Biological Clocks

生物时钟
  • 文章类型: Editorial
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  • 文章类型: Journal Article
    乳腺癌(BC)是全球女性中最常见和致命的恶性肿瘤之一。最近的研究发现昼夜节律与乳腺癌的发病机理有关。在本文中,我们综述了昼夜节律基因失调影响BC发育的分子机制,专注于关键的时钟基因,脑和肌肉ARNT样蛋白1(BMAL1)和昼夜节律运动输出周期kaput(时钟)。我们讨论了昼夜节律中断(CRD)如何改变肿瘤微环境(TME),免疫反应,炎症,和血管生成。CRD损害了免疫监视以及免疫效应物的特征和活动,包括CD8+T细胞和肿瘤相关巨噬细胞,这对有效的抗肿瘤反应很重要。同时,在这次审查中,我们讨论双向相互作用:年龄和昼夜节律,衰老通过减少血管活性肠多肽(VIP)进一步增加患乳腺癌的风险,影响视交叉上核(SCN)同步,修复受损DNA的能力降低,免疫力减弱。这些复杂的相互作用通过将时钟药物与时间疗法相结合以增强免疫反应,同时减少肿瘤进展以获得更好的乳腺癌结果,从而为靶向治疗开辟了新途径。这篇综述试图涵盖有关受乳腺癌昼夜节律影响的肿瘤免疫关系的广泛知识领域。
    Breast cancer (BC) is one of the most common and fatal malignancies among women worldwide. Circadian rhythms have emerged in recent studies as being involved in the pathogenesis of breast cancer. In this paper, we reviewed the molecular mechanisms by which the dysregulation of the circadian genes impacts the development of BC, focusing on the critical clock genes, brain and muscle ARNT-like protein 1 (BMAL1) and circadian locomotor output cycles kaput (CLOCK). We discussed how the circadian rhythm disruption (CRD) changes the tumor microenvironment (TME), immune responses, inflammation, and angiogenesis. The CRD compromises immune surveillance and features and activities of immune effectors, including CD8+ T cells and tumor-associated macrophages, that are important in an effective anti-tumor response. Meanwhile, in this review, we discuss bidirectional interactions: age and circadian rhythms, aging further increases the risk of breast cancer through reduced vasoactive intestinal polypeptide (VIP), affecting suprachiasmatic nucleus (SCN) synchronization, reduced ability to repair damaged DNA, and weakened immunity. These complex interplays open new avenues toward targeted therapies by the combination of clock drugs with chronotherapy to potentiate the immune response while reducing tumor progression for better breast cancer outcomes. This review tries to cover the broad area of emerging knowledge on the tumor-immune nexus affected by the circadian rhythm in breast cancer.
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  • 文章类型: Journal Article
    真核生物的生物钟控制着生理和行为的日常节律。它显示了一个复杂的组织,涉及分子转录时钟和氧化还原振荡器,它们可能协调工作以控制细胞节律。氧化还原振荡器在适应O2水平的环境变化的进化过程中很早就出现了,并且已被证明可以调节不同真核细胞中甘油脂(GL)代谢的日常节律。GL是脂滴(LD)的关键成分,细胞内储存细胞器,存在于所有生物体中,对能量和脂质稳态调节和生存至关重要;然而,细胞生物能学的状态在时间上并不恒定,并且取决于能量需求。因此,LD的形成和降解可能反映了能量需求之后的时间依赖性过程。这项工作通过研究原核和真核细胞和生物体,研究了LD含量在进化过程中代谢节律的存在。我们发现铜绿假单胞菌和秀丽隐杆线虫中LD含量的持续时间振荡与温度周期同步,地塞米松脉冲后的血清休克同步人胚肾细胞(HEK293细胞)和脑肿瘤细胞(T98G和GL26)。此外,在同步T98G细胞中,LD振荡通过影响代谢振荡器的胞浆活性的糖原合酶激酶-3(GSK-3)抑制或通过敲低关键GL合成酶LIPIN-1而改变。总的来说,我们的发现揭示了代谢振荡的存在,就LD含量而言,在进化尺度上高度保守,尽管复杂性变化,regulation,和细胞组织。
    The biological clock in eukaryotes controls daily rhythms in physiology and behavior. It displays a complex organization that involves the molecular transcriptional clock and the redox oscillator which may coordinately work to control cellular rhythms. The redox oscillator has emerged very early in evolution in adaptation to the environmental changes in O2 levels and has been shown to regulate daily rhythms in glycerolipid (GL) metabolism in different eukaryotic cells. GLs are key components of lipid droplets (LDs), intracellular storage organelles, present in all living organisms, and essential for energy and lipid homeostasis regulation and survival; however, the cell bioenergetics status is not constant across time and depends on energy demands. Thus, the formation and degradation of LDs may reflect a time-dependent process following energy requirements. This work investigated the presence of metabolic rhythms in LD content along evolution by studying prokaryotic and eukaryotic cells and organisms. We found sustained temporal oscillations in LD content in Pseudomonas aeruginosa bacteria and Caenorhabditis elegans synchronized by temperature cycles, in serum-shock synchronized human embryonic kidney cells (HEK 293 cells) and brain tumor cells (T98G and GL26) after a dexamethasone pulse. Moreover, in synchronized T98G cells, LD oscillations were altered by glycogen synthase kinase-3 (GSK-3) inhibition that affects the cytosolic activity of the metabolic oscillator or by knocking down LIPIN-1, a key GL synthesizing enzyme. Overall, our findings reveal the existence of metabolic oscillations in terms of LD content highly conserved across evolutionary scales notwithstanding variations in complexity, regulation, and cell organization.
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  • 文章类型: Journal Article
    控制人类怀孕时间长短的机制尚未确定,而早产仍然是全世界新生儿死亡和残疾的主要原因。这里,我们回顾了最近的数据,以产生关于妊娠时钟如何在无并发症的妊娠中启动人类分娩的新假设。在这个模型中,胎儿生长引起的胎盘应激驱动胎盘产生NF-κB,然后由来自成熟胎儿的含有血小板活化因子和补体4结合蛋白A的外泌体激活,驱动胎盘中的促产基因。更好地理解触发劳动的时钟可能会导致新的,更有效的治疗方法来预防自发性早产。
    UNASSIGNED: The mechanisms that determine the length of pregnancy remain undetermined. Here, we review what has been previously published on the topic and incorporate new data to describe a molecular model in which placental stress and fetal signaling ultimately lead to labor onset in uncomplicated pregnancies.
    UNASSIGNED: The mechanisms that govern the length of human pregnancy have not been determined, while preterm birth remains the leading cause of death and disability in newborns worldwide. Here, we review recent data to generate a novel hypothesis about how the pregnancy clock may function to initiate human labor in uncomplicated pregnancies. In this model, placental stress induced by the growing fetus drives placental production of NFKB, which is then activated by exosomes containing platelet-activating factor and complement 4-binding protein-A from the mature fetus, to drive pro-labor genes in the placenta. A better understanding of the clock that triggers labor may lead to new, more effective therapies to prevent spontaneous preterm birth.
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  • 文章类型: Editorial
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  • 文章类型: Journal Article
    节律性基因表达不仅可以源自时钟基因的自主节律,还可能源自睡眠-觉醒周期。Jan和他的同事使用一种新的基于模型的方法来剖析这些个体效应,发现这两个因素都有助于基因表达节律,组织内和组织间的程度不同。
    Rhythmic gene expression can originate not only from the autonomous rhythm of clock genes but likely also from sleep-wake cycles. Jan and colleagues used a novel model-based approach to dissect these individual effects and found that both factors contribute to gene expression rhythms, varying in degree within and across tissues.
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  • 文章类型: Journal Article
    衰老时钟是生物年龄的预测模型,来自与年龄相关的变化,如表观遗传变化,血液生物标志物,and,最近,微生物组。肠道和皮肤微生物群调节的不仅仅是屏障和免疫功能。最近的研究表明,人类微生物组可以预测衰老。在这篇叙述性评论中,我们的目的是讨论肠道和皮肤微生物组如何影响衰老时钟,并阐明时间和生物年龄之间的区别。在PubMed/MEDLINE数据库上进行文献检索,关键词为:“皮肤微生物组”或“肠道微生物组”和“衰老时钟”或“表观遗传学”。肠道和皮肤微生物组可以用来创建基于分类法的衰老时钟,生物多样性,和功能。这些衰老时钟中最重要的微生物群或代谢途径可能会影响衰老时钟预测和生物年龄。此外,肠道和皮肤微生物群可以通过时钟基因的调节和作为底物或酶调节剂的代谢物的产生直接和间接地影响衰老时钟。基于微生物组的衰老时钟模型可能具有治疗潜力。然而,需要更多的研究来提高我们对微生物群在衰老时钟中的作用的理解。
    Aging clocks are predictive models of biological age derived from age-related changes, such as epigenetic changes, blood biomarkers, and, more recently, the microbiome. Gut and skin microbiota regulate more than barrier and immune function. Recent studies have shown that human microbiomes may predict aging. In this narrative review, we aim to discuss how the gut and skin microbiomes influence aging clocks as well as clarify the distinction between chronological and biological age. A literature search was performed on PubMed/MEDLINE databases with the following keywords: \"skin microbiome\" OR \"gut microbiome\" AND \"aging clock\" OR \"epigenetic\". Gut and skin microbiomes may be utilized to create aging clocks based on taxonomy, biodiversity, and functionality. The top contributing microbiota or metabolic pathways in these aging clocks may influence aging clock predictions and biological age. Furthermore, gut and skin microbiota may directly and indirectly influence aging clocks through the regulation of clock genes and the production of metabolites that serve as substrates or enzymatic regulators. Microbiome-based aging clock models may have therapeutic potential. However, more research is needed to advance our understanding of the role of microbiota in aging clocks.
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  • 文章类型: Journal Article
    目的:本研究旨在研究睡眠剥夺(SD)在明暗阶段对肝脏和白色脂肪组织(WAT)脂质代谢或脂质代谢调节的影响,并探讨SD对与时钟基因相关的脂质代谢的昼夜影响的可能机制。
    方法:2月龄的雄性C57BL/6J小鼠每天剥夺睡眠20小时,连续10天进行弱强迫运动。记录SD和对照小鼠的体重和食物消耗水平,然后在ZT(zeitgeber时间)2和ZT14处死小鼠。外围时钟基因,参与WAT中脂肪合成和分解代谢的酶,和褪黑素信号通路介导的肝脏脂质代谢进行了评估。非靶向代谢组学和串联质量标签(TMT)蛋白质组学用于鉴定肝脏中的差异脂质代谢途径。
    结果:体重增加和每日食物消耗在SD后显著升高。观察到WAT中肝脏外周时钟的昼夜调节和参与脂肪合成和分解代谢的酶的明显破坏,强调肝脏脂质代谢途径,而褪黑素信号通路介导的脂质代谢表现出中等变化。
    结论:在小鼠中,连续十天的SD增加了体重增加和每日食物消耗。此外,在光明和黑暗时期,SD严重破坏了WAT和肝脏中的脂质代谢。这些昼夜变化可能与周围生物钟的紊乱有关。
    OBJECTIVE: This study aimed to examine the effect of sleep deprivation (SD) on lipid metabolism or lipid metabolism regulation in the liver and white adipose tissue (WAT) during the light and dark phases and explored the possible mechanisms underlying the diurnal effect of SD on lipid metabolism associated with clock genes.
    METHODS: Male C57BL/6J mice aged 2 months were deprived of sleep daily for 20 h for ten consecutive days with weakly forced locomotion. The body weights and food consumption levels of the SD and control mice were recorded, and the mice were then sacrificed at ZT (zeitgeber time) 2 and ZT 14. The peripheral clock genes, enzymes involved in fat synthesis and catabolism in the WAT, and melatonin signalling pathway-mediated lipid metabolism in the liver were assessed. Untargeted metabolomics and tandem mass tag (TMT) proteomics were used to identify differential lipid metabolism pathways in the liver.
    RESULTS: Bodyweight gain and daily food consumption were dramatically elevated after SD. Profound disruptions in the diurnal regulation of the hepatic peripheral clock and enzymes involved in fat synthesis and catabolism in the WAT were observed, with a strong emphasis on hepatic lipid metabolic pathways, while melatonin signalling pathway-mediated lipid metabolism exhibited moderate changes.
    CONCLUSIONS: In mice, ten consecutive days of SD increased body weight gain and daily food consumption. In addition, SD profoundly disrupted lipid metabolism in the WAT and liver during the light and dark periods. These diurnal changes may be related to disorders of the peripheral biological clock.
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  • 文章类型: Journal Article
    与衰老相关的健康问题是未来的主要公共卫生问题。衰老是一个复杂的过程,个体之间存在广泛的互变性。因此,有必要针对与老龄化相关的因素制定创新的公共卫生策略,并开发准确评估这些策略有效性的工具。测量生物年龄的新方法,比如表观遗传时钟,变得相关。这些时钟使用来自基因组的非连续可变信息,并采用数学算法根据DNA甲基化水平估计生物年龄。因此,在本研究中,我们全面回顾了表观遗传时钟的现状及其在人类表型组中的关联.我们强调这些工具在流行病学背景下的潜在效用,特别是在评估以促进健康老龄化为重点的公共卫生干预措施的影响方面。我们的评论描述了表观遗传时钟与整个生命和健康时期的多种特征之间的关联。此外,我们强调了研究的进展,而不仅仅是建立表观遗传年龄和疾病之间的因果机制。我们探索了表观遗传时钟在测量以恢复活力为重点的干预措施功效中的应用。
    Health problems associated with aging are a major public health concern for the future. Aging is a complex process with wide intervariability among individuals. Therefore, there is a need for innovative public health strategies that target factors associated with aging and the development of tools to assess the effectiveness of these strategies accurately. Novel approaches to measure biological age, such as epigenetic clocks, have become relevant. These clocks use non-sequential variable information from the genome and employ mathematical algorithms to estimate biological age based on DNA methylation levels. Therefore, in the present study, we comprehensively review the current status of the epigenetic clocks and their associations across the human phenome. We emphasize the potential utility of these tools in an epidemiological context, particularly in evaluating the impact of public health interventions focused on promoting healthy aging. Our review describes associations between epigenetic clocks and multiple traits across the life and health span. Additionally, we highlighted the evolution of studies beyond mere associations to establish causal mechanisms between epigenetic age and disease. We explored the application of epigenetic clocks to measure the efficacy of interventions focusing on rejuvenation.
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  • 文章类型: Journal Article
    夏令时(DST)目前在许多国家/地区使用,其理由是它可以增强白天时间与人口活动高峰之间的一致性。转换进入和离开DST的行为引入了昼夜节律的中断,从而影响睡眠和整体健康。尽管受影响的人数众多,这种昼夜节律中断的后果经常被忽视。这里,我们使用人类昼夜节律起搏器的数学模型来阐明生物钟如何与白天和晚上暴露在自然光和电灯下的相互作用。这种相互作用在确定对DST转换或从DST转换所施加的1小时时区转换的适应中起着至关重要的作用。在关于DST的全球讨论中,尽管一些研究表明人类昼夜节律系统需要几天才能完全适应DST过渡,但人们普遍认为个体很容易适应DST过渡。我们的研究强调,夜间光照变化可能是重新夹带的主要驱动力,与时间生物学模型预测,与具有较短的固有期(即较晚的时间型)的人相比,具有较长的固有期(即较晚的时间型)的人向DST过渡或从DST过渡的速度更慢。此外,该模型预测适应速度的个体间差异很大,特别是在弹簧过渡期间。从我们的模型中得出的预测为基于昼夜节律的光照策略提供了建议,这些建议有助于更快速地适应与DST相关的过渡或跨单个时区旅行。因此,我们的研究为正在进行的DST及其对人类昼夜节律的影响提供了有价值的见解。
    Daylight saving time (DST) is currently utilized in many countries with the rationale that it enhances the alignment between daylight hours and activity peaks in the population. The act of transitioning into and out of DST introduces disruptions to the circadian rhythm, thereby impacting sleep and overall health. Despite the substantial number of individuals affected, the consequences of this circadian disruption have often been overlooked. Here, we employ a mathematical model of the human circadian pacemaker to elucidate how the biological clock interacts with daytime and evening exposures to both natural and electrical light. This interaction plays a crucial role in determining the adaptation to the 1 hour time zone shift imposed by the transition to or from DST. In global discussions about DST, there is a prevailing assumption that individuals easily adjust to DST transitions despite a few studies indicating that the human circadian system requires several days to fully adjust to a DST transition. Our study highlights that evening light exposure changes can be the main driving force for re-entrainment, with chronobiological models predicting that people with longer intrinsic period (i.e. later chronotype) entrain more slowly to transitions to or from DST as compared to people with a shorter intrinsic period (earlier chronotype). Moreover, the model forecasts large inter-individual differences in the adaptation speed, in particular during the spring transition. The predictions derived from our model offer circadian biology-based recommendations for light exposure strategies that facilitate a more rapid adaptation to DST-related transitions or travel across a single time zone. As such, our study contributes valuable insights to the ongoing discourse on DST and its implications for human circadian rhythms.
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