%0 Journal Article %T A human autoimmune organoid model reveals IL-7 function in coeliac disease. %A Santos AJM %A van Unen V %A Lin Z %A Chirieleison SM %A Ha N %A Batish A %A Chan JE %A Cedano J %A Zhang ET %A Mu Q %A Guh-Siesel A %A Tomaske M %A Colburg D %A Varma S %A Choi SS %A Christophersen A %A Baghdasaryan A %A Yost KE %A Karlsson K %A Ha A %A Li J %A Dai H %A Sellers ZM %A Chang HY %A Dunn JCY %A Zhang BM %A Mellins ED %A Sollid LM %A Fernandez-Becker NQ %A Davis MM %A Kuo CJ %J Nature %V 632 %N 8024 %D 2024 Aug 24 %M 39048815 %F 69.504 %R 10.1038/s41586-024-07716-2 %X In vitro models of autoimmunity are constrained by an inability to culture affected epithelium alongside the complex tissue-resident immune microenvironment. Coeliac disease (CeD) is an autoimmune disease in which dietary gluten-derived peptides bind to the major histocompatibility complex (MHC) class II human leukocyte antigen molecules (HLA)-DQ2 or HLA-DQ8 to initiate immune-mediated duodenal mucosal injury1-4. Here, we generated air-liquid interface (ALI) duodenal organoids from intact fragments of endoscopic biopsies that preserve epithelium alongside native mesenchyme and tissue-resident immune cells as a unit without requiring reconstitution. The immune diversity of ALI organoids spanned T cells, B and plasma cells, natural killer (NK) cells and myeloid cells, with extensive T-cell and B-cell receptor repertoires. HLA-DQ2.5-restricted gluten peptides selectively instigated epithelial destruction in HLA-DQ2.5-expressing organoids derived from CeD patients, and this was antagonized by blocking MHC-II or NKG2C/D. Gluten epitopes stimulated a CeD organoid immune network response in lymphoid and myeloid subsets alongside anti-transglutaminase 2 (TG2) autoantibody production. Functional studies in CeD organoids revealed that interleukin-7 (IL-7) is a gluten-inducible pathogenic modulator that regulates CD8+ T-cell NKG2C/D expression and is necessary and sufficient for epithelial destruction. Furthermore, endogenous IL-7 was markedly upregulated in patient biopsies from active CeD compared with remission disease from gluten-free diets, predominantly in lamina propria mesenchyme. By preserving the epithelium alongside diverse immune populations, this human in vitro CeD model recapitulates gluten-dependent pathology, enables mechanistic investigation and establishes a proof of principle for the organoid modelling of autoimmunity.