Mendelian randomization study

孟德尔随机化研究
  • 文章类型: Journal Article
    背景:先前的观察性研究表明虚弱与关节炎之间存在复杂的关联。
    目的:探讨虚弱指数与常见关节炎发病风险之间的遗传因果关系。
    方法:我们进行了大规模孟德尔随机化(MR)分析,以评估英国生物库(UKB)中虚弱指数与常见关节炎风险的关联,还有FinnGen生物库.关于脆弱的全基因组关联统计摘要,由脆弱指数定义,和常见的关节炎,包括类风湿性关节炎(RA),骨关节炎(OA),银屑病关节炎(PSA),强直性脊柱炎(AS)。逆方差权重(IVW)方法作为主要的MR分析。还进行了异质性测试和敏感性分析。
    结果:我们的结果表明虚弱指数与OA风险增加之间存在遗传关联,UKB中的比值比(OR)IVW为1.03(95%置信区间[CI]:1.01-1.05;P=0.007),FinnGen的ORIVW为1.55(95%CI:1.16-2.07;P=0.003)。对于RA,UKB和FinnGen的ORIVW分别为1.03(1.01-1.05,P=0.006)和4.57(1.35-96.49;P=0.025)。对于PSA,虚弱指数与PSA相关(ORIVW=4.22(1.21-14.67),P=0.023)在FinnGen中,不在UKB中(P>0.05)。然而,虚弱指数与AS无相关性(P>0.05)。这些结果在敏感性评估中保持一致。
    结论:这项研究证明了一个潜在的因果关系,即虚弱指数的遗传倾向与关节炎的风险有关,尤其是RA,OA,PSA,不是,而是as。我们的发现丰富了该主题的现有知识体系。
    BACKGROUND: Previous observational studies indicated a complex association between frailty and arthritis.
    OBJECTIVE: To investigate the genetic causal relationship between the frailty index and the risk of common arthritis.
    METHODS: We performed a large-scale Mendelian randomization (MR) analysis to assess frailty index associations with the risk of common arthritis in the UK Biobank (UKB), and the FinnGen Biobank. Summary genome-wide association statistics for frailty, as defined by the frailty index, and common arthritis including rheumatoid arthritis (RA), osteoarthritis (OA), psoriatic arthritis (PSA), and ankylosing spondylitis (AS). The inverse-variance weight (IVW) method served as the primary MR analysis. Heterogeneity testing and sensitivity analysis were also conducted.
    RESULTS: Our results denoted a genetic association between the frailty index with an increased risk of OA, the odds ratio (OR)IVW in the UKB was 1.03 (95% confidence interval [CI]: 1.01-1.05; P = 0.007), and ORIVW was 1.55 (95% CI: 1.16-2.07; P = 0.003) in the FinnGen. For RA, the ORIVW from UKB and FinnGen were 1.03 (1.01-1.05, P = 0.006) and 4.57 (1.35-96.49; P = 0.025) respectively. For PSA, the frailty index was associated with PSA (ORIVW = 4.22 (1.21-14.67), P = 0.023) in FinnGen, not in UKB (P > 0.05). However, no association was found between frailty index and AS (P > 0.05). These results remained consistent across sensitivity assessments.
    CONCLUSIONS: This study demonstrated a potential causal relationship that genetic predisposition to frailty index was associated with the risk of arthritis, especially RA, OA, and PSA, not but AS. Our findings enrich the existing body of knowledge on the subject matter.
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  • 文章类型: Journal Article
    目的:氧化应激与特应性皮炎(AD)密切相关,增加抗氧化剂的摄入量可能会降低其症状的风险或减轻其症状。然而,这个论点是有争议的。因此,我们进行了孟德尔随机化(MR)分析,以探讨膳食抗氧化剂维生素摄入量与AD之间的因果关系.
    方法:我们应用MR分析来检查膳食抗氧化剂维生素摄入量(维生素C,维生素E,胡萝卜素,和视黄醇)和AD。抗氧化维生素摄入和AD的全基因组关联研究(GWAS)汇总数据来自IEUOpenGWAS数据库和英国生物库。我们的研究由两大部分组成,MR分析以检测暴露与结果之间的因果关系,和敏感性分析作为补充证据,验证结果的稳健性。
    结果:结果显示维生素E摄入量与AD之间存在因果关系(p=0.038,OR95%CI=0.745-0.992)。然而,其他三种维生素(维生素C,胡萝卜素,和视黄醇)和AD(p=0.507,OR95%CI=0.826-1.099)(p=0.890,OR95%CI=0.864-1.184)(p=0.492,OR95%CI=0.893-1.264)。在敏感性分析中,没有发现单核苷酸多态性(SNP)具有异质性和多效性(p>0.05)。
    结论:分析表明,饮食中摄入维生素E可能会降低AD的风险。相反,摄入维生素C,视黄醇,胡萝卜素与AD无因果关系。虽然摄入维生素E可以预防AD,摄入膳食抗氧化维生素来预防或治疗AD是不必要的。
    OBJECTIVE: Oxidative stress is strongly associated with atopic dermatitis (AD), and increased antioxidant intake could potentially reduce the risk of or alleviate its symptoms. However, the argument is disputed. Therefore, we conducted a Mendelian randomization (MR) analysis to explore the causal relationship between dietary antioxidant vitamin intake and AD.
    METHODS: We applied MR analysis to examine the causative association between dietary antioxidant vitamin intake (vitamin C, vitamin E, carotene, and retinol) and AD. The genome-wide association study (GWAS) summary data for antioxidant vitamins intake and AD were obtained from the IEU OpenGWAS database and the UK biobank. Our study consisted of two major parts, MR analysis to detect the causal relationship between exposure and outcome, and sensitivity analysis as supplemental evidence to verify the robustness of the results.
    RESULTS: The results revealed a suggestive causal relationship between vitamin E intake and AD (p = 0.038, OR 95% CI = 0.745-0.992). However, there was no causal relationship between the other three vitamins (vitamin C, carotene, and retinol) and AD (p = 0.507, OR 95% CI = 0.826-1.099) (p = 0.890, OR 95% CI = 0.864-1.184) (p = 0.492, OR 95% CI = 0.893-1.264). None of the single nucleotide polymorphisms (SNPs) were detected as heterogeneous and pleiotropy in the sensitivity analysis (p > 0.05).
    CONCLUSIONS: The analysis suggested that dietary intake of vitamin E may potentially lower the risk of AD. Conversely, intake of vitamin C, retinol, and carotene is not causally related to AD. Although vitamin E intake could be protective against AD, intake of dietary antioxidant vitamins to prevent or treat AD is not necessary.
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  • 文章类型: Journal Article
    阿尔茨海默病(AD)是痴呆的主要原因,以β淀粉样蛋白(Aβ)和过度磷酸化的tau蛋白的积累为特征,导致神经炎症和神经元损伤。免疫系统在AD发病机制中的作用日益得到认可,通过使用孟德尔随机化(MR)方法,促使人们探索免疫细胞与AD之间的因果关系。
    利用来自欧洲队列的全基因组关联研究(GWAS)数据,我们进行了一项MR研究,以探讨免疫细胞表型与AD之间的因果关系.我们选择了与全基因组意义阈值的免疫细胞性状相关的单核苷酸多态性(SNP),并应用了各种MR方法,包括艾格先生,加权中位数,和逆方差加权分析,评估731种免疫表型与AD之间的因果关系。
    我们的MR分析确定了15种与AD发病机制有显著因果关系的免疫细胞类型。值得注意的是,CD28-CD4-CD8-T细胞的绝对计数和B细胞上HLA-DR的表达与抗AD的保护作用有关,而其他13种免疫表型被鉴定为导致该疾病的危险因素。AD对免疫表型性状的因果效应主要是阴性的,这意味着AD可能会损害免疫细胞的功能。通过独立数据集进行验证,例如FinnGen和GCST90027158,证实了6种特异性免疫细胞与AD之间的因果关系。
    这项全面的MR研究阐明了不同免疫表型性状与AD之间复杂的因果关系网络,为AD的免疫发病机制提供新的见解。研究结果表明,潜在的免疫靶标可以用于早期诊断,疾病监测,和治疗干预。
    UNASSIGNED: Alzheimer\'s disease (AD) is a leading cause of dementia, characterized by the accumulation of amyloid-beta (Aβ) and hyperphosphorylated tau proteins, leading to neuroinflammation and neuronal damage. The role of the immune system in AD pathogenesis is increasingly recognized, prompting an exploration of the causal relationship between immune cells and AD by using Mendelian randomization (MR) approaches.
    UNASSIGNED: Utilizing genome-wide association study (GWAS) data from European cohorts, we conducted an MR study to investigate the causal links between immune cell phenotypes and AD. We selected single nucleotide polymorphisms (SNPs) associated with immune cell traits at a genome-wide significance threshold and applied various MR methods, including MR Egger, Weighted median, and inverse variance weighted analysis, to assess the causality between 731 immune phenotypes and AD.
    UNASSIGNED: Our MR analysis identified 15 immune cell types with significant causal relationships to AD pathogenesis. Notably, the absolute count of CD28-CD4-CD8- T cells and the expression of HLA DR on B cells were linked to a protective effect against AD, while 13 other immune phenotypes were identified as contributing to the risk factors for the disease. The causal effects of AD on immunophenotypic traits are predominantly negative, implying that AD may impair the functionality of immune cells. Validation through independent datasets, such as FinnGen and GCST90027158, confirmed the causal association between six specific immune cells and AD.
    UNASSIGNED: This comprehensive MR study elucidates the intricate network of causal relationships between diverse immunophenotypic traits and AD, providing novel insights into the immunopathogenesis of AD. The findings suggest potential immunological targets that could be leveraged for early diagnosis, disease monitoring, and therapeutic intervention.
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  • 文章类型: Published Erratum
    [这修正了文章DOI:10.3389/fmicb.2023.1190866。].
    [This corrects the article DOI: 10.3389/fmicb.2023.1190866.].
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  • 文章类型: Journal Article
    通过孟德尔随机化(MR)确定生活方式行为和体脂分布对糖尿病微血管并发症的因果关系。
    遗传变异与生活方式行为显著相关,腹部肥胖,从英国生物银行(UKB)和FinnGen中提取了全身性肥胖和糖尿病微血管并发症.逆方差加权(IVW)方法被认为是主要方法。主要结果以每标准差(SD)增加的比值比(OR)表示,并进行了一系列敏感性分析,以验证结果的稳定性。
    吸烟与糖尿病视网膜病变的发生呈正相关(OR=1.16;95CI:1.04-1.30;p=0.01)。所有代表腹部肥胖的指标都与糖尿病微血管并发症有统计学意义的因果关系。关于广泛性肥胖,体重指数(BMI)与糖尿病肾病之间存在显着因果关系(OR=1.92;95CI:1.58-2.33;p<0.001),糖尿病视网膜病变(OR=1.27;95CI:1.15-1.40;p<0.001),和糖尿病神经病变(OR=2.60;95CI:1.95-3.45;p<0.001)。其他指标包括腿部脂肪量(左),和手臂脂肪量(左)也与糖尿病微血管并发症有显著的正因果关系。
    我们的研究结果表明,吸烟与糖尿病视网膜病变的发生具有遗传因果关系,而不是糖尿病肾病和糖尿病神经病变。此外,腹型肥胖和全身型肥胖都是糖尿病微血管并发症的危险因素.要注意,以腰围(WC)为代表的腹部肥胖是最重要的危险因素。
    UNASSIGNED: To determine the causal correlations of lifestyle behaviours and body fat distribution on diabetic microvascular complications through a Mendelian Randomization (MR).
    UNASSIGNED: Genetic variants significantly associated with lifestyle behaviours, abdominal obesity, generalized obesity and diabetic microvascular complications were extracted from the UK Biobank (UKB) and FinnGen. The inverse variance weighted (IVW) method was regarded as the primary method. The main results were presented in odds ratio (OR) per standard deviation (SD) increase, and a series of sensitivity analyses were also conducted to validate the stability of the results.
    UNASSIGNED: There was a positive causal correlation between smoking and the development of diabetic retinopathy (OR = 1.16; 95%CI: 1.04-1.30; p = 0.01). All of the indicators representing abdominal obesity had a statistically significant causal association with diabetic microvascular complications. Concerning generalized obesity, there were significant causal associations of body mass index (BMI) on diabetic nephropathy (OR = 1.92; 95%CI: 1.58-2.33; p < 0.001), diabetic retinopathy (OR = 1.27; 95%CI: 1.15-1.40; p < 0.001), and diabetic neuropathy (OR = 2.60; 95%CI: 1.95-3.45; p < 0.001). Other indicators including leg fat mass (left), and arm fat mass (left) also had a significant positive causality with diabetic microvascular complications.
    UNASSIGNED: Our findings suggested that smoking has a genetically causal association with the development of diabetic retinopathy rather than diabetic nephropathy and diabetic neuropathy. In addition, both abdominal obesity and generalized obesity are risk factors for diabetic microvascular complications. To note, abdominal obesity represented by waist circumference (WC) is the most significant risk factor.
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  • 文章类型: Journal Article
    观察性研究表明ACE2(血管紧张素转换酶2)与肺癌之间存在联系。然而,如果混杂变量干扰链接,则不明显。因此,我们旨在明确ACE2与肺癌风险之间的关系.
    为了开发遗传工具,我们使用统计学显著的标准选择了与ACE2基本相关的SNP.然后从肺癌GWAS数据集中获取相关的SNP用于另外的研究。之后,我们采用双样本孟德尔随机化(MR)来确定ACE2是否与患肺癌的风险有因果关系.为了调查因果关系的方向,我们还进行了反向MR分析.
    根据我们的发现,有强有力的证据表明ACE2与患肺癌的机率降低有关(比值比:0.94;95%置信区间:0.90-0.98;P=0.0016).IVW方法,主要的MR分析,在任何分析中都没有受到异质性的影响,根据Cochrane的Q检验(PCochrane'sQ=0.207)。MR-Egger截距(P截距=0.622)在任何研究中均未显示水平多效性。MR-PRESSO全局检验未检测到异常SNP(P全局检验=0.191)。进行了留一法分析,结果显示结果稳定。通过反向MR分析得出肺癌和ACE2之间的非重要因果关系估计。
    MR调查显示ACE2与患肺癌的风险之间存在显著的因果关系。这些发现可能会对旨在降低肺癌发病率的公共卫生措施产生影响。
    UNASSIGNED: Observational studies suggest a connection between ACE2 (angiotensin-converting enzyme 2) and lung cancer. However, it\'s not apparent if confounding variables are interfering with the link. Therefore, we aimed to define the relationships between ACE2 and the risk of lung cancer.
    UNASSIGNED: With the aim of developing genetic tools, we selected SNPs substantially associated with ACE2 using a statistically significant criterion. The relevant SNPs were then taken from the lung cancer GWAS dataset for additional research. After that, we used two-sample Mendelian randomization (MR) to ascertain if ACE2 is causally linked to the risk of developing lung cancer. To investigate the causal links\' directions, we also performed a reverse MR analysis.
    UNASSIGNED: According to our findings, there is strong evidence that ACE2 is linked to a decreased chance of developing lung cancer (odds ratio: 0.94; 95% confidence interval: 0.90-0.98; P = 0.0016). The IVW method, the major MR analysis, was not impacted by heterogeneity in any of the analyses, according to Cochrane\'s Q test ( P Cochran e \' sQ = 0.207). The MR-Egger intercept (P intercept = 0.622) showed no indication of horizontal pleiotropy in any of the investigations. Outlier SNPs were not detected by the MR-PRESSO global test (P globaltest = 0.191). The leave-one-out analysis was performed, and the results showed a steady outcome. Nonsignificant causal estimates between lung cancer and ACE2 were produced by reverse MR analysis.
    UNASSIGNED: MR investigation revealed a significant causal link between ACE2 and the risk of getting lung cancer. These findings may have implications for public health measures aimed at reducing the incidence of lung cancer.
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  • 文章类型: Journal Article
    观察性研究表明,氧化应激(OS)与帕金森氏病(PD)有关。然而,这些观察结果是否反映了因果关系在很大程度上是未知的。为了测试这个,我们进行了双样本双向孟德尔随机化(MR)分析,以研究OS生物标志物和PD之间的因果关系.
    我们选择了与过氧化氢酶相关的单核苷酸多态性(SNP)的汇总统计数据(n=13),谷胱甘肽过氧化物酶(n=12),超氧化物歧化酶(n=13),维生素A(n=7),维生素C(n=10),维生素E(n=12),维生素B12(n=8),叶酸(n=14),铜(n=6),锌(n=7),和铁(n=23)水平,以及来自国际帕金森病基因组学联盟(IPDGC,33,674例和449,056例对照)。进行了逆方差加权(IVW)MR分析以估计OS与PD的关联。进一步进行反向MR分析以预测PD对上述OS生物标志物的因果效应。
    至于PD,IVW方法表明锌(Zn)水平与PD显着相关(OR=1.107,95%CI1.013-1.211;p=0.025),这与加权中位数分析的结果一致。此外,在敏感性分析中,结果保持一致且稳健.然而,过氧化氢酶没有显著关联,谷胱甘肽过氧化物酶,超氧化物歧化酶,维生素A,维生素C,维生素E,维生素B12,叶酸,铜,或PD的铁。至于OS,我们的反向MR分析也不支持PD责任对OS的因果影响.
    MR研究支持锌对PD的因果关系。这些发现可能为针对OS和PD的预防策略和干预提供信息。
    UNASSIGNED: Observational studies have shown that oxidative stress (OS) is associated with Parkinson\'s disease (PD). However, whether such observations reflect cause-effect remains largely unknown. To test this, we performed a two-sample bidirectional Mendelian randomization (MR) analysis to investigate the causal-effects between OS biomarkers and PD.
    UNASSIGNED: We selected summary statistics data for single-nucleotide polymorphisms (SNPs) associated with catalase (n = 13), glutathione peroxidases (n = 12), superoxide dismutase (n = 13), vitamin A (n = 7), vitamin C (n = 10), vitamin E (n = 12), vitamin B12 (n = 8), folate (n = 14), copper (n = 6), Zinc (n = 7), and iron (n = 23) levels, and the corresponding data for PD from the International Parkinson Disease Genomics Consortium (IPDGC, 33,674 cases and 449,056 controls). Inverse-variance weighted (IVW) MR analyses were conducted to estimate associations of OS with PD. Reverse MR analysis was further performed to predict the causal effects of PD on the above OS biomarkers.
    UNASSIGNED: As for PD, the IVW method suggested that the Zinc (Zn) levels was significantly associated with PD (OR = 1.107, 95% CI 1.013-1.211; p = 0.025), which is consistent with results from the weighted median analyses. Moreover, the results remained consistent and robust in the sensitivity analysis. However, there were no significant associations of catalase, glutathione peroxidases, superoxide dismutase, vitamin A, vitamin C, vitamin E, vitamin B12, folate, copper, or iron with PD. As for OS, our reverse MR analysis also did not support a causal effect of liability to PD on OS.
    UNASSIGNED: The MR study supported the causal effect of Zn on PD. These findings may inform prevention strategies and interventions directed toward OS and PD.
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  • 文章类型: Journal Article
    背景:步行是个人日常生活中最普遍的身体活动,与身体机能和衰老过程密切相关。尽管如此,行走和衰老之间的确切因果关系仍未被探索。表观遗传时钟成为最有前途的衰老生物学指标,能够反映人体的生物学年龄,并促进对步行和衰老之间的关联的研究。我们的主要目标是调查表观遗传年龄加速(EAA)步行的因果影响。
    方法:我们进行了一项双样本双向孟德尔随机化(MR)研究,以调查步行与EAA之间的因果关系。步行和休闲久坐行为数据来自英国生物银行,而EAA数据来自28个队列.使用几种方法进行MR分析,包括逆方差加权(IVW),加权中位数,MR-Egger,和稳健的调整后的配置文件得分(RAPS)。为了确保我们发现的稳健性,我们进行了敏感性分析,其中涉及MR-Egger拦截测试,Cochran的Q测试,和MR-PRESSO,考虑和减轻潜在的多效性。
    结果:IVWMR结果表明,通常的步行速度对GrimAge有重大影响(BETA=-1.84,95%CI(-2.94,-0.75)),表型(BETA=-1.57,95%CI(-3.05,-0.08)),Horvath(BETA=-1.09(-2.14,-0.04)),和Hannum(BETA=-1.63,95%CI(-2.70,-0.56))。通常的步行速度与表观遗传衰老加速(EAA)的延迟显着相关(P<0.05)。此外,该基因预测的效应方向在RAPS结局和敏感性MR分析中保持一致.其他步行条件之间缺乏稳健的因果关系,如步行持续时间和步行频率,EAA(P>0.05)。
    结论:我们的证据表明,较高的常规步行速度与所有四个经典表观遗传时钟加速度的加速度的减速有关。
    BACKGROUND: Walking stands as the most prevalent physical activity in the daily lives of individuals and is closely associated with physical functioning and the aging process. Nonetheless, the precise cause-and-effect connection between walking and aging remains unexplored. The epigenetic clock emerges as the most promising biological indicator of aging, capable of mirroring the biological age of the human body and facilitating an investigation into the association between walking and aging. Our primary objective is to investigate the causal impact of walking with epigenetic age acceleration (EAA).
    METHODS: We conducted a two-sample two-way Mendelian randomization (MR) study to investigate the causal relationship between walking and EAA. Walking and Leisure sedentary behavior data were sourced from UK Biobank, while EAA data were gathered from a total of 28 cohorts. The MR analysis was carried out using several methods, including the inverse variance weighted (IVW), weighted median, MR-Egger, and robust adjusted profile score (RAPS). To ensure the robustness of our findings, we conducted sensitivity analyses, which involved the MR-Egger intercept test, Cochran\'s Q test, and MR-PRESSO, to account for and mitigate potential pleiotropy.
    RESULTS: The IVW MR results indicate a significant impact of usual walking pace on GrimAge (BETA = - 1.84, 95% CI (- 2.94, - 0.75)), PhenoAge (BETA = - 1.57, 95% CI (- 3.05, - 0.08)), Horvath (BETA = - 1.09 (- 2.14, - 0.04)), and Hannum (BETA = - 1.63, 95% CI (- 2.70, - 0.56)). Usual walking pace is significantly associated with a delay in epigenetic aging acceleration (EAA) (P < 0.05). Moreover, the direction of effect predicted by the gene remained consistent across RAPS outcomes and sensitivity MR analyses. There is a lack of robust causal relationships between other walking conditions, such as walking duration and walking frequency, on EAA (P > 0.05).
    CONCLUSIONS: Our evidence demonstrates that a higher usual walking pace is associated with a deceleration of the acceleration of all four classical epigenetic clocks acceleration.
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  • 文章类型: Journal Article
    现有文献尚未清楚地阐明SARS-CoV-2感染是否会增加帕金森病的发病率或帕金森病患者是否更容易受到SARS-CoV-2感染的影响。为了澄清这个问题,这项研究采用遗传流行病学方法来调查这种关联。
    本研究采用双样本孟德尔随机化分析。主要分析采用逆方差加权(IVW)方法,辅以包括MR-Egger回归在内的二次分析,加权中位数,IVW径向法,和加权模式,评价帕金森病与SARS-CoV-2感染的双向因果关系。
    IVW结果显示SARS-CoV-2易感性之间没有遗传因果关系,住院率和严重程度与帕金森病。(IVW法:p=0.408OR=1.1095%CI:0.87~1.39;p=0.744OR=1.1195%CI:0.94~1.09;p=0.436OR=1.0595%CI:0.93~1.17)。帕金森病在遗传上与对新冠感染的易感性无关,住院率,和严重程度(IVW方法:p=0.173OR=1.0195%CI:0.99〜1.03;p=0.109OR=1.0595%CI:0.99〜1.12;p=0.209OR=1.0395%CI:0.99〜1.07)。MR-Egger回归,加权中位数,IVW径向法,和加权模式结果与IVW方法的结果一致。
    这项研究不支持帕金森病与SARS-CoV-2感染之间的遗传联系,在以前的队列研究和观察性研究中观察到的关联可能是由于其他混杂因素。
    UNASSIGNED: Existing literature has not clearly elucidated whether SARS-CoV-2 infection increases the incidence of Parkinson\'s disease or if Parkinson\'s disease patients are more susceptible to the effects of SARS-CoV-2 infection. To clarify the issue, this study employs a genetic epidemiological approach to investigate the association.
    UNASSIGNED: This study utilizes a two-sample Mendelian randomization analysis. The primary analysis employs the inverse variance-weighted (IVW) method, supplemented by secondary analyses including MR-Egger regression, weighted median, IVW radial method, and weighted mode, to evaluate the bidirectional causal relationship between Parkinson\'s disease and SARS-CoV-2 infection.
    UNASSIGNED: IVW results showed no genetic causality between SARS-CoV-2 susceptibility, hospitalization rate and severity and Parkinson\'s disease. (IVW method: p = 0.408 OR = 1.10 95% CI: 0.87 ~ 1.39; p = 0.744 OR = 1.11 95% CI: 0.94 ~ 1.09; p = 0.436 OR = 1.05 95% CI: 0.93 ~ 1.17). Parkinson\'s disease was not genetically associated with susceptibility to new crown infections, hospitalization rates, and severity (IVW method: p = 0.173 OR = 1.01 95% CI: 0.99 ~ 1.03; p = 0.109 OR = 1.05 95% CI: 0.99 ~ 1.12; p = 0.209 OR = 1.03 95% CI: 0.99 ~ 1.07). MR-Egger regression, weighted median, IVW radial method, and weighted mode results are consistent with the results of the IVW method.
    UNASSIGNED: This study does not support a genetic link between Parkinson\'s disease and SARS-CoV-2 infection, and the association observed in previous cohort studies and observational studies may be due to other confounding factors.
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  • 文章类型: Journal Article
    IgA肾病(IgAN),一种全球普遍的肾小球肾炎,表现出复杂的发病机制。组织蛋白酶,溶酶体内的半胱氨酸蛋白酶,涉及各种生理和病理过程,包括肾脏疾病。先前的观察性研究表明,组织蛋白酶和IgAN之间存在潜在的联系,然而确切的因果关系尚不清楚.
    我们使用公开可用的遗传数据进行了全面的双向和多变量孟德尔随机化(MR)研究,以系统地探索组织蛋白酶和IgAN之间的因果关系。此外,采用免疫组织化学(IHC)染色和酶联免疫吸附试验(ELISA)评估IgAN患者肾组织和血清中组织蛋白酶的表达水平。我们通过基因集变异分析(GSVA)研究了潜在的机制,基因集富集分析(GSEA),和免疫细胞浸润分析。还进行了分子对接和虚拟筛选以通过药物重新定位来鉴定潜在的候选药物。
    单变量MR分析显示组织蛋白酶S(CTSS)水平升高与IgAN风险升高之间存在显著关联。这通过使用逆方差加权(IVW)方法估计的1.041(95%CI=1.009-1.073,P=0.012)的比值比(OR)得到证明。在多变量MR分析中,即使在调整了其他组织蛋白酶之后,CTSS水平升高继续显示与IgAN风险增加密切相关(IVWP=0.020,OR=1.037,95%CI=1.006~1.069).然而,反向MR分析未确定IgAN与各种组织蛋白酶之间的因果关系.IHC和ELISA结果显示,与对照组相比,IgAN患者的肾组织和血清中CTSS显著过表达,与其他一些原发性肾脏疾病如膜性肾病相比,这种高表达是IgAN特有的,微小病变和局灶节段肾小球硬化。免疫细胞浸润的调查,GSEA,和GSVA强调了CTSS表达在IgAN中观察到的免疫失调中的作用。分子对接和虚拟筛选精确定位甲磺酸Camostat,c-Kit-IN-1和Mocetinostat是靶向CTSS的首选药物。
    CTSS水平升高与IgAN风险增加相关,该酶在IgAN患者血清和肾组织中明显过表达。CTSS可能作为诊断生物标志物,为诊断和治疗IgAN提供了新的途径。
    UNASSIGNED: IgA nephropathy (IgAN), a prevalent form of glomerulonephritis globally, exhibits complex pathogenesis. Cathepsins, cysteine proteases within lysosomes, are implicated in various physiological and pathological processes, including renal conditions. Prior observational studies have suggested a potential link between cathepsins and IgAN, yet the precise causal relationship remains unclear.
    UNASSIGNED: We conducted a comprehensive bidirectional and multivariable Mendelian randomization (MR) study using publicly available genetic data to explore the causal association between cathepsins and IgAN systematically. Additionally, immunohistochemical (IHC) staining and enzyme-linked immunosorbent assay (ELISA) were employed to evaluate cathepsin expression levels in renal tissues and serum of IgAN patients. We investigated the underlying mechanisms via gene set variation analysis (GSVA), gene set enrichment analysis (GSEA), and immune cell infiltration analysis. Molecular docking and virtual screening were also performed to identify potential drug candidates through drug repositioning.
    UNASSIGNED: Univariate MR analyses demonstrated a significant link between increased cathepsin S (CTSS) levels and a heightened risk of IgAN. This was evidenced by an odds ratio (OR) of 1.041 (95% CI=1.009-1.073, P=0.012) as estimated using the inverse variance weighting (IVW) method. In multivariable MR analysis, even after adjusting for other cathepsins, elevated CTSS levels continued to show a strong correlation with an increased risk of IgAN (IVW P=0.020, OR=1.037, 95% CI=1.006-1.069). However, reverse MR analyses did not establish a causal relationship between IgAN and various cathepsins. IHC and ELISA findings revealed significant overexpression of CTSS in both renal tissues and serum of IgAN patients compared to controls, and this high expression was unique to IgAN compared with several other primary kidney diseases such as membranous nephropathy, minimal change disease and focal segmental glomerulosclerosis. Investigations into immune cell infiltration, GSEA, and GSVA highlighted the role of CTSS expression in the immune dysregulation observed in IgAN. Molecular docking and virtual screening pinpointed Camostat mesylate, c-Kit-IN-1, and Mocetinostat as the top drug candidates for targeting CTSS.
    UNASSIGNED: Elevated CTSS levels are associated with an increased risk of IgAN, and this enzyme is notably overexpressed in IgAN patients\' serum and renal tissues. CTSS could potentially act as a diagnostic biomarker, providing new avenues for diagnosing and treating IgAN.
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