一种新开发的TG2抑制剂,LM11可有效杀死胶质母细胞瘤细胞,并使用SAXS研究LM11如何影响TG2的构象状态。使用SAXS和低温EM,我们显示鸟嘌呤核苷酸结合并稳定单体闭合构象,而钙结合到可以形成更高阶寡聚体的开放状态。SAXS分析提示组成型采用开放状态的TG2突变体如何通过与野生型TG2的替代机制结合核苷酸。此外,我们使用时间分辨SAXS来显示LM11增加钙结合和稳定开放构象的能力,鸟嘌呤核苷酸是不可逆的,对癌细胞有细胞毒性。一起来看,我们的发现表明,TG2的构象动力学比以前提出的更复杂,并强调了LM11对TG2的构象稳定如何维持TG2处于细胞毒性构象状态。
    Transglutaminase 2 (TG2) is a GTP-binding, protein-crosslinking enzyme that has been investigated as a therapeutic target for Celiac disease, neurological disorders, and aggressive cancers. TG2 has been suggested to adopt two conformational states that regulate its functions: a GTP-bound, closed conformation, and a calcium-bound, crosslinking-active open conformation. TG2 mutants that constitutively adopt an open conformation are cytotoxic to cancer cells. Thus, small molecules that bind and stabilize the open conformation of TG2 could offer a new therapeutic strategy. Here, we investigate TG2, using static and time-resolved small-angle X-ray scattering (SAXS) and single-particle cryoelectron microscopy (cryo-EM), to determine the conformational states responsible for conferring its biological effects. We also describe a newly developed TG2 inhibitor, LM11, that potently kills glioblastoma cells and use SAXS to investigate how LM11 affects the conformational states of TG2. Using SAXS and cryo-EM, we show that guanine nucleotides bind and stabilize a monomeric closed conformation while calcium binds to an open state that can form higher order oligomers. SAXS analysis suggests how a TG2 mutant that constitutively adopts the open state binds nucleotides through an alternative mechanism to wildtype TG2. Furthermore, we use time resolved SAXS to show that LM11 increases the ability of calcium to bind and stabilize an open conformation, which is not reversible by guanine nucleotides and is cytotoxic to cancer cells. Taken together, our findings demonstrate that the conformational dynamics of TG2 are more complex than previously suggested and highlight how conformational stabilization of TG2 by LM11 maintains TG2 in a cytotoxic conformational state.
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    文章类型: Journal Article
    RHOBTB2 was first described as epileptogenic when it presents a missense variant in 2016 and studied more specifically in 2018. It is a gene that causes rare, but potentially severe childhood epileptic encephalopathy. In 2021, research confirmed that heterozygous mutations of RHOBTB2 included other clinical signs besides these encephalopathies. Thus, these infantile epilepsies are mainly associated with highly variable phenotypes, with developmental delay, post-traumatic encephalitis, paroxysmal movement disorders and iconographic brain damage. In this work, after presenting a clinical case, we will recall the role of RhoGTPases on neuronal development. We will then discuss a study which highlighted the neurodevelopmental impact of mutations on the RHOBTB2 gene by carrying out work on Drosophila melanogaster flies. Finally, we will compare the presented clinical case with a literature review.
    Le gène RHOBTB2 est décrit pour la première fois comme épileptogène alors qu’il présente un variant faux-sens en 2016, puis est étudié plus précisément en 2018. Il s’agit d’un gène qui est à l’origine d’encéphalopathies épileptiques infantiles rares, mais pouvant être sévères. En 2021, des recherches ont confirmé que les mutations hétérozygotes de RHOBTB2 englobaient d’autres signes cliniques que ces encéphalopathies. Ainsi, ces épilepsies infantiles sont associées, principalement, avec des phénotypes fortement variables, à un retard développemental, à des encéphalites post-traumatiques, à des troubles paroxystiques des mouvements et à des atteintes iconographiques de l’encéphale. Dans ce travail, après avoir présenté un cas clinique, nous rappellerons le rôle des RhoGTPases sur le développement neuronal. Nous discuterons ensuite d’une étude qui a mis en évidence l’impact neurodéveloppemental de mutations sur le gène RHOBTB2 en réalisant des travaux sur des mouches Drosophila melanogaster. Pour terminer, nous mettrons le cas clinique présenté en parallèle avec une revue de la littérature réalisée par rapport à ce gène.
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  • 文章类型: Journal Article
    胶质母细胞瘤(GBM)是最具侵袭性的癌症之一,以抗氧化剂水平降低为特征。有证据表明,阿魏酸(FA),一种在蔬菜和水果中特别丰富的天然抗氧化剂,可能是GBM治疗的有希望的候选人。由于FA显示出高不稳定性,损害了其治疗应用,它已被封装到纳米结构脂质载体(NLCs)中,以提高其在大脑中的生物利用度。已经证明,组织转谷氨酰胺酶(TG2)是一种参与许多生理和病理过程的多功能蛋白,包括癌症.TG2还参与与转移形成和耐药性相关的GBM。因此,评估TG2的表达水平及其细胞定位对于评估FA对GBM癌症的抗癌作用很重要。我们的结果表明,在U87-MG癌细胞系中用游离FA和FA-NLCs治疗会不同程度地改变TG2的定位和表达水平。在用游离FA处理的细胞中,TG2在细胞质和细胞核中都有表达,虽然用FA-NLCs处理显示该蛋白仅位于胞质溶胶中,发挥其促凋亡作用。因此,我们的数据表明,NLCs中负载的FA可能是一种有前景的天然药物,用于补充目前用于治疗GBM的抗癌药物.
    Glioblastoma (GBM) is one of the most aggressive cancers, characterized by a decrease in antioxidant levels. Evidence has demonstrated that ferulic acid (FA), a natural antioxidant particularly abundant in vegetables and fruits, could be a promising candidate for GBM treatment. Since FA shows a high instability that compromises its therapeutic application, it has been encapsulated into Nanostructured Lipid Carriers (NLCs) to improve its bioavailability in the brain. It has been demonstrated that tissue transglutaminase (TG2) is a multi-functional protein implicated in many physiological and pathological processes, including cancer. TG2 is also involved in GBM correlated with metastasis formation and drug resistance. Therefore, the evaluation of TG2 expression levels and its cellular localization are important to assess the anti-cancer effect of FA against GBM cancer. Our results have demonstrated that treatment with free FA and FA-NLCs in the U87-MG cancer cell line differently modified TG2 localization and expression levels. In the cells treated with free FA, TG2 appeared expressed both in the cytosol and in the nucleus, while the treatment with FA-NLCs showed that the protein is exclusively localized in the cytosol, exerting its pro-apoptotic effect. Therefore, our data suggest that FA loaded in NLCs could represent a promising natural agent for supplementing the current anti-cancer drugs used for the treatment of GBM.
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  • 文章类型: Journal Article
    许多神经递质受体通过将GDP交换为GTP来激活G蛋白。中间无核苷酸状态已被表征,主要是由于其固有的不稳定性。在这里,我们描述了与人类罕见神经系统疾病相关的G蛋白变体。GαoK46E具有与GDP和GTP的磷酸盐基团冲突的电荷逆转。如预期,纯化的蛋白质与鸟嘌呤核苷酸的结合能力较差,但仍保留对G蛋白βγ亚基的野生型亲和力。在具有生理核苷酸浓度的细胞中,GαoK46E与受体和Gβγ形成稳定的复合物,阻碍效应器激活。Further,我们证明了突变体可以很容易地与多巴胺结合的D2受体复合纯化,并使用低温电子显微镜来确定结构,包括Gαo的两个域,没有核苷酸或稳定的纳米抗体。这些发现揭示了G蛋白激活第一步的分子基础,为神经系统疾病建立机制基础,提供了一种简化的策略来确定受体G蛋白结构,和检测细胞中高亲和力激动剂结合的方法。
    Many neurotransmitter receptors activate G proteins through exchange of GDP for GTP. The intermediate nucleotide-free state has eluded characterization, due largely to its inherent instability. Here we characterize a G protein variant associated with a rare neurological disorder in humans. GαoK46E has a charge reversal that clashes with the phosphate groups of GDP and GTP. As anticipated, the purified protein binds poorly to guanine nucleotides yet retains wild-type affinity for G protein βγ subunits. In cells with physiological concentrations of nucleotide, GαoK46E forms a stable complex with receptors and Gβγ, impeding effector activation. Further, we demonstrate that the mutant can be easily purified in complex with dopamine-bound D2 receptors, and use cryo-electron microscopy to determine the structure, including both domains of Gαo, without nucleotide or stabilizing nanobodies. These findings reveal the molecular basis for the first committed step of G protein activation, establish a mechanistic basis for a neurological disorder, provide a simplified strategy to determine receptor-G protein structures, and a method to detect high affinity agonist binding in cells.
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  • 文章类型: Journal Article
    开发可能与膜胆固醇增加相关的疾病状态的最佳疗法需要对药物靶标的脂质调节有更好的分子理解。1型胆囊收缩素受体(CCK1R)激动剂的作用受到膜胆固醇增加的影响,增强配体结合和减少钙信号,而密切相关的CCK2R的激动剂作用则没有。在这项工作中,我们确定了一组嵌合的人CCK1R/CCK2R突变,交换这2个受体的胆固醇敏感性,在CHO和HEK-293模型细胞系中表达时提供强大的工具来探索机制。静态,低能量,突变CCK1R构建体的高分辨率结构,稳定在与G蛋白的复合物中,没有实质性的不同,这表明受体动力学的改变是功能改变的关键。我们发现,CCK受体螺旋束构象的胆固醇依赖性动态变化会影响细胞外表面的配体结合和胞质表面的G蛋白偶联,以及它们在刺激-反应耦合中的相互关系。这为潜在的变构调节剂提供了理想的设置以校正膜胆固醇对CCK1R的负面影响。
    Development of optimal therapeutics for disease states that can be associated with increased membrane cholesterol requires better molecular understanding of lipid modulation of the drug target. Type 1 cholecystokinin receptor (CCK1R) agonist actions are affected by increased membrane cholesterol, enhancing ligand binding and reducing calcium signaling, while agonist actions of the closely related CCK2R are not. In this work, we identified a set of chimeric human CCK1R/CCK2R mutations that exchange the cholesterol sensitivity of these 2 receptors, providing powerful tools when expressed in CHO and HEK-293 model cell lines to explore mechanisms. Static, low energy, high-resolution structures of the mutant CCK1R constructs, stabilized in complex with G protein, were not substantially different, suggesting that alterations to receptor dynamics were key to altered function. We reveal that cholesterol-dependent dynamic changes in the conformation of the helical bundle of CCK receptors affects both ligand binding at the extracellular surface and G protein coupling at the cytosolic surface, as well as their interrelationships involved in stimulus-response coupling. This provides an ideal setting for potential allosteric modulators to correct the negative impact of membrane cholesterol on CCK1R.
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  • 文章类型: Journal Article
    鸟苷酸结合蛋白5(GBP5)是一种新兴的免疫成分,因其参与自身免疫性疾病而受到越来越多的认可。特别是炎症性肠病(IBD)。IBD是一种涉及胃肠道炎症的复杂疾病。这里,我们使用Gbp5敲除小鼠和暴露于葡聚糖硫酸钠(DSS)的野生型小鼠建立慢性结肠炎模型,探索了GBP5的功能意义。我们发现Gbp5缺乏可保护小鼠免受DSS诱导的慢性结肠炎。结肠组织的转录组分析显示,与相应的野生型小鼠相比,Gbp5敲除小鼠的免疫反应降低。我们进一步观察到,在反复暴露DSS后,肠道微生物群发生了改变,在野生型小鼠和Gbp5基因敲除小鼠中;然而,Gbp5基因敲除小鼠的肠道微生物健康指数较高。值得注意的是,一种益生菌鼠类共生细菌,Dubosiella,主要富集在这些敲除小鼠中。我们的研究结果表明,GBP5在促进肠道炎症和生态失调中起重要作用。因此,在IBD治疗方面,预防可能值得探索。
    Guanylate binding protein 5 (GBP5) is an emerging immune component that has been increasingly recognized for its involvement in autoimmune diseases, particularly inflammatory bowel disease (IBD). IBD is a complex disease involving inflammation of the gastrointestinal tract. Here, we explored the functional significance of GBP5 using Gbp5 knockout mice and wildtype mice exposed to dextran sulfate sodium (DSS) to generate chronic colitis model. We found that Gbp5 deficiency protected mice from DSS-induced chronic colitis. Transcriptome analysis of colon tissues showed reduced immune responses in Gbp5 knockout mice compared to those in corresponding wildtype mice. We further observed that after repeated DSS exposure, the gut microbiota was altered, both in wildtype mice and Gbp5 knockout mice; however, the gut microbiome health index was higher in the Gbp5 knockout mice. Notably, a probiotic murine commensal bacterium, Dubosiella, was predominantly enriched in these knockout mice. Our findings suggest that GBP5 plays an important role in promoting inflammation and dysbiosis in the intestine, the prevention of which might therefore be worth exploring in regards to IBD treatment.
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  • 文章类型: Journal Article
    自身免疫的体外模型受到无法与复杂的组织驻留免疫微环境一起培养受影响上皮的限制。乳糜泻(CeD)是一种自身免疫性疾病,其中饮食中的谷蛋白衍生肽与主要组织相容性复合物(MHC)II类人白细胞抗原分子(HLA)-DQ2或HLA-DQ8结合,以引发免疫介导的十二指肠粘膜损伤1-4。这里,我们从内窥镜活检的完整片段中产生了气-液界面(ALI)十二指肠类器官,这些片段将上皮与天然间质和组织驻留的免疫细胞作为一个单位而不需要重建.ALI类器官跨越T细胞的免疫多样性,B和浆细胞,自然杀伤(NK)细胞和髓样细胞,具有广泛的T细胞和B细胞受体库。HLA-DQ2.5限制性谷蛋白肽选择性地诱导来自CeD患者的HLA-DQ2.5表达器官的上皮破坏,这通过阻断MHC-II或NKG2C/D而被拮抗。面筋蛋白表位刺激了淋巴和骨髓亚群中的CeD类器官免疫网络反应,同时产生了抗谷氨酰胺转氨酶2(TG2)自身抗体。CeD类器官的功能研究表明,白介素7(IL-7)是一种谷蛋白诱导的致病调节剂,可调节CD8T细胞NKG2C/D的表达,并且对于上皮破坏是必需和充分的。此外,与无麸质饮食的缓解疾病相比,活动性CeD的患者活检中内源性IL-7明显上调,主要在固有层间质。通过保留不同免疫群体的上皮,这种人体外CeD模型概括了谷蛋白依赖性病理学,能够进行机械研究,并为自身免疫的类器官建模建立了原理证明。
    In vitro models of autoimmunity are constrained by an inability to culture affected epithelium alongside the complex tissue-resident immune microenvironment. Coeliac disease (CeD) is an autoimmune disease in which dietary gluten-derived peptides bind to the major histocompatibility complex (MHC) class II human leukocyte antigen molecules (HLA)-DQ2 or HLA-DQ8 to initiate immune-mediated duodenal mucosal injury1-4. Here, we generated air-liquid interface (ALI) duodenal organoids from intact fragments of endoscopic biopsies that preserve epithelium alongside native mesenchyme and tissue-resident immune cells as a unit without requiring reconstitution. The immune diversity of ALI organoids spanned T cells, B and plasma cells, natural killer (NK) cells and myeloid cells, with extensive T-cell and B-cell receptor repertoires. HLA-DQ2.5-restricted gluten peptides selectively instigated epithelial destruction in HLA-DQ2.5-expressing organoids derived from CeD patients, and this was antagonized by blocking MHC-II or NKG2C/D. Gluten epitopes stimulated a CeD organoid immune network response in lymphoid and myeloid subsets alongside anti-transglutaminase 2 (TG2) autoantibody production. Functional studies in CeD organoids revealed that interleukin-7 (IL-7) is a gluten-inducible pathogenic modulator that regulates CD8+ T-cell NKG2C/D expression and is necessary and sufficient for epithelial destruction. Furthermore, endogenous IL-7 was markedly upregulated in patient biopsies from active CeD compared with remission disease from gluten-free diets, predominantly in lamina propria mesenchyme. By preserving the epithelium alongside diverse immune populations, this human in vitro CeD model recapitulates gluten-dependent pathology, enables mechanistic investigation and establishes a proof of principle for the organoid modelling of autoimmunity.
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  • 文章类型: Editorial
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