Fungal diversity

真菌多样性
  • 文章类型: Journal Article
    Chytrids,经常被其他真菌掩盖,当我们解开根草中围绕新物种的奥秘并探索其独特特征时,请占据中心舞台。在更广泛的食糜中,它们的意义不仅在于它们作为分解者的角色,还在于它们作为水生生态系统中养分循环的关键参与者,如寄生虫和昆虫。从泰国各省收集的土壤和水生样本,产生了根瘤菌(Chytridiomcota)的新物种,其中一些扩展了以前的单一物种属。我们的研究结合了形态学和系统发育方法,使我们能够将这些分离株识别为不同的分类群。新型分离株具有鲜明的特点,例如孢子囊和游动孢子的大小和形状的变化,在某种程度上区别于描述的分类群。为了确认物种的新颖性,我们使用最大似然和贝叶斯方法进行了稳健的系统发育分析。结果为根茎中存在八个不同的谱系提供了强有力的支持,代表我们新发现的物种。此外,我们使用泊松树过程来推断推定的物种边界,并为建立新的根瘤菌物种提供补充证据。通过精心探索它们的形态特征和遗传组成,我们通过描述Alphamycesthailandicus来扩展真菌多样性的已知目录,尤金酵母,水生动物Gorgonomyces,G.Chiangraiensis,G.Limnicus,平氟门巴氏酵母,海产Terramycesaquatica,和Flumenensis,也为这一秩序的复杂性提供了有价值的见解。这种新发现的知识不仅丰富了我们对根霉的理解,而且还为真菌学的更广泛领域做出了重大贡献。解决真菌物种文献中的关键差距。这八个新物种的鉴定和表征标志着朝着更全面地理解真菌生态系统及其重要作用迈出了值得注意的一步。
    Chytrids, often overshadowed by their other fungal counterparts, take center stage as we unravel the mysteries surrounding new species within Rhizophydiales and explore their unique characteristics. In the broader spectrum of chytrids, their significance lies not only in their roles as decomposers but also as key players in nutrient cycling within aquatic ecosystems as parasites and saprobes. Baited soil and aquatic samples collected from various provinces of Thailand, yielded new species of the Rhizophydiales (Chytridiomycota), some of which expanded previously single species genera. Our investigation incorporated a combination of morphological and phylogenetic approaches, enabling us to identify these isolates as distinct taxa. The novel isolates possess distinguishing features, such as variations in size and shape of the sporangium and zoospores, that somewhat differentiate them from described taxa. To confirm the novelty of the species, we employed robust phylogenetic analyses using maximum likelihood and bayesian methods. The results provided strong support for the presence of eight distinct lineages within the Rhizophydiales, representing our newly discovered species. Furthermore, we employed Poisson Tree Processes to infer putative species boundaries and supplement evidence for the establishment of our new Rhizophydiales species. By meticulously exploring their morphological characteristics and genetic makeup, we expand the known catalogue of fungal diversity by describing Alphamyces thailandicus, Angulomyces ubonensis, Gorgonomyces aquaticus, G. chiangraiensis, G. limnicus, Pateramyces pingflumenensis, Terramyces aquatica, and T. flumenensis and also provide valuable insights into the intricacies of this order. This newfound knowledge not only enriches our understanding of Rhizophydiales but also contributes significantly to the broader field of mycology, addressing a critical gap in the documentation of fungal species. The identification and characterization of these eight novel species mark a noteworthy stride towards a more comprehensive comprehension of fungal ecosystems and their vital role.
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  • 文章类型: Journal Article
    丛枝(AM)和外生菌根(EcM)树之间的差异强烈影响森林生态系统过程,部分原因是它们对腐生真菌群落的影响。Ericoid菌根(ErM)灌木也可能会影响腐殖质群落,因为它们可以通过减慢分解速率和加剧氮限制来塑造养分循环。我们调查了有或没有共同的林下ErM灌木的成对子图中腐生和EcM真菌群落的深度分布,山月桂树(KalmialatifoliaL.),通过从有机物质分析土壤,在温带森林中跨越AM到EcM树的优势梯度,上部矿物(0-10厘米),和较低的矿物(30厘米的累积深度)层。K.latifolia的存在与腐生和外生菌根群落的分类学和功能组成密切相关。当存在这种ErM灌木物种时,Oa地平线上的腐化丰富度一直较低。然而,在AM树为主的地块中,ErM灌木的存在与腐生的相对丰度较高有关。鉴于EcM树抑制了腐生群落的多样性和相对丰度,我们的结果表明,在评估植物菌根协会对地下社区的影响时,可能需要分别考虑ErM灌木和EcM树。
    Differences between arbuscular (AM) and ectomycorrhizal (EcM) trees strongly influence forest ecosystem processes, in part through their impact on saprotrophic fungal communities. Ericoid mycorrhizal (ErM) shrubs likely also impact saprotrophic communities given that they can shape nutrient cycling by slowing decomposition rates and intensifying nitrogen limitation. We investigated the depth distributions of saprotrophic and EcM fungal communities in paired subplots with and without a common understory ErM shrub, mountain laurel (Kalmia latifolia L.), across an AM to EcM tree dominance gradient in a temperate forest by analyzing soils from the organic, upper mineral (0-10 cm), and lower mineral (cumulative depth of 30 cm) horizons. The presence of K. latifolia was strongly associated with the taxonomic and functional composition of saprotrophic and ectomycorrhizal communities. Saprotrophic richness was consistently lower in the Oa horizon when this ErM shrub species was present. However, in AM tree dominated plots, the presence of the ErM shrub was associated with a higher relative abundance of saprotrophs. Given that EcM trees suppress both the diversity and relative abundance of saprotrophic communities, our results suggest that separate consideration of ErM shrubs and EcM trees may be necessary when assessing the impacts of plant mycorrhizal associations on belowground communities.
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  • 文章类型: Journal Article
    持续种植烟草会造成严重的土壤健康问题,这可能会导致细菌土壤变成真菌土壤。为研究不同轮作条件下植烟土壤真菌群落的多样性和丰富度,本研究设置了三种处理方法:CK(烟草连作);B(大麦-烟草轮作)和R(油菜-烟草轮作)。这项研究的结果表明,与其他作物的轮作显着降低了土壤真菌OTUs,也降低了社区的丰富性,均匀度,真菌群落的多样性和覆盖率。其中,B下降最多。在对真菌群落组成和结构的分析中,结果发现,植物病原菌的比例从CK的19.67%下降到B的5.63%,这大大降低了土传疾病的可能性。在土壤环境因子与真菌群落的相关性分析中,结果发现,丝草科与TP和AP有很强的相关性,与TK和AK有很强的相关性。NO3--N和NH4+-N是与真菌群落相关性最强的两个环境因子。本研究结果表明,与其他作物轮作减缓了植烟土壤中土壤真菌的生长过程,改变了土壤真菌群落的优势种。同时,轮作通过改变土壤理化性质改变了土壤真菌群落的多样性和丰富度。
    Continuous cultivation of tobacco could cause serious soil health problems, which could cause bacterial soil to change to fungal soil. In order to study the diversity and richness of fungal community in tobacco-growing soil under different crop rotation, three treatments were set up in this study: CK (tobacco continuous cropping); B (barley-tobacco rotation cropping) and R (oilseed rape-tobacco rotation cropping). The results of this study showed that rotation with other crops significantly decreased the soil fungal OTUs, and also decreased the community richness, evenness, diversity and coverage of fungal communities. Among them, B decreased the most. In the analysis of the composition and structure of the fungal community, it was found that the proportion of plant pathogens Nectriaceae decreased from 19.67% in CK to 5.63% in B, which greatly reduced the possibility of soil-borne diseases. In the analysis of the correlation between soil environmental factors and fungal communities, it was found that Filobasidiaceae had a strong correlation with TP and AP, and Erysiphaceae had a strong correlation with TK and AK. NO3--N and NH4+-N were the two environmental factors with the strongest correlation with fungal communities. The results of this study showed that rotation with other crops slowed down the process of soil fungi in tobacco-growing soil and changed the dominant species of soil fungi community. At the same time, crop rotation changed the diversity and richness of soil fungal community by changing the physical and chemical properties of soil.
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  • 文章类型: Journal Article
    内生真菌,促进植物共同进化的关键,显著促进植物生长,抗应力,和环境适应性。尽管它们很重要,寄主植物中茎内生真菌(SEF)的空间分布特征仍然很差。这里,我们采用高通量测序方法,在区域范围内对毛竹SEF群落进行了比较分析.我们的发现表明,整个SEF社区绝大多数由子囊门成员主导,占85.9%,其次是担子菌,占13.9%,并且整个毛竹SEF群落中的α多样性在采样点之间保持相对一致。然而,在条件丰富的分类群(CAT)中观察到显著的变化,有条件稀有或丰富的分类群(CRAT),和条件稀有类群(CRT)。气候因素成为SEF社区分布的主要影响因素,其次是空间距离和茎的化学性质。中性社区建模结果表明,随机和确定性过程在塑造整个SEF社区中都起着作用,确定性过程对CRT亚社区有更强的影响。此外,CRT共现网络表现出更复杂的结构,以相对于CAT和CRAT亚社区的网络间值和程度值较高为特征。这些发现增强了我们对茎真菌内生菌之间的群落组装和生态相互作用的理解,为人类提供利用真菌资源的机会。
    Endophytic fungi, pivotal in facilitating plant co-evolution, significantly enhance plant growth, stress resistance, and environmental adaptability. Despite their importance, the spatial distribution of stem endophytic fungi (SEF) within host plants remains poorly characterized. Here, we employed high-throughput sequencing to conduct a comparative analysis of SEF communities in Mussaenda pubescens on a regional scale. Our findings reveal that whole-SEF communities were overwhelmingly dominated by members of the phylum Ascomycota, accounting for 85.9 %, followed by Basidiomycota at 13.9 %, and that alpha diversity within the whole-SEF community of M. pubescens remains relatively consistent across sampling sites. However, significant variation was observed within conditionally abundant taxa (CAT), conditionally rare or abundant taxa (CRAT), and conditionally rare taxa (CRT). Climatic factors emerged as the primary influence on SEF community distribution, followed by spatial distance and stem chemical properties. Neutral community modeling results suggested that both stochastic and deterministic processes play a role in shaping whole-SEF communities, with deterministic processes having a stronger influence on CRT subcommunities. Furthermore, the CRT co-occurrence network exhibited a more complex structure, characterized by higher values of network betweenness and degree relative to CAT and CRAT subcommunities. These findings enhance our understanding of community assembly and ecological interactions between stem fungal endophytes, presenting opportunities for harnessing fungal resources for the benefit of humanity.
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  • 文章类型: Journal Article
    高岭土矿区的采矿活动导致矿区和附近土壤的生态健康受到破坏,但是对植物根际土壤中真菌群落的影响尚不清楚。三种常见植物(Conyzabonariensis,黄花蒿,选择了高岭土矿区的Dodonaeavisigsa),并使用ITS测序分析了其根际土壤真菌群落。阿尔法多样性指数(Chao1,Shannon,辛普森,观察物种,与非贝乌里矿区相比,不同植物中真菌群落的pielou-e)下降程度不同。β-多样性(PCoA,NMDS)分析表明,高岭土矿区三种植物根际土壤真菌群落与非高岭土矿区对照植物根际土壤真菌群落差异显著,这种分化的程度在植物之间有所不同。对真菌群落组成的分析结果表明,黄花青霉根际真菌中的优势真菌发生了变化,在黄花C.bonariensis和A.annua中,分枝杆菌(属)的比例增加了约20%。观察到D.viscosa中Didymella(属)的比例增加了40%。同时,三种植物根际土壤受到高岭土开采活动的影响,并出现了新的真菌Ochrocladosporium和Plenodomus。样品的预测功能潜力分析表明,与非高岭土开采地区相比,高岭土开采植物的根际真菌群落中生物合成和糖酵解等功能的潜力显着下降。结果表明,重金属和植物种类是影响这些变化的关键因素,这表明,选择能够带来更多真菌的植物可以适应重金属污染,以恢复高岭土矿区的土壤生态。
    Mining activities in the kaolin mining area have led to the disruption of the ecological health of the mining area and nearby soils, but the effects on the fungal communities in the rhizosphere soils of the plants are not clear. Three common plants (Conyza bonariensis, Artemisia annua, and Dodonaea viscosa) in kaolin mining areas were selected and analyzed their rhizosphere soil fungal communities using ITS sequencing. The alpha diversity indices (Chao1, Shannon, Simpson, observed-species, pielou-e) of the fungal communities decreased to different extents in different plants compared to the non-kauri mining area. The β-diversity (PCoA, NMDS) analysis showed that the rhizosphere soil fungal communities of the three plants in the kaolin mine area were significantly differentiated from those of the control plants grown in the non-kaolin mine area, and the extent of this differentiation varied among the plants. The analysis of fungal community composition showed that the dominant fungi in the rhizosphere fungi of C. bonariensis and A. annua changed, with an increase in the proportion of Mycosphaerella (genus) by about 20% in C. bonariensis and A. annua. An increase in the proportion of Didymella (genus) by 40% in D. viscosa was observed. At the same time, three plant rhizosphere soils were affected by kaolin mining activities with the appearance of new fungal genera Ochrocladosporium and Plenodomus. Predictive functional potential analysis of the samples revealed that a significant decrease in the potential of functions such as biosynthesis and glycolysis occurred in the rhizosphere fungal communities of kaolin-mined plants compared to non-kaolin-mined areas. The results show that heavy metals and plant species are the key factors influencing these changes, which suggests that selecting plants that can bring more abundant fungi can adapt to heavy metal contamination to restore soil ecology in the kaolin mining area.
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  • 文章类型: Journal Article
    Teunia,属于Tremellales目的隐球菌科,是分布在全球的植物居住真菌的属。它的成员与不同的植物部分组成协会,包括鲜花,水果,叶子,种子,和树枝。最近的努力旨在探索中国Teunia的多样性,然而,许多地理区域尚未探索。在这项研究中,我们纳入了从福建收集的植物材料中分离出的5株Teunia酵母菌株的结果,贵州和河南省,带有描述,插图,和三个新物种的系统发育分析:T.acericola,从福建叶表面分离出的T.mussaendrae,贵州省和河南省,和从福建省腐烂的木材中获得的清原虫。
    Teunia, belonging to the family Cryptococcaceae of the order Tremellales, is a genus of plant-inhabiting fungi distributed across the globe. Its members form associations with different plant parts, including flowers, fruits, leaves, seeds, and twigs. Recent efforts have aimed to explore the diversity of Teunia in China, however, many geographical regions have not yet been explored. In this study, we included results of five Teunia yeast strains that were isolated from plant materials collected in Fujian, Guizhou and Henan provinces, with descriptions, illustrations, and phylogenetic analyses of three new species: T.acericola, T.mussaendrae isolated from leaf surfaces in Fujian, Guizhou and Henan Provinces, and T.qingyuanensis obtained from rotting wood in Fujian Province.
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  • 文章类型: Journal Article
    研究了桃壳生物炭(PSB)改良剂对羊粪(SM)堆肥的影响。应用了五种不同比例的PSB(0%,2.5%,5%,7.5%,和10%PSB),并命名为T1至T5,并进行了50天的堆肥实验。发现PSB(尤其是7.5%和10%)可以改善堆肥环境,调节微生物和相关酶的活性,促进堆肥的分解。7.5%和10%PSB将堆推进到嗜热阶段,并提高了最高温度,同时与对照相比,发芽指数也增加了1.40和1.39倍。重要的是,10%PSB通过抑制NH3和温室气体的过量释放,有效地保留了60%以上的碳和55%的氮。高比例PSB修正案增加了脱氢酶和纤维素酶的活性,但抑制蛋白酶和脲酶。相关结果表明,PSB改变了关键细菌属,与环境因素的相关性更强,分别为7.5%和10%。因此,7.5%和10%的桃壳生物炭可以作为适当的比例来改善堆肥条件。
    The effect of peach shell biochar (PSB) amendment on sheep manure (SM) composting was investigated. Five different ratios of PSB were applied (0%, 2.5%, 5%, 7.5%, and 10% PSB), and named T1 to T5, and run 50 days of composting experiment. It was found that PSB (especially 7.5% and 10%) could improve the compost environment, regulate the activity of microorganisms and related enzymes, and promote the decomposition of compost. 7.5% and 10% PSB advanced the heap into the thermophilic stage and increased the maximum temperature, while also increasing the germination index by 1.40 and 1.39 times compared to control. Importantly, 10% PSB effectively retained more than 60% of carbon and 55% of nitrogen by inhibiting the excess release of NH3 and greenhouse gases. High proportion PSB amendment increased the activity of dehydrogenase and cellulase, but inhibited protease and urease. The correlation results indicated that PSB changed the key bacterial genus, and there was a stronger association with environmental factors at 7.5% and 10%. Therefore, 7.5% and 10% peach shell biochar can be used as appropriate proportions to improve composting conditions.
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  • 文章类型: Journal Article
    从位于Nam河流域内的三个采样点获得145种真菌分离物,位于韩国南部地区。通过ITS序列分析,真菌分离株包括55种子囊菌和11种担子菌。子囊菌的55种完全属于Pezizomcotina门,包括33种杆菌属,欧洲真菌6种,和16种梭菌。关于它们的植物致病性,对真菌穿透固体培养基的能力的调查显示,黑孢菌表现出最高的生长,其次是假雌蕊,各种弯孢菌,Diaporthe物种,和链格孢菌.将这种渗透能力与真菌致病性相关联的进一步研究被认为是必要的。在10种具有穿透能力的真菌中,对它们降解生物聚合物的能力的检查表明,两株D.phaseolorum表现出异常的聚合物降解。这些菌株在分解孔雀石绿和结晶紫方面表现出显著的能力,两种顽固的染料。这项研究强调了在淡水环境中真菌多样性的潜在利用,作为解决淡水污染问题的基础方法。
    145 fungal isolates were obtained from three sampling sites situated within the Nam River basin, located in the southern region of South Korea. Through ITS sequence analysis, the fungal isolates were identified to comprise 55 species of ascomycetes and 11 species of basidiomycetes. The 55 species of ascomycetes exclusively belong to the phylum Pezizomycotina, comprising 33 species of Dothideomycetes, 6 species of Eurotiomycetes, and 16 species of Sordariomycetes. Regarding their plant pathogenicity, an investigation into the fungi\'s ability to penetrate solid media revealed Nigrospora chinensis as displaying the highest growth, followed by Pseudopestalotiopsis theae, various Curvularia species, Diaporthe species, and Alternaria alternata. Further research associating this penetration ability with fungal pathogenicity is deemed necessary. Among the 10 fungal species exhibiting penetration abilities, an examination of their capability to degrade biological polymers revealed that two strains of D. phaseolorum displayed exceptional polymer degradation. These strains exhibited remarkable abilities in decomposing malachite green and crystal violet, both recalcitrant dyes. This study underscores the potential utilization of fungal diversity in freshwater environments as a foundational approach to address freshwater pollution issues.
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  • 文章类型: Journal Article
    这项研究为空气中真菌的浓度提供了重要的见解,环境参数,以及泰国古代石庙的大气污染。根据形态特征鉴定了空气传播真菌。空气传播的真菌,气象参数,在每个采样事件期间同时评估大气污染物,评估室内/室外比率。流行属包括青霉属(14.36%),曲霉菌(10.94%),枝孢菌(10.74%),根霉(6.31%),镰刀菌(5.90%),真菌平均浓度为4884.46±724.79CFU/m3。在确定的64种空气传播真菌中,有18种真菌是众所周知的严重病原体,不仅导致结构恶化,而且对人类健康也有贡献。观察到室内和室外环境之间以及不同景观之间的显着差异,特别是对于PM10(范围为43.47至121.31µg/m3)和PM2.5(范围为29.59至89.60µg/m3),密集的焚香被认为是室内大气污染的主要来源。历史寺庙,特别是在城市地区,被确定为空气传播真菌的重要水库。气象参数与污染物之间的相关性显示出很强的相关性。此外,主成分分析(PCA)和聚类分析阐明了空气中真菌浓度和污染的不同模式。本研究分析了环境因素,污染物,空气传播的真菌,以及2020年7月至2021年3月的地理差异。了解流行的属,空气传播的真菌浓度,病原物种,生物恶化,和环境动态提供了改善室内空气质量和减轻全球考古建筑中空气传播真菌污染的策略。
    This study provided crucial insights into the concentrations of airborne fungi, environmental parameters, and atmospheric pollution in Thailand\'s ancient stone temples. Airborne fungi were identified based on morphological characteristics. Airborne fungi, meteorological parameters, and atmospheric pollutants concurrently assessed during each sampling event, evaluating indoor/outdoor ratio. Prevalent genera included Penicillium (14.36%), Aspergillus (10.94%), Cladosporium (10.74%), Rhizopus (6.31%), and Fusarium (5.90%), with an average fungi concentration of 4884.46 ± 724.79 CFU/m3. Eighteen fungal species out of the 64 airborne fungi identified were well-known serious pathogenic agents, contributing not only to structural deterioration but also to human health. Significant variations were observed between indoor and outdoor environments and across diverse landscapes, particularly for PM10 (ranging from 43.47 to 121.31 µg/m3) and PM2.5 (ranging from 29.59 to 89.60 µg/m3), with intensive incense burning identified as a prominent source of indoor atmospheric pollution. Historical temples, particularly situated in urban areas, were identified as significant reservoirs of airborne fungi. Correlations between meteorological parameters and pollutants revealed strong associations. Furthermore, principal component analysis (PCA) and cluster analysis elucidated distinct patterns in airborne fungal concentrations and contaminations. This study analyzed environmental factors, pollutants, airborne fungi, and geographical variations from July 2020 to March 2021. Understanding prevalent genera, airborne fungi concentrations, pathogenic species, biodeterioration, and environmental dynamics provided strategies for improving indoor air quality and mitigating airborne fungal contamination in archaeological buildings worldwide.
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  • 文章类型: Journal Article
    味道很浓的大曲,作为发酵剂,在塑造浓香白酒的品质方面发挥着重要作用,大曲中的真菌种类是影响大曲质量的重要因素。因此,我们从七个不同的来源选择了强烈风味的大曲,以研究真菌组成以及真菌组成对理化性质和挥发性有机化合物(VOCs)的影响。发现真菌组成影响大曲的理化性质。具体来说,Rhizomucor之间有积极的联系,根霉,热细菌,和液化活性以及曲霉与发酵活性之间的正相关。此外,酯化活性和热细菌之间的关系,Rhizomucor,曲霉菌,Pichia,和酵母菌被发现是阳性的。曲霉菌对大曲中VOCs的影响,Issatchenkia,Pichia,和热曲。Issatchenkia与苯乙醇以及曲霉和十五酸乙酯呈显着正相关,肉豆蔻酸乙酯.毕赤酵母和热曲与苯甲醛和2-呋喃醛呈显著负相关。这项研究加深了我们对VOCs之间关系的理解,微生物群落的物理化学性质,对生产质量较好的强风味大曲具有借鉴意义。
    Strong-flavor Daqu, as a fermentation agent, plays a significant role in shaping the quality of strong-flavor baijius, and fungal species in Daqu are important factors affecting the quality of Daqu. Therefore, we selected strong-flavor Daqu from seven different origins to study the fungal composition and the effects of the fungal composition on the physicochemical properties and volatile organic compounds (VOCs). It was found that the fungal composition influences the physicochemical properties of Daqu. Specifically, there was a positive link between Rhizomucor, Rhizopus, Thermomyces, and liquefying activity and a positive correlation between Aspergillus and fermenting activity. Furthermore, the relationships between esterifying activity and Thermomyces, Rhizomucor, Aspergillus, Pichia, and Saccharomycopsis were found to be positive. The VOCs in Daqu were affected by Aspergillus, Issatchenkia, Pichia, and Thermoascus. Issatchenkia was significantly positively correlated with benzeneethanol as well as Aspergillus and pentadecanoic acid ethyl ester, ethyl myristate. Pichia and Thermoascus were significantly negatively correlated with benzaldehyde and 2-furaldehyde. This study deepens our understanding of the relationship between VOCs, the physicochemical properties with microbial communities, and reference significance for the production of better-quality strong-flavor Daqu.
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