Ants

蚂蚁
  • 文章类型: Journal Article
    动物群体需要达成并保持共识,以最大程度地减少个体之间的冲突并防止群体分裂。共识挑战的一个很好的例子是合作运输,多个人合作一起移动一个大项目。这种行为,只由蚂蚁和人类定期展示,要求个人同意向哪个方向移动。不像人类,蚂蚁不能使用口头交流,但很可能依靠私人信息和/或通过携带物品感知到的机械力来协调它们的行为。这里,我们研究了编织蚂蚁群体如何在使用系留对象协议的协作传输过程中达成共识,蚂蚁不得不运输一个用细绳拴在适当位置的猎物。该协议允许将知情蚂蚁的运动与不知情的个体的运动脱钩。我们表明,织工蚂蚁将所有小组成员的意见汇集在一起,以提高其导航准确性。我们使用对称破缺任务证实了这个结果,我们挑战蚂蚁在开放式走廊上航行。织草蚂蚁是第一个报告的蚂蚁物种使用“人群智慧”策略进行合作运输,证明共识机制可能因每个物种的生态而异。
    Animal groups need to achieve and maintain consensus to minimize conflict among individuals and prevent group fragmentation. An excellent example of a consensus challenge is cooperative transport, where multiple individuals cooperate to move a large item together. This behaviour, regularly displayed by ants and humans only, requires individuals to agree on which direction to move in. Unlike humans, ants cannot use verbal communication but most likely rely on private information and/or mechanical forces sensed through the carried item to coordinate their behaviour. Here, we investigated how groups of weaver ants achieve consensus during cooperative transport using a tethered-object protocol, where ants had to transport a prey item that was tethered in place with a thin string. This protocol allows the decoupling of the movement of informed ants from that of uninformed individuals. We showed that weaver ants pool together the opinions of all group members to increase their navigational accuracy. We confirmed this result using a symmetry-breaking task, in which we challenged ants with navigating an open-ended corridor. Weaver ants are the first reported ant species to use a \'wisdom-of-the-crowd\' strategy for cooperative transport, demonstrating that consensus mechanisms may differ according to the ecology of each species.
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  • 文章类型: Journal Article
    背景:高通量实验技术可以为生物医学研究中的通路扰动提供更深入的见解。因此,它们的使用对于识别分子靶标和随后开发各种疾病的合适治疗方法至关重要。对生成数据的经典解释,如差异基因表达和途径分析,在寻找基因-疾病关联时,忽略所研究基因之间的相互联系。鉴于这些互连是细胞过程的核心,最近有兴趣将它们纳入此类研究。后者允许检测基因相互作用网络中复杂表型的基因模块。现有的方法要么施加基于半径的限制,要么以对大型模块的统计偏差为代价自由增长模块。我们提出了一种启发式方法,灵感来自蚁群优化,使用基于距离的搜索约束和惩罚来应用基因级评分和模块识别,而不是基于半径的约束。
    结果:我们使用三个不同的神经退行性疾病的数据集测试并将我们的结果与其他方法进行比较。即老年痴呆症,帕金森,和亨廷顿,三个独立实验。我们报告了每种疾病的富集分析结果和基因水平评分的一致性。结果表明,与现有方法相比,所提出的方法通常显示出较好的稳定性。它在所有三个数据集中产生稳定且有意义的富集结果,这些数据集对控制比例和样本量具有不同的情况。
    结论:提出的基于网络的基因表达分析方法成功地鉴定了与某种疾病相关的失调基因模块。使用基于蚁群优化的启发式算法,我们执行基于距离的搜索,没有半径约束。实验结果支持我们的方法对高相关性模块进行优先级排序的有效性和稳定性。我们的工具可在github.com/GhadiElHasbani/ACOxGS上公开获得。git.
    BACKGROUND: High-throughput experimental technologies can provide deeper insights into pathway perturbations in biomedical studies. Accordingly, their usage is central to the identification of molecular targets and the subsequent development of suitable treatments for various diseases. Classical interpretations of generated data, such as differential gene expression and pathway analyses, disregard interconnections between studied genes when looking for gene-disease associations. Given that these interconnections are central to cellular processes, there has been a recent interest in incorporating them in such studies. The latter allows the detection of gene modules that underlie complex phenotypes in gene interaction networks. Existing methods either impose radius-based restrictions or freely grow modules at the expense of a statistical bias towards large modules. We propose a heuristic method, inspired by Ant Colony Optimization, to apply gene-level scoring and module identification with distance-based search constraints and penalties, rather than radius-based constraints.
    RESULTS: We test and compare our results to other approaches using three datasets of different neurodegenerative diseases, namely Alzheimer\'s, Parkinson\'s, and Huntington\'s, over three independent experiments. We report the outcomes of enrichment analyses and concordance of gene-level scores for each disease. Results indicate that the proposed approach generally shows superior stability in comparison to existing methods. It produces stable and meaningful enrichment results in all three datasets which have different case to control proportions and sample sizes.
    CONCLUSIONS: The presented network-based gene expression analysis approach successfully identifies dysregulated gene modules associated with a certain disease. Using a heuristic based on Ant Colony Optimization, we perform a distance-based search with no radius constraints. Experimental results support the effectiveness and stability of our method in prioritizing modules of high relevance. Our tool is publicly available at github.com/GhadiElHasbani/ACOxGS.git.
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  • 文章类型: Journal Article
    超过1.25亿年的蚂蚁-植物相互作用最终导致了生活史上最有趣的进化结果之一。MyrmectrumDuroiahirsuta(Rubiaceae)以与蚂蚁Myrmelachistaschumanni和其他几种物种的相互联系而闻名,主要是阿兹台克,在亚马逊西北部。虽然两种蚂蚁都为植物提供间接防御,只有M.schumanni在植物domatia中筑巢,并且具有从杂种植物中清除寄主树周围的独特行为,可能会增加其主机的资源可用性。根据一项为期12年的调查,我们询问是否只有M.schumanni或只有Aztecaspp的连续存在。有利于寄主树的生长和防御特性。我们发现M.schumanni的持续存在比使用Azteca的树木更好地改善了Duroia的相对生长速率和叶片抗剪切性。然而,叶食草动物,干物质含量,毛状体密度,所有树木的次生代谢产物产量相同。生存直接取决于蚂蚁的结合(当没有蚂蚁时,>94%的树木死亡)。这项研究扩展了我们对严格的蚂蚁-植物共生对田间寄主植物性状的长期影响的理解,并加强了D.hirsuta-M.的使用。Schumanni作为适用于动植物相互作用的生态协同进化研究的模型系统。
    Over 125 million years of ant-plant interactions have culminated in one of the most intriguing evolutionary outcomes in life history. The myrmecophyte Duroia hirsuta (Rubiaceae) is known for its mutualistic association with the ant Myrmelachista schumanni and several other species, mainly Azteca, in the north-western Amazon. While both ants provide indirect defences to plants, only M. schumanni nests in plant domatia and has the unique behaviour of clearing the surroundings of its host tree from heterospecific plants, potentially increasing resource availability to its host. Using a 12-year survey, we asked how the continuous presence of either only M. schumanni or only Azteca spp. benefits the growth and defence traits of host trees. We found that the continuous presence of M. schumanni improved relative growth rates and leaf shearing resistance of Duroia better than trees with Azteca. However, leaf herbivory, dry matter content, trichome density, and secondary metabolite production were the same in all trees. Survival depended directly on ant association (> 94% of trees died when ants were absent). This study extends our understanding of the long-term effects of strict ant-plant mutualism on host plant traits in the field and reinforces the use of D. hirsuta-M. schumanni as a model system suitable for eco-co-evolutionary research on plant-animal interactions.
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  • 文章类型: Journal Article
    中央地方觅食者,比如很多蚂蚁,利用他们巢穴周围的环境。它们的觅食范围是个体运动的函数,但是,大量觅食者的运动模式如何导致出现的殖民地觅食范围尚不清楚。这里,我们引入了一个具有随机复位的随机游走模型来描述搜索蚂蚁的运动。随机重置是指在随机时间将代理的位置空间重置到给定位置,这里是搜索蚂蚁的巢穴。我们研究了一系列重置机制的影响,并将模型的宏观预测与实验室和现场数据进行了比较。我们发现,所有返回机制都非常健壮地确保探索巢穴周围环境的侦察员将随着与巢穴的距离呈指数分布。我们还发现,搜索蚂蚁返回巢穴的概率降低与经验数据相符,随着觅食旅行次数的增加,侦察员会远离巢穴。我们的发现强调了重置随机游走模型对于描绘中央觅食者的运动和培育有关蚂蚁搜索行为的新颖问题的重要性。
    Central place foragers, such as many ants, exploit the environment around their nest. The extent of their foraging range is a function of individual movement, but how the movement patterns of large numbers of foragers result in an emergent colony foraging range remains unclear. Here, we introduce a random walk model with stochastic resetting to depict the movements of searching ants. Stochastic resetting refers to spatially resetting at random times the position of agents to a given location, here the nest of searching ants. We investigate the effect of a range of resetting mechanisms and compare the macroscopic predictions of our model to laboratory and field data. We find that all returning mechanisms very robustly ensure that scouts exploring the surroundings of a nest will be exponentially distributed with distance from the nest. We also find that a decreasing probability for searching ants to return to their nest is compatible with empirical data, resulting in scouts going further away from the nest as the number of foraging trips increases. Our findings highlight the importance of resetting random walk models for depicting the movements of central place foragers and nurture novel questions regarding the searching behaviour of ants.
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  • 文章类型: Journal Article
    结论:蚂蚁,但不是菌根,对马铃薯植物上的昆虫咀嚼草食动物有重大影响。然而,没有证据表明对食草动物的相互互动影响。植物与地上和地下互助者联系在一起,两个突出的例子是蚂蚁和丛枝菌根真菌(AMF),分别。虽然这两种相互关系都得到了广泛的研究,联合操作测试它们对植物的独立和交互(非加性)效应很少见。为了解决这个差距,我们通过咬叶昆虫攻击马铃薯(Solanumtuberosum)植物,对蚂蚁和AMF对食草动物的影响进行了联合测试,并进一步测量了植物性状,这些性状可能介导了对草食动物的共同作用。在现场实验中,我们通过因素操纵AMF(两个水平:对照和菌根化)和蚂蚁(两个水平:排除和存在)的存在,并量化了作为直接防御的叶片酚类化合物的浓度,以及可能直接介导的植物挥发性有机化合物(VOC)排放(例如,草食动物驱避剂)或间接(例如,蚂蚁引诱剂)防御。此外,我们测量了蚂蚁的丰度,并对VOC混合物的影响进行了双重选择温室实验测试(模仿对照与接种AMF的植物)对蚂蚁的吸引力作为间接防御机制。蚂蚁的存在显着减少了食草动物,而菌根化对食草动物和相互作用没有可检测的影响。植物性状测量表明,菌根对叶片酚类物质没有影响,但显着增加了VOC的排放。然而,菌根化不会影响蚂蚁的丰度,也没有证据表明AMF会通过蚂蚁介导的防御对草食性活动产生影响。始终如一,双重选择试验表明,AMF诱导的挥发性混合物对蚂蚁吸引力没有影响。一起,这些结果表明,马铃薯植物的食草动物主要响应自上而下(蚂蚁介导的)而不是自下而上(AMF介导的)控制,效应的不对称性,这可能排除了对草食动物的互惠非加性效应。对此进一步研究,以及其他工厂系统,需要检查生态环境,在这种环境下,互惠互动效应或多或少可能出现,以及它们对植物适应性和相关社区的影响。
    CONCLUSIONS: Ants, but not mycorrhizae, significantly affected insect leaf-chewing herbivory on potato plants. However, there was no evidence of mutualistic interactive effects on herbivory. Plants associate with both aboveground and belowground mutualists, two prominent examples being ants and arbuscular mycorrhizal fungi (AMF), respectively. While both of these mutualisms have been extensively studied, joint manipulations testing their independent and interactive (non-additive) effects on plants are rare. To address this gap, we conducted a joint test of ant and AMF effects on herbivory by leaf-chewing insects attacking potato (Solanum tuberosum) plants, and further measured plant traits likely mediating mutualist effects on herbivory. In a field experiment, we factorially manipulated the presence of AMF (two levels: control and mycorrhization) and ants (two levels: exclusion and presence) and quantified the concentration of leaf phenolic compounds acting as direct defenses, as well as plant volatile organic compound (VOC) emissions potentially mediating direct (e.g., herbivore repellents) or indirect (e.g., ant attractants) defense. Moreover, we measured ant abundance and performed a dual-choice greenhouse experiment testing for effects of VOC blends (mimicking those emitted by control vs. AMF-inoculated plants) on ant attraction as a mechanism for indirect defense. Ant presence significantly reduced herbivory whereas mycorrhization had no detectable influence on herbivory and mutualist effects operated independently. Plant trait measurements indicated that mycorrhization had no effect on leaf phenolics but significantly increased VOC emissions. However, mycorrhization did not affect ant abundance and there was no evidence of AMF effects on herbivory operating via ant-mediated defense. Consistently, the dual-choice assay showed no effect of AMF-induced volatile blends on ant attraction. Together, these results suggest that herbivory on potato plants responds mainly to top-down (ant-mediated) rather than bottom-up (AMF-mediated) control, an asymmetry in effects which could have precluded mutualist non-additive effects on herbivory. Further research on this, as well as other plant systems, is needed to examine the ecological contexts under which mutualist interactive effects are more or less likely to emerge and their impacts on plant fitness and associated communities.
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  • 文章类型: Journal Article
    跟随蚂蚁的行为是新热带和非洲热带雨林鸟类的普遍现象,但在中非却鲜为人知。我们在这里报道喀麦隆低地雨林的现象,量化不同蚂蚁跟随鸟类物种与驱动蚂蚁相互作用的强度,并检验以下假设:蚂蚁跟随行为的专业化水平较高与优势或侵略依赖性羽毛和其他形态特征有关。羊群大小在1至11个个体之间变化,同时出现的平均大小为5.34±2.68(平均值±SD)。在一次突袭中观察到的最大物种数量是十个,而最小数量为4个,总体物种丰富度为6.89±2.1个。21种参与的鸟类在蚂蚁跟随行为的程度上差异很大。在种间比较中,羽毛特征,如彩色冠的存在,眼点,眼睛周围裸露的皮肤,结合meta骨的长度和重量,与蚂蚁跟随行为显著相关。这些结果表明,中非物种蚂蚁跟随鸟类组合的大小和身份与东非报道的相似。他们还建议,蚂蚁跟随有利于选择特征,这些特征标志着在林下为争夺有价值的食物资源而挣扎的个体之间的相互作用中占主导地位。
    Ant-following behavior is a common phenomenon in birds of Neotropical and Afrotropical rainforests but yet little is known from Central Africa. We here report on the phenomenon in lowland rainforest in Cameroon, quantifying the strength of the interaction of different ant-following bird species with driver ants and test the hypothesis that higher levels of specialization in ant-following behavior are associated with dominance or aggression-dependent plumage and other morphological traits. Flock size varied between 1 and 11 individuals with a mean size of 5.34 ± 2.68 (mean ± SD) individuals occurring at the same time. The maximum number of species present during one raid observed was ten, whereas the minimum number was four with an overall species richness of 6.89 ± 2.1 species. The 21 attending bird species strongly varied in the degree of ant-following behavior. In an interspecific comparison, plumage traits such as the presence of a colored crown, eyespots, and bare skin around the eye, in combination with metatarsus length and weight, were significantly correlated with ant-following behavior. These results suggest that-in size and identity of species-ant-following bird assemblages in Central Africa are similar to those reported from East Africa. They also suggest that ant following favors the selection of traits that signal dominance in interactions between individuals struggling for valuable food resources in the forest understory.
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  • 文章类型: Journal Article
    社会性昆虫的生态成功使其殖民地组织对研究集体系统的科学家着迷。近年来,自动行为跟踪和社会网络分析的结合加深了我们对群体组织许多方面的理解。然而,因为研究通常针对单一物种,我们对网络结构的种间变化知之甚少。这里,我们对来自五个亚科的五个蚂蚁进行了比较网络分析,由超过100个Myr的进化分开。我们发现,社会网络结构在各个子家庭中高度保守。所有研究的物种都形成模块化网络,有两个社会社区,两个社区之间的个体分布相似,以及将任务绩效等效地映射到社区。在这种组织相似性的背景下,不同物种的皇后在质量上占据了不同的网络位置。这两个群落结构的深度保护意味着,社会昆虫中最基本的行为分工是在停留在巢中的工人之间进行的。和那些离开巢穴觅食的人。在双亲照顾系统中,这种划分在整个动物界中具有相似之处,并且可能代表了最容易发展的行为分工形式。
    The ecological success of social insects makes their colony organization fascinating to scientists studying collective systems. In recent years, the combination of automated behavioural tracking and social network analysis has deepened our understanding of many aspects of colony organization. However, because studies have typically worked with single species, we know little about interspecific variation in network structure. Here, we conduct a comparative network analysis across five ant species from five subfamilies, separated by more than 100 Myr of evolution. We find that social network structure is highly conserved across subfamilies. All species studied form modular networks, with two social communities, a similar distribution of individuals between the two communities, and equivalent mapping of task performance onto the communities. Against this backdrop of organizational similarity, queens of the different species occupied qualitatively distinct network positions. The deep conservation of the two community structure implies that the most fundamental behavioural division of labour in social insects is between workers that stay in the nest to rear brood, and those that leave the nest to forage. This division has parallels across the animal kingdom in systems of biparental care and probably represents the most readily evolvable form of behavioural division of labour.
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  • 文章类型: Journal Article
    明显的寄生虫的健身效果,主机对他们的抵抗,有很好的记录。大多数共生体,然而,更隐蔽,他们与宿主的互动不太容易理解。Wolbachia,昆虫的细胞内共生体,特别有趣,因为它被认为不受宿主免疫反应的影响,并且具有主要集中在性别比操纵上的健身效果。这里,我们使用定量PCR来研究宿主基因型是否影响切叶蚂蚁Acromyrmexechinatior的Wolbachia感染密度,以及Wolbachia感染密度是否可能影响宿主形态或种姓确定。我们发现宿主菌落之间的Wolbachia感染密度存在显着差异,宿主父系之间的感染密度差异也较小。然而,Wolbachia感染的密度似乎不会影响成年皇后的形态或蚂蚁发展为皇后的可能性。结果表明,宿主基因型和环境都会影响宿主与Wolbachia的关系,但是Wolbachia感染对该系统中幼虫的发育几乎没有生理作用。
    The fitness effects of overt parasites, and host resistance to them, are well documented. Most symbionts, however, are more covert and their interactions with their hosts are less well understood. Wolbachia, an intracellular symbiont of insects, is particularly interesting because it is thought to be unaffected by the host immune response and to have fitness effects mostly focussed on sex ratio manipulation. Here, we use quantitative PCR to investigate whether host genotype affects Wolbachia infection density in the leaf-cutting ant Acromyrmex echinatior, and whether Wolbachia infection density may affect host morphology or caste determination. We found significant differences between host colonies in the density of Wolbachia infections, and also smaller intracolonial differences in infection density between host patrilines. However, the density of Wolbachia infections did not appear to affect the morphology of adult queens or likelihood of ants developing as queens. The results suggest that both host genotype and environment influence the host-Wolbachia relationship, but that Wolbachia infections carry little or no physiological effect on the development of larvae in this system.
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  • 文章类型: Journal Article
    根据孟德尔第二定律,染色体在减数分裂中随机分离。非随机隔离主要用于女性的自私减数分裂驱动的情况,其中特定的等位基因偏向它们自己传递到卵母细胞中。在这里,我们报告了一个罕见的无私减数分裂驱动的例子,用于克隆掠夺者蚂蚁的交叉遗传,Ooceraeabiroi,其中两个等位基因在整个基因组的所有基因座上共同遗传。该物种通过融合来自同一减数分裂的两个单倍体核,孤雌生殖地产生二倍体后代。这个过程应该导致快速的基因型退化,由于杂合性的丧失,如果交叉重组之后是染色体的随机(孟德尔)分离,则会导致交叉重组。然而,通过比较母亲和女儿的整个基因组,我们表明杂合性的丢失是非常罕见的,增加了O.biroi减数分裂中不频繁或不存在交叉的可能性。结合细胞学和全基因组测序,我们证明交叉重组是,事实上,常见,但避免了杂合性的损失,因为交叉产物是忠实地共同遗传的。这是由于对孟德尔隔离定律的编程违反,这样交叉产品就会隔离在一起,而不是随机的。这一发现凸显了细胞“记忆”交叉的极端例子,这可能是染色体分离的一个常见但隐秘的特征。
    According to Mendel\'s second law, chromosomes segregate randomly in meiosis. Non-random segregation is primarily known for cases of selfish meiotic drive in females, in which particular alleles bias their own transmission into the oocyte. Here we report a rare example of unselfish meiotic drive for crossover inheritance in the clonal raider ant, Ooceraea biroi, in which both alleles are co-inherited at all loci across the entire genome. This species produces diploid offspring parthenogenetically via fusion of two haploid nuclei from the same meiosis. This process should cause rapid genotypic degeneration due to loss of heterozygosity, which results if crossover recombination is followed by random (Mendelian) segregation of chromosomes. However, by comparing whole genomes of mothers and daughters, we show that loss of heterozygosity is exceedingly rare, raising the possibility that crossovers are infrequent or absent in O. biroi meiosis. Using a combination of cytology and whole-genome sequencing, we show that crossover recombination is, in fact, common but that loss of heterozygosity is avoided because crossover products are faithfully co-inherited. This results from a programmed violation of Mendel\'s law of segregation, such that crossover products segregate together rather than randomly. This discovery highlights an extreme example of cellular \'memory\' of crossovers, which could be a common yet cryptic feature of chromosomal segregation.
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  • 文章类型: Journal Article
    目的:在大多数陆地生态系统中,蚂蚁是生态优势昆虫,迄今为止,已有约340属的14,000多个现存物种。然而,对于大多数物种来说,基因组资源仍然稀缺,尤其是东亚或东南亚特有的物种,限制了系统发育的研究,这种进化上成功的动物谱系的物种形成和适应。这里,我们组装并注释了Odontoponeratransversa和Camponotusfriedae的基因组,两种在中国自然分布的蚂蚁,以促进未来对蚂蚁进化的研究。
    方法:我们获得了O.transversa和C.friedae的16Gb和51GbPacBioHiFi数据,分别,将其组装到O.transversa的339Mb和C.friedae的233Mb的草案基因组中。通过多个度量进行的基因组评估显示了两个组装的良好完整性和高精度。RNA-seq数据辅助的基因注释在两个基因组中产生了相当数量的蛋白质编码基因(O.transversa为10,892,C.friedae为11,296),而重复注释显示,这两种蚂蚁之间的重复含量存在显着差异(O.transversa为149.4Mb,而Friedae为49.7Mb)。此外,组装并注释了这两个物种的完整线粒体基因组。
    OBJECTIVE: Ants are ecologically dominant insects in most terrestrial ecosystems, with more than 14,000 extant species in about 340 genera recorded to date. However, genomic resources are still scarce for most species, especially for species endemic in East or Southeast Asia, limiting the study of phylogeny, speciation and adaptation of this evolutionarily successful animal lineage. Here, we assemble and annotate the genomes of Odontoponera transversa and Camponotus friedae, two ant species with a natural distribution in China, to facilitate future study of ant evolution.
    METHODS: We obtained a total of 16 Gb and 51 Gb PacBio HiFi data for O. transversa and C. friedae, respectively, which were assembled into the draft genomes of 339 Mb for O. transversa and 233 Mb for C. friedae. Genome assessments by multiple metrics showed good completeness and high accuracy of the two assemblies. Gene annotations assisted by RNA-seq data yielded a comparable number of protein-coding genes in the two genomes (10,892 for O. transversa and 11,296 for C. friedae), while repeat annotations revealed a remarkable difference of repeat content between these two ant species (149.4 Mb for O. transversa versus 49.7 Mb for C. friedae). Besides, complete mitochondrial genomes for the two species were assembled and annotated.
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