EGF, epidermal growth factor

EGF,表皮生长因子
  • 文章类型: Journal Article
    UNASSIGNED:自体培养的表皮(CE)是克服供体部位缺陷以治疗大面积烧伤的有效方法。然而,自体CE的生产需要3-4周,这阻止了它在严重烧伤的危及生命期间的使用。相比之下,同种异体CE可以提前准备并用作伤口敷料,在施用部位释放几种刺激受体细胞活性的生长因子。通过在受控的温度和湿度条件下干燥CE直到完全除去所有的水并且不存在活细胞来制备干燥的CE。干燥的CE可加速鼠类皮肤缺损模型中的伤口愈合,并且可能是一种新的治疗策略。然而,干燥的CE安全性和有效性尚未在大型动物模型中进行研究。因此,我们使用小型猪模型研究了人类干燥CE在伤口愈合中的安全性和有效性。
    未经鉴定:使用Green方法从供体角质形成细胞制造人CE。三种类型的CE(新鲜,冷冻保存,和干的)准备好了,并且在体外证实了每种CE促进角质形成细胞增殖的能力。将三种CE的提取物添加到接种在12孔板中的角质形成细胞中,并使用WST-8测定评估细胞增殖7天。接下来,我们在小型猪的背部制备了部分厚度的皮肤缺损,并应用了三种类型的人类CE来评估伤口愈合的促进作用。在第4天和第7天,收集苏木精-伊红样本,阿赞,和抗CD31染色以评估上皮形成,肉芽组织,和毛细管形成。
    UNASSIGNED:与对照组相比,含有干燥CE提取物的条件培养基显著增强角质形成细胞增殖(P<0.05)。体内实验表明,人类干燥的CE在第7天显着加速上皮形成,与新鲜CE相同。与对照组比较(P<0.05)。三个CE组类似地影响肉芽形成和新血管形成。
    未经证实:干燥的CE在猪部分厚度皮肤缺损模型中加速上皮化,这表明它可能是一种有效的烧伤治疗方法。需要进行长期随访的临床研究,以评估CE在临床中的适用性。
    UNASSIGNED: Autologous cultured epidermis (CE) is an effective approach for overcoming the deficiency of donor sites to treat extensive burns. However, the production of autologous CE takes 3-4 weeks, which prevents its use during the life-threatening period of severe burns. In contrast, allogeneic CE can be prepared in advance and used as a wound dressing, releasing several growth factors stimulating the activity of recipient cells at the application site. Dried CE is prepared by drying CEs under controlled temperature and humidity conditions until all the water is completely removed and no viable cells are present. Dried CE accelerates wound healing in a murine skin defect model and is potentially a new therapeutic strategy. However, the dried CE safety and efficacy have not yet been studied in large animal models. Therefore, we studied the safety and efficacy of human-dried CE in wound healing using a miniature swine model.
    UNASSIGNED: Human CE was manufactured using Green\'s method from donor keratinocytes. Three types of CEs (Fresh, Cryopreserved, and Dried) were prepared, and the ability of each CE to promote keratinocyte proliferation was confirmed in vitro. Extracts of the three CEs were added to keratinocytes seeded in 12-well plates, and cell proliferation was evaluated using the WST-8 assay for 7 days. Next, we prepared a partial-thickness skin defect on the back of a miniature swine and applied three types of human CE to evaluate wound healing promotion. On days 4 and 7, the specimens were harvested for hematoxylin-eosin, AZAN, and anti-CD31 staining to assess epithelialization, granulation tissue, and capillary formation.
    UNASSIGNED: The conditioned medium containing dried CE extract significantly enhanced keratinocyte proliferation compared to the control group (P < 0.05). In vivo experiments revealed that human-dried CE significantly accelerated epithelialization at day 7 to the same extent as fresh CE, compared to the control group (P < 0.05). The three CE groups similarly affected granulation formation and neovascularization.
    UNASSIGNED: Dried CE accelerated epithelialization in a porcine partial-thickness skin defect model, suggesting that it may be an effective burn treatment alternative. A clinical study with a long-term follow-up is needed to assess the applicability of CEs in clinics.
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  • 文章类型: Journal Article
    细胞外囊泡(EV)是由发挥重要生物学作用的细胞分泌的纳米级或微米级囊泡的统称。间充质干细胞是一类具有自我修复和多向分化潜能的细胞。近年来,大量研究表明,电动汽车,尤其是那些由间充质干细胞分泌的细胞,能促进各种组织的修复和再生,因此,在再生医学中具有巨大的潜力。然而,由于循环系统的快速清除能力,电动汽车几乎无法在特定部位持续发挥作用,以修复目标组织。水凝胶具有良好的生物相容性和松散和多孔结构特性,使其能够作为电动汽车载体,从而延长在某些特定区域的保留时间并减缓电动汽车的释放。当需要电动汽车在特定地点运行时,EV负载的水凝胶可以作为一种极好的方法。在这次审查中,我们首先介绍来源,角色,以及电动汽车的提取和表征方法,并描述其应用现状。然后,我们回顾了不同类型的水凝胶,并讨论了影响其携带和释放电动汽车能力的因素。我们总结了将EV加载到水凝胶中并表征EV加载水凝胶的几种策略。此外,我们讨论了EV负载水凝胶的应用策略,并回顾了它们在组织再生和修复中的具体应用。本文最后总结了电动汽车水凝胶的研究现状,并对未来的研究方向进行了展望,我们希望这将为研究人员提供有希望的想法。
    Extracellular vesicles (EVs) are a collective term for nanoscale or microscale vesicles secreted by cells that play important biological roles. Mesenchymal stem cells are a class of cells with the potential for self-healing and multidirectional differentiation. In recent years, numerous studies have shown that EVs, especially those secreted by mesenchymal stem cells, can promote the repair and regeneration of various tissues and, thus, have significant potential in regenerative medicine. However, due to the rapid clearance capacity of the circulatory system, EVs are barely able to act persistently at specific sites for repair of target tissues. Hydrogels have good biocompatibility and loose and porous structural properties that allow them to serve as EV carriers, thereby prolonging the retention in certain specific areas and slowing the release of EVs. When EVs are needed to function at specific sites, the EV-loaded hydrogels can stand as an excellent approach. In this review, we first introduce the sources, roles, and extraction and characterization methods of EVs and describe their current application status. We then review the different types of hydrogels and discuss factors influencing their abilities to carry and release EVs. We summarize several strategies for loading EVs into hydrogels and characterizing EV-loaded hydrogels. Furthermore, we discuss application strategies for EV-loaded hydrogels and review their specific applications in tissue regeneration and repair. This article concludes with a summary of the current state of research on EV-loaded hydrogels and an outlook on future research directions, which we hope will provide promising ideas for researchers.
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  • 文章类型: Journal Article
    甲状腺癌,作为最常见的内分泌癌症之一,近年来发病率激增。这很可能是由于其传统诊断方式缺乏特异性和准确性,导致甲状腺结节的过度诊断。虽然有几种治疗选择,它们仅限于手术和131I放射治疗,这些治疗具有显著的副作用,因此不能满足恶性程度非常高的未分化甲状腺癌的治疗需求.利用光吸收的光学成像,折射和散射特性,不仅观察细胞的结构和功能,组织,器官,甚至整个有机体来协助诊断,但也可用于进行光学治疗,以实现甲状腺癌的靶向非侵入性和精确治疗。这些筛选的应用,诊断,和治疗,赋予光学成像在甲状腺癌手术导航领域的潜力。在过去的十年里,光学成像在甲状腺癌诊断和治疗中的研究逐年增长,但是没有发表关于这个主题的全面评论。这里,我们回顾了光学成像在甲状腺癌诊断和治疗中应用的关键进展,并讨论了该技术在临床应用中的挑战和潜力。
    Thyroid cancer, as one of the most common endocrine cancers, has seen a surge in incidence in recent years. This is most likely due to the lack of specificity and accuracy of its traditional diagnostic modalities, leading to the overdiagnosis of thyroid nodules. Although there are several treatment options available, they are limited to surgery and 131I radiation therapy that come with significant side effects and hence cannot meet the treatment needs of anaplastic thyroid carcinoma with very high malignancy. Optical imaging that utilizes optical absorption, refraction and scattering properties, not only observes the structure and function of cells, tissues, organs, or even the whole organism to assist in diagnosis, but can also be used to perform optical therapy to achieve targeted non-invasive and precise treatment of thyroid cancer. These applications of screening, diagnosis, and treatment, lend to optical imaging\'s promising potential within the realm of thyroid cancer surgical navigation. Over the past decade, research on optical imaging in the diagnosis and treatment of thyroid cancer has been growing year by year, but no comprehensive review on this topic has been published. Here, we review key advances in the application of optical imaging in the diagnosis and treatment of thyroid cancer and discuss the challenges and potential for clinical translation of this technology.
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  • 文章类型: Journal Article
    脱发,或者脱发,与几种心理社会和医学合并症有关,它仍然是个人和社会的经济负担。脱发可归因于多种机制,并具有多因素倾向,和现有的常规医疗干预措施有几个局限性。因此,目前正在探索再生医学中脱发的几种治疗策略,随着越来越多的证据表明间充质干细胞(MSC)植入,MSC来源的分泌组治疗,血液来源的富含血小板的血浆疗法是潜在的治疗选择。在这次审查中,我们搜查了Cochrane图书馆,MEDLINE(PubMed),EMBASE,和Scopus使用各种术语组合,如“干细胞,\"\"脱发,\"\"脱发,\"\"雄激素性脱发,\"\"男性型脱发,\"\"女性型脱发,\"\"再生头发的生长,细胞疗法,间充质干细胞,“\”MSC衍生的细胞外囊泡,\"\"MSC衍生的外泌体,“和“富血小板血浆”,并总结了最有希望的脱发再生治疗方法。此外,讨论了提高疗效的进一步机会和促进临床应用的创新策略。
    Hair loss, or alopecia, is associated with several psychosocial and medical comorbidities, and it remains an economic burden to individuals and the society. Alopecia is attributable to varied mechanisms and features a multifactorial predisposition, and the available conventional medical interventions have several limitations. Thus, several therapeutic strategies for alopecia in regenerative medicine are currently being explored, with increasing evidence suggesting that mesenchymal stem cell (MSC) implantation, MSC-derived secretome treatment, and blood-derived platelet-rich plasma therapies are potential treatment options. In this review, we searched the Cochrane Library, MEDLINE (PubMed), EMBASE, and Scopus using various combinations of terms, such as \"stem cell,\" \"alopecia,\" \"hair loss,\" \"Androgenetic alopecia,\" \"male-pattern hair loss,\" \"female-pattern hair loss,\" \"regenerative hair growth,\" \"cell therapy,\" \"mesenchymal stem cells,\" \"MSC-derived extracellular vesicles,\" \"MSC-derived exosomes,\" and \"platelet-rich plasma\" and summarized the most promising regenerative treatments for alopecia. Moreover, further opportunities of improving efficacy and innovative strategies for promoting clinical application were discussed.
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  • 文章类型: Journal Article
    瞬时受体电位(TRP)通道是钙(Ca2+)通透性通道的主要类型,这些相关的跨膜和细胞内TRP通道以前被认为主要与心血管和神经元系统的调节有关。如今,然而,越来越多的证据表明,这些TRP通道也负责肿瘤发生和发展,诱导肿瘤侵袭和转移。然而,TRP通道在恶性肿瘤中的总体潜在机制和可能的信号转导途径可能仍然难以捉摸.因此,在这次审查中,我们专注于TRP通道与肿瘤的显着特征之间的联系,例如多药耐药(MDR),转移,凋亡,扩散,逃避免疫监视,以及相关肿瘤微环境的改变。此外,我们还讨论了相关TRP通道在各种形式癌症中的表达和相关抑制剂的疗效。还介绍了各种作用机制的抗癌药物的化学敏感性和潜在的临床应用。此外,对于这种类型的钙通道的干预,提供可能的新的治疗方法来对抗恶性肿瘤将是有启发性的。
    Transient receptor potential (TRP) channels are one primary type of calcium (Ca2+) permeable channels, and those relevant transmembrane and intracellular TRP channels were previously thought to be mainly associated with the regulation of cardiovascular and neuronal systems. Nowadays, however, accumulating evidence shows that those TRP channels are also responsible for tumorigenesis and progression, inducing tumor invasion and metastasis. However, the overall underlying mechanisms and possible signaling transduction pathways that TRP channels in malignant tumors might still remain elusive. Therefore, in this review, we focus on the linkage between TRP channels and the significant characteristics of tumors such as multi-drug resistance (MDR), metastasis, apoptosis, proliferation, immune surveillance evasion, and the alterations of relevant tumor micro-environment. Moreover, we also have discussed the expression of relevant TRP channels in various forms of cancer and the relevant inhibitors\' efficacy. The chemo-sensitivity of the anti-cancer drugs of various acting mechanisms and the potential clinical applications are also presented. Furthermore, it would be enlightening to provide possible novel therapeutic approaches to counteract malignant tumors regarding the intervention of calcium channels of this type.
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  • 文章类型: Journal Article
    蜱传脑炎病毒(TBEV),欧亚大陆医学上最相关的蜱传播黄病毒,针对宿主中枢神经系统,并经常引起严重的脑炎。TBEV诱导的神经发病机制的严重程度是高度细胞类型特异性的,造成这种差异的确切机制尚未完全描述。因此,我们对TBEV体外感染人类原代神经元(高细胞病变效应)和星形胶质细胞(低细胞病变效应)后宿主poly-(A)/miRNA/lncRNA表达的变化进行了综合分析.严重但不轻度的TBEV菌株感染导致较高的神经元死亡率。相比之下,人星形胶质细胞中任何一种TBEV菌株的感染都没有。通过miRNA/mRNA/lncRNA/vd-sRNA网络的计算机预测进行差异表达和剪接分析,发现炎症和免疫应答途径发生了显着变化。TBEVHypr感染神经元的神经系统发育和有丝分裂调节。负责上述现象的候选机制包括通过模仿内源性miRNA的差异表达的miRNA/lncRNA或vd-sRNA对宿主mRNA水平的特异性调节和病毒驱动的宿主前mRNA剪接的调节。我们建议这些因素是在不同细胞系中观察到的两种TBEV菌株的毒力表现差异的原因。这项工作带来了人类星形胶质细胞和神经元转录组变化的第一个复杂的概述在感染过程中由两个不同毒力的TBEV菌株。所得数据可作为进一步研究TBEV-宿主相互作用机制和TBEV发病机理相关过程的起点。
    Tick-borne encephalitis virus (TBEV), the most medically relevant tick-transmitted flavivirus in Eurasia, targets the host central nervous system and frequently causes severe encephalitis. The severity of TBEV-induced neuropathogenesis is highly cell-type specific and the exact mechanism responsible for such differences has not been fully described yet. Thus, we performed a comprehensive analysis of alterations in host poly-(A)/miRNA/lncRNA expression upon TBEV infection in vitro in human primary neurons (high cytopathic effect) and astrocytes (low cytopathic effect). Infection with severe but not mild TBEV strain resulted in a high neuronal death rate. In comparison, infection with either of TBEV strains in human astrocytes did not. Differential expression and splicing analyses with an in silico prediction of miRNA/mRNA/lncRNA/vd-sRNA networks found significant changes in inflammatory and immune response pathways, nervous system development and regulation of mitosis in TBEV Hypr-infected neurons. Candidate mechanisms responsible for the aforementioned phenomena include specific regulation of host mRNA levels via differentially expressed miRNAs/lncRNAs or vd-sRNAs mimicking endogenous miRNAs and virus-driven modulation of host pre-mRNA splicing. We suggest that these factors are responsible for the observed differences in the virulence manifestation of both TBEV strains in different cell lines. This work brings the first complex overview of alterations in the transcriptome of human astrocytes and neurons during the infection by two TBEV strains of different virulence. The resulting data could serve as a starting point for further studies dealing with the mechanism of TBEV-host interactions and the related processes of TBEV pathogenesis.
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  • 文章类型: Journal Article
    未经证实:有效诱导了耳斑点图,内耳的发育起源来自人类多能干细胞(hPSC),为耳部发育和感音神经性听力损失建模提供了一个强大的平台。然而,通过逐步分化方法,hPSC的耳谱系规范能力有限,因为成功的耳细胞分化的关键因素尚未被彻底研究。在这项研究中,我们开发了一种新的分化系统,涉及使用具有信号因子的三维(3D)漂浮培养物,通过hPSC的逐步分化产生耳细胞谱系。
    未经证实:我们在二维(2D)单层培养下将hPSC分化为前位细胞。然后,我们在成纤维细胞生长因子(FGF)的控制下,将诱导的前位细胞转移到3D漂浮培养物中,骨形态发生蛋白(BMP),维甲酸(RA)和WNT信号通路。我们使用免疫细胞化学评估了诱导细胞的特征,定量PCR(qPCR),人口平均,和单细胞RNA-seq(RNA-seq)分析。我们进一步研究了通过定义的转录因子的过表达使耳祖细胞向毛细胞分化的方法。
    UNASSIGNED:我们证明了hPSC衍生的前胎盘细胞在FGF2和RA的3D漂浮培养中获得了分化成后胎盘细胞的潜力。随后WNT信号的激活诱导耳胎盘细胞形成。通过单细胞RNA-seq(scRNA-seq)分析,我们在诱导的球体中鉴定出多个成簇的耳斑状细胞和耳囊标记阳性细胞.此外,诱导的耳细胞显示出通过转录因子ATOH1,POU4F3和GFI1的过表达产生毛细胞样细胞的潜力。
    UNASSIGNED:我们证明了FGF2、RA和WNT信号传导在3D环境中对于来自hPSC的耳谱系细胞的体外分化的关键作用。诱导的耳细胞具有分化成具有立体睫状束和尖端链状结构的内耳毛细胞的能力。该方案将用于感音神经性听力损失和人类内耳发育的体外疾病建模,从而有助于药物筛选和基于干细胞的再生医学。
    UNASSIGNED: Efficient induction of the otic placode, the developmental origin of the inner ear from human pluripotent stem cells (hPSCs), provides a robust platform for otic development and sensorineural hearing loss modelling. Nevertheless, there remains a limited capacity of otic lineage specification from hPSCs by stepwise differentiation methods, since the critical factors for successful otic cell differentiation have not been thoroughly investigated. In this study, we developed a novel differentiation system involving the use of a three-dimensional (3D) floating culture with signalling factors for generating otic cell lineages via stepwise differentiation of hPSCs.
    UNASSIGNED: We differentiated hPSCs into preplacodal cells under a two-dimensional (2D) monolayer culture. Then, we transferred the induced preplacodal cells into a 3D floating culture under the control of the fibroblast growth factor (FGF), bone morphogenetic protein (BMP), retinoic acid (RA) and WNT signalling pathways. We evaluated the characteristics of the induced cells using immunocytochemistry, quantitative PCR (qPCR), population averaging, and single-cell RNA-seq (RNA-seq) analysis. We further investigated the methods for differentiating otic progenitors towards hair cells by overexpression of defined transcription factors.
    UNASSIGNED: We demonstrated that hPSC-derived preplacodal cells acquired the potential to differentiate into posterior placodal cells in 3D floating culture with FGF2 and RA. Subsequent activation of WNT signalling induced otic placodal cell formation. By single-cell RNA-seq (scRNA-seq) analysis, we identified multiple clusters of otic placode- and otocyst marker-positive cells in the induced spheres. Moreover, the induced otic cells showed the potential to generate hair cell-like cells by overexpression of the transcription factors ATOH1, POU4F3 and GFI1.
    UNASSIGNED: We demonstrated the critical role of FGF2, RA and WNT signalling in a 3D environment for the in vitro differentiation of otic lineage cells from hPSCs. The induced otic cells had the capacity to differentiate into inner ear hair cells with stereociliary bundles and tip link-like structures. The protocol will be useful for in vitro disease modelling of sensorineural hearing loss and human inner ear development and thus contribute to drug screening and stem cell-based regenerative medicine.
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  • 文章类型: Journal Article
    众所周知,外源性生物敏感核受体孕烷X受体(PXR)和组成型雄甾烷受体(CAR)的药理激活可增加药物代谢并减少炎症。关于它们在肠道微生物组中的生理功能知之甚少。在这项研究中,我们发现了使用基因工程小鼠调节肠道微生物组丰富度的PXR/CAR的二价功能。PXR或CAR的缺乏增加了微生物的丰富度,两种受体的缺失协同增加了微生物的丰富度。PXR和CAR缺乏增加了促炎细菌螺旋杆菌科和螺杆菌。PXR和CAR的缺乏增加了乳酸菌的相对丰度,具有胆盐水解酶活性,对应于粪便中初级牛磺酸结合胆汁酸(BAs)的减少,这可能导致更高的牛磺酸和未结合的BAs的内部负担,两者都与炎症有关,氧化应激,和细胞毒性。PXR/CAR对肠道微生物组的基础作用不同于这些受体的药理和毒理学激活。确定了常见的PXR/CAR靶向细菌,其中大部分被这些受体抑制。与野生型小鼠相比,hPXR-TG小鼠具有不同的微生物谱。这项研究首次揭示了PXR和CAR对肠道微生物组的基础功能。
    Pharmacological activation of the xenobiotic-sensing nuclear receptors pregnane X receptor (PXR) and constitutive androstane receptor (CAR) is well-known to increase drug metabolism and reduce inflammation. Little is known regarding their physiological functions on the gut microbiome. In this study, we discovered bivalent hormetic functions of PXR/CAR modulating the richness of the gut microbiome using genetically engineered mice. The absence of PXR or CAR increased microbial richness, and absence of both receptors synergistically increased microbial richness. PXR and CAR deficiency increased the pro-inflammatory bacteria Helicobacteraceae and Helicobacter. Deficiency in both PXR and CAR increased the relative abundance of Lactobacillus, which has bile salt hydrolase activity, corresponding to decreased primary taurine-conjugated bile acids (BAs) in feces, which may lead to higher internal burden of taurine and unconjugated BAs, both of which are linked to inflammation, oxidative stress, and cytotoxicity. The basal effect of PXR/CAR on the gut microbiome was distinct from pharmacological and toxicological activation of these receptors. Common PXR/CAR-targeted bacteria were identified, the majority of which were suppressed by these receptors. hPXR-TG mice had a distinct microbial profile as compared to wild-type mice. This study is the first to unveil the basal functions of PXR and CAR on the gut microbiome.
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  • 文章类型: Journal Article
    富血小板血浆(PRP)是一种广泛接受的治疗方法,并提高了医生的护理质量。在过去的十年里,PRP被用来提高整形疗法的临床效果,牙周手术和骨内缺损。根据某些研究,PRP生长因子水平升高,可以促进组织修复,并有可能使PRP有益于颌面和口腔外科医生的再生过程,兽医,运动医学专家和皮肤科医生长期以来一直很钦佩。PRP是一种自体全血成分,含有大量的多种生长因子,如表皮生长因子(EGF),血管内皮生长因子(VEGF),肝细胞生长因子(HGF),成纤维细胞生长因子(FGFs),转化生长因子β-1(TGF-b),胰岛素样生长因子-I(IGF-I)和血小板衍生生长因子(PDGF)可以促进修复和再生。此外,一项针对重度心绞痛患者的PRP临床试验显示其良好的安全性.然而,PRP是一种非常复杂的生物物质,具有一系列活性生物分子,其功能尚未完全阐明。此外,评估PRP可能的心血管组织获益的工作不足.因此,仍然有必要确定临床上最重要的心血管应用,并且需要对临床情景中的进一步研究进行验证.
    Platelet-rich plasma (PRP) is a widely accepted treatment approach and has heightened the quality of care among physicians. PRP has been used over the last decade to boost clinical results of plastic therapies, periodontal surgery and intra-bony defects. According to certain research, elevated levels of PRP growth factors that could promote tissue repair and have the potential for PRP to be beneficial in regenerating processes that Maxillofacial and Oral Surgeons, Veterinary Officers, Athletic medicine specialists and Dermatologists have long admired. PRP is an autologous whole blood fraction that has a heavy amount of a variety of growth factors such as epidermal growth factor (EGF), Vascular Endothelial Growth Factor (VEGF), hepatocyte growth factor (HGF), fibroblast growth factors (FGFs), transforming growth factor beta-1 (TGF-b), insulin-like growth factor-I (IGF-I) and platelet-derived growth factor (PDGF) which can facilitate repair and regeneration. Moreover, a clinical trial of PRP in severe angina patients has shown its excellent safety profile. However, PRP is a very complex biological substance with an array of active biomolecules, its functions are yet to be fully clarified. In-addition, there was insufficient work assessing possible cardiovascular tissue benefits from PRP. Thus, it still remains necessary to identify the most clinically important cardiovascular applications and further research in clinical scenario need to be validated.
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  • 文章类型: Journal Article
    细胞外基质是分子的复杂三维网络,其为细胞提供复杂的微环境。细胞外基质的主要成分,如胶原蛋白,弹性蛋白和相关蛋白质形成超分子组装体,有助于其物理化学性质和组织。已经在原子水平上研究了蛋白质的结构及其超分子组装体,例如原纤维(例如,通过X射线晶体学,核磁共振和低温电子显微镜)或微观尺度。然而,许多蛋白质复合物太大,无法在原子水平上研究,也太小,无法用显微镜研究。大多数细胞外基质成分属于这个中间尺度,所谓的介观尺度,阻止他们详细的描述。模拟和建模是一些强大的和有前途的方法,可以加深我们对中尺度系统的理解。我们开发了一套建模工具,通过利用铰接刚体的动力学作为以原子分辨率为代价研究更大范围运动的手段,在中尺度水平上研究细胞外基质的自组织和大分子的大运动。
    The extracellular matrix is a complex three-dimensional network of molecules that provides cells with a complex microenvironment. The major constituents of the extracellular matrix such as collagen, elastin and associated proteins form supramolecular assemblies contributing to its physicochemical properties and organization. The structure of proteins and their supramolecular assemblies such as fibrils have been studied at the atomic level (e.g., by X-ray crystallography, Nuclear Magnetic Resonance and cryo-Electron Microscopy) or at the microscopic scale. However, many protein complexes are too large to be studied at the atomic level and too small to be studied by microscopy. Most extracellular matrix components fall into this intermediate scale, so-called the mesoscopic scale, preventing their detailed characterization. Simulation and modelling are some of the few powerful and promising approaches that can deepen our understanding of mesoscale systems. We have developed a set of modelling tools to study the self-organization of the extracellular matrix and large motion of macromolecules at the mesoscale level by taking advantage of the dynamics of articulated rigid bodies as a mean to study a larger range of motions at the cost of atomic resolution.
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