Cyt b

Cyt b
  • 文章类型: Journal Article
    尽管人们担心过度捕捞和释放计划对野生种群的潜在影响,我们对2008年至2023年浙江和福建省13个野生种群的3116个个体和两个养殖种群的2787个个体的研究表明,大黄鱼的遗传多样性相对稳定。令人惊讶的是,野生大黄鱼种群的遗传多样性多年来一直保持一致,表明由于过度捕捞导致的人口下降的影响最小。除三沙湾和罗源湾的人口外,野生种群之间没有观察到显著的遗传差异,表明中国东海和南海有一个单一的泛遗传种群。值得注意的是,养殖种群和野生种群之间存在显著的遗传分化,表明培养释放的个体对野生环境的遗传适应可能有限。三沙湾之间观察到的遗传差异,与邻近的罗源湾人口,和其他野生种群强调了栖息地环境和农业活动对大黄鱼遗传结构的双重影响。我们的研究结果表明,尽管由于过度捕捞导致人口数量下降,并扩大了大量养殖释放,大黄鱼种群的遗传多样性基本上不受影响。此外,中国沿海的大黄鱼种群似乎形成了一个具有相当遗传多样性的单一种群。
    Despite concerns about overfishing and the potential impact of release programs on wild populations, our study of 3116 individuals from 13 wild populations and 2787 individuals from two cultured populations in Zhejiang and Fujian provinces spanning 2008 to 2023 reveals a relatively stable genetic diversity in Larimichthys crocea. Surprisingly, the genetic diversity of wild large yellow croaker populations has remained consistent over the years, suggesting minimal influence from population declines due to overfishing. With the exception of populations in Sansha Bay and Luoyuan Bay, no significant genetic differences were observed among wild populations, indicating a single panmictic genetic population across the East and South China seas. Notably, significant genetic differentiation exists between cultured and wild populations, suggesting a possible limited genetic adaptation of cultured-released individuals to the wild environment. The genetic differences observed between the Sansha Bay, with its adjacent Luoyuan Bay populations, and other wild populations underscore the dual effects of habitat environment and farming activities on the genetic structure of large yellow croaker. Our findings suggest that, despite declines in population numbers due to overfishing and expands extensive cultured releases, the genetic diversity of L. crocea populations remains largely unaffected. Moreover, the L. crocea population along the Chinese coast appears to form a single panmictic population with considerable genetic diversity.
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  • 文章类型: Journal Article
    对真正的(真正的)牛皮的认证有很高的需求,以促进商品和经济增长。本研究采用基于RT-PCR的TaqMan测定来促进鉴定。利用现有的线粒体DNA(mtDNA)基因的NCBI数据设计物种特异性引物和探针,特别是细胞色素b区(Cytb)。从Bostaurus和Bosindicus的皮革样品中提取的线粒体DNA,并按照适当的程序进行分析。RT-PCR结果表明,设计的引物和探针对牛皮革样品非常精确。确定的测定检测极限估计为0.1ng的DNA。总之,从成品皮革中提取的可扩增的mtDNA可以使用RT-PCRTaqMan测定法鉴定真正的牛皮,代表了这一领域的开创性报告。
    Authentication of true (genuine) cow leathers is in high demand to promote merchandise and economic growth. The present study employs RT-PCR-based TaqMan assay to facilitate the identification. Species-specific primers and probes were designed utilizing the existing NCBI data on mitochondrial DNA (mtDNA) genes, particularly the cytochrome b region (Cyt b). Mitochondrial DNA extracted from leather samples of both Bos taurus and Bos indicus and analyzed following the appropriate procedures. The RT-PCR results showed the designed primers and probes are exceptionally precise for cow leather samples. The established detection limit for the assay is estimated as 0.1 ng of DNA. In summary, the amplifiable mtDNA extracted from finished leather enables the identification of authentic cow leathers using the RT-PCR TaqMan assay, representing a pioneering report in this field.
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  • 文章类型: Journal Article
    HebiusThompson属的新种,1913年是从盈江县描述的,德宏傣族景颇族自治州,云南省,中国,基于分子和形态学证据.可以通过以下一组字符将其与同类物区分开来:(1)背侧刻度行19-17-17,呈弱龙骨;(2)腹侧146-151;(3)鼻部完整,鼻孔在鼻中;(4)上颌9,第四至第六接触眼睛;(5)下颌10-11,前5接触第一对下巴护罩;(6)前眼罩2;(7)后眼罩3;(8)颞3,排成两排(1+2);(9)上颌牙31,最后4颗稍扩大,没有舒张;(10)尾巴相对较长,男性的TAL/TL比率为0.334;(11)背外侧系列不规则橙色或o石黄色斑点,从颈部延伸到尾部的后部;(12)venter浅橙色,腹侧的尖端具近矩形的黑色斑点。所有Hebius标本均被强烈恢复为单系,其中Hebiustaronensis(史密斯,1940)和Hebiusvenningi(沃尔,1910年)是盈江县标本的单系姐妹。根据细胞色素b的p距离,新物种与同类物种的差异为9.7-15.4%。
    A new species of the genus Hebius Thompson, 1913 is described from Yingjiang County, Dehong Dai and Jingpo Autonomous Prefecture, Yunnan Province, China, based on molecular and morphological evidence. It can be distinguished from its congeners by the following set of characters: (1) dorsal scale rows 19-17-17, feebly keeled; (2) ventrals 146-151; (3) nasal complete, nostril in the middle of the nasal; (4) supralabials 9, the fourth to sixth in contact with the eye; (5) infralabials 10-11, the first 5 touching the first pair of chin shields; (6) preoculars 2; (7) postoculars 3; (8) temporals 3, arranged in two rows (1+2); (9) maxillary teeth 31, the last 4 slightly enlarged, without diastema; (10) tail comparatively long, TAL/TL ratio 0.334 in the male; (11) dorsolateral series of irregular orange or ochre yellow blotches, extending from the neck to the posterior part of the tail; and (12) venter pale orange, tips of ventrals with subrectangular black blotches. All Hebius specimens were strongly recovered as monophyletic, in which Hebiustaronensis (Smith, 1940) and Hebiusvenningi (Wall, 1910) were monophyletic as sister to the Yingjiang County specimens. According to the p-distance of cytochrome b, the new species differs from its congeners by 9.7-15.4%.
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  • 文章类型: Journal Article
    Pyrenoporateresf.teres(Ptt)是北欧春季大麦的严重病原体。在杀菌剂靶蛋白中具有相关突变的Ptt,甾醇14α-脱甲基酶(CYP51A),细胞色素b(Cytb),和琥珀酸脱氢酶(SDH)将使有效的疾病控制处于危险之中。在2021年和2022年的生长季节,分析了来自爱沙尼亚的193个Ptt分离株。在这项研究中,进行了单孢子分离株的突变检测和体外杀菌剂敏感性测定。在CYP51A中具有F489L突变或在Cyp51A基因启动子区域中具有129bp插入片段的Ptt分离株中,对甲氟康唑的敏感性表型降低很明显。然而,无论这些分子变化如何,对丙硫菌唑-脱硫菌的敏感性仍然很高。Ptt人群主要对Bixafen敏感,fluxapyroxad,吡唑酮酯,和唑菌酯.fluxapyroxad和bixafen的敏感性受到两个突变的影响,C-S135R和D-H134R,在SDH亚基中发现。Cytb中的F129L突变影响了唑菌酯,但不影响吡唑醚酯的敏感性。总的来说,来自五个领域的30个分离株同时在三个靶蛋白基因中具有相关突变。这些分离株中的大多数对甲氟康唑的敏感性表型降低,fluxapyroxad,和唑菌酯,而对其他测试杀菌剂的敏感性仍然很高。此外,可能的有性生殖可以增强病原体的适应性,并帮助它适应杀菌剂。
    Pyrenophora teres f. teres (Ptt) is a severe pathogen to spring barley in Northern Europe. Ptt with relevant mutations in fungicide target proteins, sterol 14α-demethylase (CYP51A), cytochrome b (Cyt b), and succinate dehydrogenase (SDH) would put efficient disease control at risk. In the growing seasons of 2021 and 2022, 193 Ptt isolates from Estonia were analysed. In this study, mutation detection and in vitro fungicide sensitivity assays of single-spore isolates were carried out. Reduced sensitivity phenotype to mefentrifluconazole was evident in Ptt isolates with a F489L mutation in CYP51A or with 129 bp insert in the Cyp51A gene-promoter region. However, sensitivity to a prothioconazole-desthio remained high regardless of these molecular changes. The Ptt population was mostly sensitive to bixafen, fluxapyroxad, pyraclostrobin, and azoxystrobin. The sensitivity of fluxapyroxad and bixafen has been affected by two mutations, C-S135R and D-H134R, found in SDH subunits. The F129L mutation in Cyt b influenced azoxystrobin but not pyraclostrobin sensitivity. In total, 30 isolates from five fields had relevant mutations in three target protein genes simultaneously. Most of these isolates had a reduced sensitivity phenotype to mefentrifluconazole, fluxapyroxad, and azoxystrobin, while sensitivity to other tested fungicides remained high. Furthermore, possible sexual reproduction may enhance the pathogen\'s fitness and help it adapt to fungicides.
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  • 文章类型: Journal Article
    我们描述了Parares属的一种新物种,根据从元阳县观音山省级自然保护区采集的三个标本,红河州,云南省,中国。新物种与其同源物的区别在于一个前眼,一个眼球后或眼球后融合有眼球,不靠近轨道,一排扩大的椎骨鳞片,五排在身体中部的背部中部,189-192腹侧鳞片和72-89尾侧鳞片。头部和身体的背面呈黄红色或黄棕色,头部和尾部的腹部和腹面是粉红色的黄色或黄色,或多或少有小的黑点。线粒体DNA的系统发育分析恢复了新物种,该物种是汉普托尼氏螺旋体的姐妹分类单元。在Cytb序列中,新物种与Hamptonisensustricto之间的遗传差异为4.2%,在ND4序列中为5.0%。此外,根据从红河州和文山州收集的标本,我们证实,汉普托尼·萨苏·斯特里托在中国有分布。
    We describe a new species of the genus Pareas, based on three specimens collected from Guanyinshan Provincial Nature Reserve in Yuanyang County, Honghe Prefecture, Yunnan Province, China. The new species is distinguished from its congeners by one preocular, one postocular or postocular fused with subocular, loreal not bordering the orbit, one row enlarged vertebral scales, five rows keeled mid-dorsal scales at the middle of the body, 189-192 ventral scales and 72-89 subcaudal scales. The dorsal surfaces of the head and body are yellowish red or yellowish brown, and the belly and ventral surfaces of the head and tail are pinkish yellow or yellow with more or less small black spots. Phylogenetic analyses of mitochondrial DNA recovered the new species being the sister taxon to P. hamptoni sensu stricto. The genetic divergences between the new species and P. hamptoni sensu stricto were 4.2% in the Cyt b sequences and 5.0% in the ND4 sequences. In addition, based on specimens collected from Honghe and Wenshan prefectures, we confirmed that P. hamptoni sensu stricto is distributed in China.
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  • 文章类型: Journal Article
    在这项研究中,我们确定了148个李氏疫霉分离株对氰唑的敏感性,平均EC50值为0.0091±0.0028μg/mL。通过杀菌剂的适应,在PlCytb中携带F220L取代的抗性突变体(RM)来自野生型分离株。值得注意的是,与亲本分离株相比,这些RM的适应度较低.分子对接分析进一步表明,F220L的变化导致了氰并聚酰胺与PlCytb之间结合能的降低。在第5天,用氰并聚酰胺处理的荔枝果皮中的总酚和黄酮含量显着高于其他处理。总的来说,实验室评估表明,利奇疟原虫中氰唑虫耐药的风险中等,但F220L变化的出现可能导致高水平的抗性。因此,cyazofamid代表了一种有前途的农用化学品,可用于控制采后荔枝枯萎病和延长荔枝果实的保质期。
    In this study, we determined the sensitivity of 148 Phytophthora litchii isolates to cyazofamid, yielding a mean EC50 value of 0.0091 ± 0.0028 μg/mL. Through fungicide adaptation, resistant mutants (RMs) carrying the F220L substitution in PlCyt b were derived from wild-type isolates. Notably, these RMs exhibited a lower fitness compared with the parental isolates. Molecular docking analysis further revealed that the F220L change contributed to a decrease in the binding energy between cyazofamid and PlCyt b. The total phenol and flavonoid contents in the litchi pericarp treated with cyazofamid on day 5 were significantly higher than in other treatments. Overall, the laboratory assessment indicated a moderate risk of cyazofamid resistance in P. litchii, but the emergence of the F220L change could lead to a high level of resistance. Thus, cyazofamid represents a promising agrochemical for controlling postharvest litchi downy blight and extending the shelf life of litchi fruits.
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  • 文章类型: Journal Article
    荔枝枯萎病(LDB),一种由卵菌李氏疫霉引起的常见疾病,对收获前和收获后阶段都构成重大威胁,造成了巨大的经济损失。法莫沙酮,一种醌外抑制剂杀菌剂,2002年在中国注册控制LDB。然而,关于风险的信息有限,机制,以及对法莫沙酮抗性对荔枝果实品质的影响。在这项研究中,我们确定了133株李奇毕赤酵母分离株对法莫沙酮的敏感性,平均EC50值为0.46±0.21μg/mL。通过杀菌剂的适应,我们从野生型分离株中获得了PlCytb(P.litchi中的细胞色素b)中具有M124I和Y131C取代的抗性突变体。体外评估表明,与亲本分离株相比,抗性突变体的适应性显着降低。这些实验室研究结果表明,利奇沙酮对法莫沙酮有中等的耐药风险。分子对接分析表明,M124I和Y131C改变破坏了氢键,并削弱了法莫沙酮和PlCytb之间的结合能。这表明M124I和Y131C改变确实赋予了P.litchii的法莫沙酮抗性。与敏感分离株相比,由法莫沙酮抗性突变体引起的感染对荔枝果实的特征性状表现出降低或相当的影响。为了将来检测法莫沙酮抗性菌株,基于M124I取代设计AS-PCR引物。
    Lychee downy blight (LDB), a common disease caused by the oomycete Phytophthora litchii, poses a significant threat to both pre- and post-harvest stages, leading to substantial economic losses. Famoxadone, a quinone outside inhibitor fungicide, was registered for controlling LDB in China in 2002. However, limited information is available regarding the risk, mechanism, and impact on lychee fruit quality associated with famoxadone resistance. In this study, we determined the sensitivity of 133 P. litchii isolates to famoxadone, yielding a mean EC50 value of 0.46 ± 0.21 μg/mL. Through fungicide adaption, we derived resistant mutants with M124I and Y131C substitutions in PlCyt b (Cytochrome b in P. litchii) from wild-type isolates. In vitro assessments revealed that the fitness of the resistant mutants was significantly lower compared to the parental isolates. These laboratory findings demonstrate a moderate resistance risk of P. litchii to famoxadone. Molecular docking analyses indicated that the M124I and Y131C alterations disrupted hydrogen bonds and weakened the binding energy between famoxadone and PlCyt b. This indicates that the M124I and Y131C changes do indeed confer famoxadone resistance in P. litchii. Infection caused by famoxadone-resistant mutants exhibited a decreased or comparable impact on the characteristic traits of lychee fruit compared to the sensitive isolate. For future detection of famoxadone-resistant strains, AS-PCR primers were designed based on the M124I substitution.
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  • 文章类型: Journal Article
    Phoxinusabanticus,一个新物种,是从Abant湖盆地描述的。它与Türkiye和邻近水域的Phoxinus物种的区别在于侧线鳞片较少(60-69,75-91在Phoxinuscolchicus,Phoxinusstrandjae中的75-90);较深的尾梗(尾梗深度:长度为1.8-2.3倍,vs.秋水假单胞菌2.4-2.9;strandjae2.5-3.2);男性乳房中没有鳞屑(与目前);男性的腹侧身体在婚礼上呈红色(与咸味)。新物种,P.Abanticus,也区别于它最接近的亲戚,P.strandjae,在mtDNA细胞色素b(cytb)基因中至少有3.40%的遗传距离。
    Phoxinus abanticus, a new species, is described from the Lake Abant basin. It is distinguished from Phoxinus species in Türkiye and adjacent waters by the presence of fewer lateral line scales (60-69, vs. 75-91 in Phoxinus colchicus, 75-90 in Phoxinus strandjae); a deeper caudal peduncle (caudal peduncle depth: 1.8-2.3 times in length, vs. 2.4-2.9 in P. colchicus; 2.5-3.2 in P. strandjae); the absence of scales in the breast of males (vs. present); and ventral body reddish in nuptial colouration pattern for male (vs. brackish). The new species, P. abanticus, is also distinguished from its closest relative, P. strandjae, by a minimum of 3.40% genetic distance in the mtDNA cytochrome b (cyt b) gene.
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  • 文章类型: Journal Article
    传统上,根据形态特征鉴定鱼类。尽管这些分类描述是必不可少的,在某些情况下,区分这些物种的形态特征显示出边际差异。例如,在喜马拉雅山的Poonch河里,有21种,其中一些在形态上相似,这些物种之间的分类区别尚不清楚。因此,在这项研究中,我们使用了两个线粒体基因的序列,细胞色素b(Cytb)和一个更大的核糖体亚基(16SrRNA),以及形态学分析,以解决六种鱼类之间的任何分类歧义。最大似然结果显示,所有物种都根据其科和属进行聚类。表型分析也支持这一说法,就像所有不同属的物种一样,Tor,Garra,Traqilabeo,和眼胸被分组在它们的特定集群中,它表明,一个单独类别的物种具有共同的形态特征。虽然这些物种的遗传分析表明核苷酸多样性(p)和单倍型多样性,Cytb的Hd值为0.644,16SrRNA的Hd值为0.899,证实了河流中丰富的遗传多样性。总的来说,我们建议在界定鱼类物种时采用综合方法比单独的方法更有效,并且可以用于快速诊断物种并了解物种之间的进化关系。
    Traditionally, species of fish are identified based on morphological characteristics. Although these taxonomic descriptions are essential, there are cases where the morphological characters distinguishing these species show marginal differences. For instance, in the Poonch River in the Himalayas, there are 21 species, out of which some are morphologically similar, and the taxonomic distinction between these species is unclear. Therefore, in this study, we used sequences from two mitochondrial genes, Cytochrome b (Cyt b) and a larger ribosomal subunit (16S rRNA), as well as the morphological analysis to address any taxonomic ambiguities among the six fish species. Maximum Likelihood results revealed that all the species were clustered according to their families and genera. The phenotypic analysis also supported this statement, as all the species of different genera like Schizothorax, Tor, Garra, Traqilabeo, and Glyptothorax are grouped in their particular cluster, it shows that species of a separate class share a mutual morphological characteristic. While genetic analyses of these species suggest nucleotide diversity (p) and haplotype diversity, with Hd values as 0.644 for Cyt b and 0.899 for 16S rRNA, confirming the rich genetic diversity in the river. Overall, we recommend that the integrative approach in delimiting the fish species is more effective than the individual one and can be used to rapidly diagnose a species and understand the evolutionary relationship between the species.
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  • 文章类型: Journal Article
    长矛是一种淡水/咸水鱼类,对欧洲水产养殖越来越感兴趣。由于人类活动,野生种群在物种自然范围的许多区域显示出下降的迹象。野生和驯化种群遗传状况的比较评估对于将来建立遗传育种计划非常有用。本研究的主要目的是评估和比较来自商业农场的13个驯化种群和8个野生种群的遗传变异性,开发一种高效的微卫星多重工具进行基因分型。部分细胞色素b基因序列也用于推断系统地理关系。结果表明,平均而言,与野生种群相比,驯化种群的遗传多样性水平并未显着降低,也没有近亲繁殖。核数据提供了证据,表明欧洲的长矛种群至少属于两个遗传分化的群体:第一个主要存在于北欧和波罗的海周围,而第二个是来自中欧的人口。在第二组中,匈牙利血统的人口构成了需要特别考虑的差异化种群。分析的水产养殖亲鱼似乎含有单一来源的鱼类,只有少数例外。
    The pikeperch is a freshwater/brackish water fish species with growing interest for European aquaculture. Wild populations show signs of decline in many areas of the species natural range due to human activities. The comparative evaluation of genetic status in wild and domesticated populations is extremely useful for the future establishment of genetic breeding programs. The main objective of the present study was to assess and compare the genetic variability of 13 domesticated populations from commercial farms and 8 wild populations, developing an efficient microsatellite multiplex tool for genotyping. Partial cytochrome b gene sequences were also used to infer phylogeographic relationships. Results show that on average, the domesticated populations do not exhibit significantly lower levels of genetic diversity compared to the wild ones and do not suffer from inbreeding. Nuclear data provide evidence that pikeperch populations in Europe belong to at least two genetically differentiated groups: the first one is predominantly present in Northern Europe and around the Baltic Sea, while the second one comprises populations from Central Europe. In this second group, Hungarian origin populations constitute a differentiated stock that needs special consideration. Aquaculture broodstocks analyzed appear to contain fish of a single origin with only a few exceptions.
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