morphogenesis

形态发生
  • 文章类型: Journal Article
    组织屈曲是胚胎中越来越受欢迎的形态发生模式,但是通常不清楚几何和材料参数如何在自然发育环境中分子确定以生成不同的功能模式。这里,我们研究了不同的力学特性与肠道-食道中不同的前后区室的形态发生之间的联系,小肠,和大肠。这些地区起源于一个简单的,普通管,但采用独特的形式。使用来自发育中的小鸡肠道的测量数据以及最小理论和差异生长模拟,我们研究了沿着整个早期肠道的不同管腔形态,并证明了时空几何形状,模数,和生长速率控制粘膜屈曲的节段特异性模式。初级屈曲成皱纹,折叠,沿着肠道折痕,以及二次屈曲现象,包括前肠的周期加倍和后肠的多尺度褶皱,被机械模型捕获并很好地解释。这项研究推进了我们现有的关于身份如何导致这些地区形成的知识,为进一步揭示肠道形态学区域化中分子与力学关系奠定基础。
    Tissue buckling is an increasingly appreciated mode of morphogenesis in the embryo, but it is often unclear how geometric and material parameters are molecularly determined in native developmental contexts to generate diverse functional patterns. Here, we study the link between differential mechanical properties and the morphogenesis of distinct anteroposterior compartments in the intestinal tract-the esophagus, small intestine, and large intestine. These regions originate from a simple, common tube but adopt unique forms. Using measured data from the developing chick gut coupled with a minimal theory and simulations of differential growth, we investigate divergent lumen morphologies along the entire early gut and demonstrate that spatiotemporal geometries, moduli, and growth rates control the segment-specific patterns of mucosal buckling. Primary buckling into wrinkles, folds, and creases along the gut, as well as secondary buckling phenomena, including period-doubling in the foregut and multiscale creasing-wrinkling in the hindgut, are captured and well explained by mechanical models. This study advances our existing knowledge of how identity leads to form in these regions, laying the foundation for future work uncovering the relationship between molecules and mechanics in gut morphological regionalization.
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  • 文章类型: Journal Article
    果蝇卵室(EC)开始时是球形组织。随着成熟,EC的外毛囊细胞在垂直于前后轴的方向上共同迁移,从球形到椭圆形的EC。丝状肌动蛋白(F-actin)在将单个迁移细胞塑造成整体EC形状中起着重要作用,就像每个细胞迁移一样。本文的主要重点是揭示不同肌动蛋白结合蛋白(ABP)在调节成熟果蝇卵形中的功能。我们已经筛选了66个ABPs,遗传筛选数据显示,Arp2/3复合物基因和“加帽蛋白β”(cpb)基因的个体敲除已严重改变了卵表型。Arpc1和cpbRNAi介导的敲低导致球形卵的形成,这些卵没有背侧附件。研究还显示了Arpc1和cpb对产卵数量和卵泡细胞形态的作用。此外,Arpc1和cpb的消耗导致F-肌动蛋白量的变化。一起,数据表明Arpc1和cpb调节果蝇的卵形,F-肌动蛋白管理,产卵特性和背侧附属物的形成。
    The Drosophila egg chamber (EC) starts as a spherical tissue at the beginning. With maturation, the outer follicle cells of EC collectively migrate in a direction perpendicular to the anterior-posterior axis, to shape EC from spherical to ellipsoidal. Filamentous actin (F-actin) plays a significant role in shaping individual migratory cells to the overall EC shape, like in every cell migration. The primary focus of this article is to unveil the function of different Actin Binding Proteins (ABPs) in regulating mature Drosophila egg shape. We have screened 66 ABPs, and the genetic screening data revealed that individual knockdown of Arp2/3 complex genes and the \"capping protein β\" (cpb) gene have severely altered the egg phenotype. Arpc1 and cpb RNAi mediated knockdown resulted in the formation of spherical eggs which are devoid of dorsal appendages. Studies also showed the role of Arpc1 and cpb on the number of laid eggs and follicle cell morphology. Furthermore, the depletion of Arpc1 and cpb resulted in a change in F-actin quantity. Together, the data indicate that Arpc1 and cpb regulate Drosophila egg shape, F-actin management, egg-laying characteristics and dorsal appendages formation.
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  • 文章类型: Journal Article
    脉冲收缩动力学如何驱动上皮片中细胞和组织拓扑的重塑一直是发育和疾病的关键问题。由于成像和分析技术的限制,描述了细胞和邻居关系变化的体内机制的研究很大程度上仅限于平面顶端区域的分析。因此,上皮细胞的体积性质如何影响三维细胞表面的力传播和重塑,尤其包括根尖-基轴,不清楚。这里,我们执行晶格光片显微镜(LLSM)为基础的分析,以确定多远和快速的力传播跨不同的根尖基底层,以及从柱状上皮开始的拓扑变化。这些数据集具有高度的时间和深度分辨率,并揭示了拓扑变化力在空间上纠缠,以脉冲方式在观察到的根尖-基轴上产生收缩力,而细胞体积的守恒限制了瞬时细胞变形。领导层行为在有利的阶段性条件下机会主义地发生,随着新的收缩脉冲推动细胞拓扑结构的进一步变化,滞后层“拉链”可以赶上。这些结果与拓扑起始的特定区域相反,并证明了基于4D的系统分析对于理解细胞尺寸中的力和变形如何在三维环境中传播的重要性。
    How pulsed contractile dynamics drive the remodeling of cell and tissue topologies in epithelial sheets has been a key question in development and disease. Due to constraints in imaging and analysis technologies, studies that have described the in vivo mechanisms underlying changes in cell and neighbor relationships have largely been confined to analyses of planar apical regions. Thus, how the volumetric nature of epithelial cells affects force propagation and remodeling of the cell surface in three dimensions, including especially the apical-basal axis, is unclear. Here, we perform lattice light sheet microscopy (LLSM)-based analysis to determine how far and fast forces propagate across different apical-basal layers, as well as where topological changes initiate from in a columnar epithelium. These datasets are highly time- and depth-resolved and reveal that topology-changing forces are spatially entangled, with contractile force generation occurring across the observed apical-basal axis in a pulsed fashion, while the conservation of cell volumes constrains instantaneous cell deformations. Leading layer behaviors occur opportunistically in response to favorable phasic conditions, with lagging layers \"zippering\" to catch up as new contractile pulses propel further changes in cell topologies. These results argue against specific zones of topological initiation and demonstrate the importance of systematic 4D-based analysis in understanding how forces and deformations in cell dimensions propagate in a three-dimensional environment.
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  • 文章类型: Journal Article
    我们探讨了图灵的生物学思想在其智能机械概念发展中的作用。我们一方面追溯了他在图灵(1948)中的“组织机器”的原始连接主义者概念与他在发育生物学中的形态发生数学理论(1952)之间的可能关系。这些作品涉及不同的研究领域,并遵循生物学理论的不同范式,分别假定学习中达尔文选择的类似物和有机模式形成中的数学形式定律。尽管如此,图灵的这些工作是相关的,首先,在原则上服从他(1936)的建模计算方法。第二,它们通过图灵对学习过程对大脑解剖结构的可能影响的分散推测而联系在一起。我们认为这两种理论形成了一对不平等的夫妇,从不同的角度,以局部的方式,指出认知是一种生物学和具体化的现象,出于图灵建模计算方法固有的原因,不能直接解决这个问题。我们探索了这两种不同但相关的理论可以更明确和系统地联系的方式,使用冯·诺依曼在细胞自动机上的同期和相关工作以及最近的仿生方法作为陪衬。我们得出的结论是,“主动性”的性质和物质实现的方式是决定图灵智能机械可能性的关键问题。
    We inquire into the role of Turing\'s biological thought in the development of his concept of intelligent machinery. We trace the possible relations between his proto-connectionist notion of \'organising\' machines in Turing (1948) on the one hand and his mathematical theory of morphogenesis in developmental biology (1952) on the other. These works were concerned with distinct fields of inquiry and followed distinct paradigms of biological theory, respectively postulating analogues of Darwinian selection in learning and mathematical laws of form in organic pattern formation. Still, these strands of Turing\'s work are related, first, in terms of being amenable in principle to his (1936) computational method of modelling. Second, they are connected by Turing\'s scattered speculations about the possible bearing of learning processes on the anatomy of the brain. We argue that these two theories form an unequal couple that, from different angles and in partial fashion, point towards cognition as a biological and embodied phenomenon while, for reasons inherent to Turing\'s computational approach to modelling, not being capable of directly addressing it as such. We explore ways in which these two distinct-but-related theories could be more explicitly and systematically connected, using von Neumann\'s contemporaneous and related work on Cellular Automata and more recent biomimetic approaches as a foil. We conclude that the nature of \'initiative\' and the mode of material realisation are the key issues that decide on the possibility of intelligent machinery in Turing.
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  • 文章类型: Journal Article
    基底膜(BM)是一种细胞外基质,在动物发育中起重要作用。BM的组成和结构特性的空间异质性为细胞提供了形态发生过程的重要线索,例如细胞迁移或细胞极化。这里,使用果蝇卵室作为模型系统,我们表明BM在开发过程中变得异质,后极的胶原蛋白IV密度降低,并且排列的纤维状结构的微图案不同。我们确定了卵室的适当细长形状所需的两种AdamTS基质蛋白酶,然而,它们起作用的分子机制是不同的。StallisrequiredtoestablishBM异质性bylocallylimitcollagenIVproteindensity,而AdamTS-A改变了后极BM内纤维状结构的微图案。我们的结果表明,AdamTS蛋白酶控制器官形状所需的BM异质性。
    The basement membrane (BM) is an extracellular matrix that plays important roles in animal development. A spatial heterogeneity in composition and structural properties of the BM provide cells with vital cues for morphogenetic processes such as cell migration or cell polarization. Here, using the Drosophila egg chamber as a model system, we show that the BM becomes heterogeneous during development, with a reduction in Collagen IV density at the posterior pole and differences in the micropattern of aligned fiber-like structures. We identified two AdamTS matrix proteases required for the proper elongated shape of the egg chamber, yet the molecular mechanisms by which they act are different. Stall is required to establish BM heterogeneity by locally limiting Collagen IV protein density, whereas AdamTS-A alters the micropattern of fiber-like structures within the BM at the posterior pole. Our results suggest that AdamTS proteases control BM heterogeneity required for organ shape.
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  • 文章类型: Journal Article
    简单的机器是利用机械优势施加力的基本设备。动物和植物通过各种简单机器的操作进行自组装。不同物种的胚胎驱动这些简单的机器来驱动几何变换,将无序的细胞团转换成具有离散身份和功能的有组织的结构。这些转换本质上与自组织和自组装的顺序和重叠步骤耦合。通过细胞和组织的分子组成及其信息网络探索了自组织的过程。相比之下,努力理解自组装的简单机器必须将分子组成与力学的物理原理相结合。本入门与阐明这些机器的操作有关,专注于形态发生的“问题”。理解自组装的进展将最终连接分子-,亚细胞-,植物和动物的细胞和中尺度功能以及它们与更大的生态和环境影响相互作用的能力。
    A simple machine is a basic of device that takes mechanical advantage to apply force. Animals and plants self-assemble through the operation of a wide variety of simple machines. Embryos of different species actuate these simple machines to drive the geometric transformations that convert a disordered mass of cells into organized structures with discrete identities and function. These transformations are intrinsically coupled to sequential and overlapping steps of self-organization and self-assembly. The processes of self-organization have been explored through the molecular composition of cells and tissues and their information networks. By contrast, efforts to understand the simple machines underlying self-assembly must integrate molecular composition with the physical principles of mechanics. This primer is concerned with effort to elucidate the operation of these machines, focusing on the \"problem\" of morphogenesis. Advances in understanding self-assembly will ultimately connect molecular-, subcellular-, cellular- and meso-scale functions of plants and animals and their ability to interact with larger ecologies and environmental influences.
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  • 文章类型: Journal Article
    形态发生是雕刻组织和器官的最终功能形式的物理过程。值得注意的是,陆生脊椎动物的肺在不同物种之间的形态差异很大,尽管提供相同的传输氧气和二氧化碳的功能。这些不同的形式源于不同的物理过程,通过这些过程,胚胎肺的上皮对其周围的间充质微环境的机械特性作出反应。在这里,我们比较了指导哺乳动物肺上皮折叠的物理过程,鸟,和爬行动物,并提出了一个概念框架,以协调保守的分子信号如何在这些物种中产生不同的机械力。
    Morphogenesis is a physical process that sculpts the final functional forms of tissues and organs. Remarkably, the lungs of terrestrial vertebrates vary dramatically in form across species, despite providing the same function of transporting oxygen and carbon dioxide. These divergent forms arise from distinct physical processes through which the epithelium of the embryonic lung responds to the mechanical properties of its surrounding mesenchymal microenvironment. Here we compare the physical processes that guide folding of the lung epithelium in mammals, birds, and reptiles, and suggest a conceptual framework that reconciles how conserved molecular signaling generates divergent mechanical forces across these species.
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  • 文章类型: Journal Article
    唾液腺经历分支形态发生,以形成具有许多分泌唾液的腺泡单元的树状结构,全部由分层导管系统连接。通过分支形态发生产生的扩张性上皮表面充当有效产生和递送唾液的结构基础。这里,我们阐明了唾液腺形态发生的过程,强调力学的作用。在结构上,正在发育的唾液腺的特征是由基底膜紧密包裹的复层上皮,它又被间质包围,由间质基质和间充质细胞的密集网络组成。不同的细胞类型和细胞外基质赋予这个发育中的器官有组织,然而空间变化的机械性能。例如,芽的表面上皮片由于其高细胞运动性和弱细胞间粘附性而具有高度的流动性,使其高度柔韧。相比之下,芽的内核更坚硬,以细胞运动性降低和细胞间粘附力强为特征,这可能为组织提供结构支撑。表面上皮片和内核之间的相互作用引起出芽形态发生。此外,基底膜和间充质提供了机械约束,可能在确定完全成熟的唾液腺的高阶结构中起关键作用。
    The salivary gland undergoes branching morphogenesis to elaborate into a tree-like structure with numerous saliva-secreting acinar units, all joined by a hierarchical ductal system. The expansive epithelial surface generated by branching morphogenesis serves as the structural basis for the efficient production and delivery of saliva. Here, we elucidate the process of salivary gland morphogenesis, emphasizing the role of mechanics. Structurally, the developing salivary gland is characterized by a stratified epithelium tightly encased by the basement membrane, which is in turn surrounded by a mesenchyme consisting of a dense network of interstitial matrix and mesenchymal cells. Diverse cell types and extracellular matrices bestow this developing organ with organized, yet spatially varied mechanical properties. For instance, the surface epithelial sheet of the bud is highly fluidic due to its high cell motility and weak cell-cell adhesion, rendering it highly pliable. In contrast, the inner core of the bud is more rigid, characterized by reduced cell motility and strong cell-cell adhesion, which likely provide structural support for the tissue. The interactions between the surface epithelial sheet and the inner core give rise to budding morphogenesis. Furthermore, the basement membrane and the mesenchyme offer mechanical constraints that could play a pivotal role in determining the higher-order architecture of a fully mature salivary gland.
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  • 文章类型: Journal Article
    目的:已经在多种生物中广泛研究了牙冠形态发生的模式级联模型,以阐明围绕犬齿后形态的进化史。当前的研究是第一个使用大型现代人类样本来检查下落叶和永久性磨牙的牙冠配置是否与模型得出的期望相符的研究。这项研究有两个主要目标:1)确定同色异谱和抗异谱对的大小是否显着不同,附件性状表达,和相对插入间距,和2)评估早期形成的尖点之间的相对距离是否解释了观察到的副尖点表达的变化。
    方法:牙齿尺寸,插入距离,从代表哈佛所罗门群岛项目参与者的下颌牙模的3D扫描中收集形态特征表达数据。配对测试用于比较牙齿大小,附件性状表达,以及双齿形元形物和永久性抗药之间的相对插入距离。实施比例几率逻辑回归以研究较大的副尖点表达的几率如何随早期发展的尖点之间的距离而变化。
    结果:比较配对磨牙,牙齿大小和牙尖5表达存在显著差异。几个相对的插入距离是尖点6表达的重要预测因子,然而,尖点5和尖点7的结果与预期模式不匹配。这些发现支持先前的定量遗传结果,并表明相邻牙冠结构的发育代表了细胞领土和资源的零和分配。因此,这项研究有助于更好地了解人类落叶和恒磨牙冠变异的基础。
    OBJECTIVE: The patterning cascade model of crown morphogenesis has been studied extensively in a variety of organisms to elucidate the evolutionary history surrounding postcanine tooth form. The current research is the first to use a large modern human sample to examine whether the crown configuration of lower deciduous and permanent molars aligns with expectations derived from the model. This study has two main goals: 1) to determine if metameric and antimeric pairs significantly differ in size, accessory trait expression, and relative intercusp spacing, and 2) assess whether the relative distance among early-forming cusps accounts for observed variation in accessory cusp expression.
    METHODS: Tooth size, intercusp distance, and morphological trait expression data were collected from 3D scans of mandibular dental casts representing participants of the Harvard Solomon Islands Project. Paired tests were utilized to compare tooth size, accessory trait expression, and relative intercusp distance between diphyodont metameres and permanent antimeres. Proportional odds logistic regression was implemented to investigate how the odds of greater accessory cusp expression vary as a function of the distance between early-developing cusps.
    RESULTS: Comparing paired molars, significant differences were identified for tooth size and cusp 5 expression. Several relative intercusp distances emerged as important predictors of cusp 6 expression, however, results for cusp 5 and cusp 7 did not match expected patterns. These findings support previous quantitative genetic results and suggest the development of neighboring crown structures represents a zero-sum partitioning of cellular territory and resources. As such, this study contributes to a better understanding of the foundations of deciduous and permanent molar crown variation in humans.
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  • 文章类型: Journal Article
    机械敏感性压电通道调节细胞分裂,细胞挤压,细胞死亡。然而,Piezo在调节器官发生方面的系统级功能仍然知之甚少。这里,我们证明Piezo通过整合活成像实验与药理学和遗传扰动以及计算模型来控制上皮细胞拓扑以确保精确的器官生长。值得注意的是,压倒或压倒增加了两侧机翼大小的不对称性。基于组织区室级扰动之间或整个组织级遗传扰动群体之间的比较,可以将压电的多方面函数解构为自主或非自主。通过调节压电通道激活所需的截止张力来定位细胞增殖和凋亡调节的计算模型解释了由压电表达水平的扰动引起的关键细胞和组织表型。我们的发现表明,Piezo可促进调节上皮拓扑结构的鲁棒性,并且对于精确控制器官大小是必需的。
    Mechanosensitive Piezo channels regulate cell division, cell extrusion, and cell death. However, systems-level functions of Piezo in regulating organogenesis remain poorly understood. Here, we demonstrate that Piezo controls epithelial cell topology to ensure precise organ growth by integrating live-imaging experiments with pharmacological and genetic perturbations and computational modeling. Notably, the knockout or knockdown of Piezo increases bilateral asymmetry in wing size. Piezo\'s multifaceted functions can be deconstructed as either autonomous or non-autonomous based on a comparison between tissue-compartment-level perturbations or between genetic perturbation populations at the whole-tissue level. A computational model that posits cell proliferation and apoptosis regulation through modulation of the cutoff tension required for Piezo channel activation explains key cell and tissue phenotypes arising from perturbations of Piezo expression levels. Our findings demonstrate that Piezo promotes robustness in regulating epithelial topology and is necessary for precise organ size control.
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