genetic screening

基因筛查
  • 文章类型: Journal Article
    植物的内膜系统由相互连接的膜细胞器组成,这些细胞器有助于细胞内的结构和功能。这些细胞器包括内质网(ER),高尔基体,液泡,跨高尔基网络,和前液泡室或多泡体。通过囊泡介导的转运,分泌的蛋白质在ER中合成,随后沿着分泌途径转运至液泡或细胞外,以实现特定功能。遗传筛选是研究植物蛋白分泌的重要方法。它需要识别基因突变导致的表型差异,如甲磺酸乙酯,T-DNA插入,RNAi,研究基因功能并发现具有特定性状或基因功能的突变体。通过遗传筛选对植物蛋白分泌的研究取得了重大进展。在这个协议中,我们提供了使用基因筛选方法研究蛋白质分泌途径的分步指南.我们使用拟南芥的游离1抑制剂和Marchantiapolymorpha的油体突变体的例子。此外,我们对基因筛选进行了概述,并简要总结了蛋白质分泌研究领域的新兴技术。
    The endomembrane system in plants is composed of interconnected membrane organelles that contribute to intracellular structure and function. These organelles include the endoplasmic reticulum (ER), Golgi apparatus, vacuole, trans-Golgi network, and prevacuolar compartment or multivesicular body. Through vesicle-mediated transport, secreted proteins are synthesized in the ER and subsequently transported along the secretory pathway to the vacuole or outside of cells to fulfill specialized functions. Genetic screening is a crucial method for studying plant protein secretion. It entails identifying phenotypic differences resulting from genetic mutations, such as ethyl methanesulfonate, T-DNA insertion, and RNAi, to investigate gene function and discover mutants with specific traits or gene functions. Significant progress has been achieved in the study of plant protein secretion through genetic screening. In this protocol, we provide a step-by-step guide to studying the protein secretion pathway using a genetic screen approach. We use the example of the free 1 suppressor of Arabidopsis thaliana and oil body mutants of Marchantia polymorpha. Additionally, we offer an overview of genetic screening and briefly summarize the emerging technologies in the field of protein secretion research.
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  • 文章类型: Journal Article
    CRISPR技术彻底改变了从基础科学到转化医学的研究领域。基于CRISPR的基因筛选为各个领域的无偏见筛选提供了强大的平台。比如癌症免疫学。免疫检查点阻断(ICB)疗法已被证明强烈影响癌症治疗。然而,目前可用的ICBs有限,并不适用于所有癌症患者.汇集的CRISPR筛选能够识别以前未知的可以调节T细胞激活的免疫调节剂。细胞毒性,持久性,浸润到肿瘤中,细胞因子分泌,记忆形成,T细胞代谢,和CD4+T细胞分化。这些新的靶标可以被开发为新的免疫疗法或与当前的ICB一起用作可以产生协同功效的新的组合疗法。这里,我们回顾了CRISPR技术发展的进展,特别是CRISPR筛选的技术进步及其在免疫疗法新靶点识别中的应用。
    CRISPR technologies have revolutionized research areas ranging from fundamental science to translational medicine. CRISPR-based genetic screens offer a powerful platform for unbiased screening in various fields, such as cancer immunology. Immune checkpoint blockade (ICB) therapy has been shown to strongly affect cancer treatment. However, the currently available ICBs are limited and do not work in all cancer patients. Pooled CRISPR screens enable the identification of previously unknown immune regulators that can regulate T-cell activation, cytotoxicity, persistence, infiltration into tumors, cytokine secretion, memory formation, T-cell metabolism, and CD4+ T-cell differentiation. These novel targets can be developed as new immunotherapies or used with the current ICBs as new combination therapies that may yield synergistic efficacy. Here, we review the progress made in the development of CRISPR technologies, particularly technological advances in CRISPR screens and their application in novel target identification for immunotherapy.
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  • 文章类型: Journal Article
    单倍体细胞是一种只有一组染色体的细胞。与传统的二倍体细胞相比,单倍体细胞在基因筛选和药物靶向治疗方面具有独特的优势,由于它们的表型等于基因型。胚胎干细胞是一种具有很强分化潜能的细胞,在体外特定条件下可以分化为各种类型的细胞。因此,单倍体胚胎干细胞同时具有单倍体细胞和胚胎干细胞的特性,这使得它们在许多方面都有显著的优势,如生殖发育机制研究,遗传筛选,和药物靶向治疗。因此,建立单倍体胚胎干细胞系具有重要意义。本文综述了单倍体胚胎干细胞的研究进展,并简要讨论了单倍体胚胎干细胞的应用。
    Haploid cells are a kind of cells with only one set of chromosomes. Compared with traditional diploid cells, haploid cells have unique advantages in gene screening and drug-targeted therapy, due to their phenotype being equal to the genotype. Embryonic stem cells are a kind of cells with strong differentiation potential that can differentiate into various types of cells under specific conditions in vitro. Therefore, haploid embryonic stem cells have the characteristics of both haploid cells and embryonic stem cells, which makes them have significant advantages in many aspects, such as reproductive developmental mechanism research, genetic screening, and drug-targeted therapy. Consequently, establishing haploid embryonic stem cell lines is of great significance. This paper reviews the progress of haploid embryonic stem cell research and briefly discusses the applications of haploid embryonic stem cells.
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  • 文章类型: Journal Article
    背景:苗勒腺肉瘤,一种罕见的恶性肿瘤,提出了诊断和治疗的挑战。在这项研究中,我们对22例腺肉瘤的临床病理特征进行了分析,特别侧重于筛选DICER1热突变。
    方法:该队列包括2020年至2022年6月在华西第二医院注册的腺肉瘤患者。Sanger测序用于筛选22个腺肉瘤中DICER1的RNaseIIIb结构域中的体细胞热点突变。
    结果:只有一名患者表现出DICER1突变,而不是DICER1热点突变。在22名患者中,所有患者均接受了全子宫切除术和双侧附件卵巢切除术,这22名患者中有14名接受了辅助治疗。
    结论:总之,我们对22例苗勒腺肉瘤的研究集中在临床病理特征和DICER1热点突变的存在。尽管我们的研究结果没有发现研究样品中的任何DICER1突变,这一阴性结果为该领域提供了有价值的信息,缩小了腺肉瘤的遗传范围,并强调需要进一步研究驱动这种恶性肿瘤的替代分子途径.
    BACKGROUND: Müllerian adenosarcoma, a rare malignancy, presents diagnostic and therapeutic challenges. In this study, we conducted an analysis of the clinicopathological characteristics of 22 adenosarcomas, with a particular focus on screening for DICER1 hot mutations.
    METHODS: The cohort consisted of patients with adenosarcoma who were registered at the West China Second Hospital between the years 2020 and June 2022. Sanger sequencing was employed to screen for somatic Hotspot mutations in the RNase IIIb domain of DICER1 in the 22 adenosarcomas.
    RESULTS: Only one patient exhibited a DICER1 mutation that was not a DICER1 Hotspot mutation. Among the 22 patients, all underwent total hysterectomy with bilateral salpingo-oophorectomy, and 14 out of these 22 patients received adjuvant treatment.
    CONCLUSIONS: In summary, our study of 22 Müllerian adenosarcomas focused on the clinicopathological features and the presence of DICER1 Hotspot mutations. Although our findings did not reveal any DICER1 mutations in the studied samples, this negative result provides valuable information for the field by narrowing down the genetic landscape of adenosarcomas and highlighting the need for further research into alternative molecular pathways driving this malignancy.
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  • 文章类型: Journal Article
    法布里病(FD),由α-半乳糖苷酶A功能障碍引起的X连锁疾病,会导致严重的并发症。早期干预会产生更好的结果,但是误诊或延误诊断很常见,影响预后。因此,早期发现对FD的临床诊断和治疗至关重要。虽然某些地区已经实施了新生儿FD筛查,酶活性检测技术仍然存在挑战,特别是女性和迟发性患者。需要进一步探索改进的筛查策略。这项研究回顾性分析了17,171名新生儿的致病性GLA变异的遗传筛查结果。结果表明,中国南京地区FD的估计发病率约为1321年1例。潜在FD患者中最常见的致病变异为c.640-801G>A(46.15%)。此外,致病变体c.911G>C的残余酶活性略高于其他变体,并表明与酶活性测试相比,基因筛查在识别潜在女性和迟发性患者方面可能更有效。这项研究为GLA基因筛查的有效性提供了初步的见解,并为早期诊断提供了参考。治疗,和FD中的遗传咨询。
    Fabry disease (FD), an X-linked disorder resulting from dysfunction of α-galactosidase A, can result in significant complications. Early intervention yields better outcomes, but misdiagnosis or delayed diagnosis is common, impacting prognosis. Thus, early detection is crucial in the clinical diagnosis and treatment of FD. While newborn screening for FD has been implemented in certain regions, challenges persist in enzyme activity detection techniques, particularly for female and late-onset patients. Further exploration of improved screening strategies is warranted. This study retrospectively analyzed genetic screening results for pathogenic GLA variants in 17,171 newborns. The results indicated an estimated incidence of FD in the Nanjing region of China of approximately 1 in 1321. The most prevalent pathogenic variant among potential FD patients was c.640-801G > A (46.15 %). Furthermore, the residual enzyme activity of the pathogenic variant c.911G > C was marginally higher than that of other variants, and suggesting that genetic screening may be more effective in identifying potential female and late-onset patients compared to enzyme activity testing. This research offers initial insights into the effectiveness of GLA genetic screening and serves as a reference for early diagnosis, treatment, and genetic counseling in FD.
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  • 文章类型: Journal Article
    UNASSIGNED: At least 60% of cases of severe hearing loss result from genetic factors. In this study genetic screening was carried out for common genetic deafness in women of childbearing age to prevent deafness and birth defects via providing genetic counseling and follow-up services for high-risk families.
    UNASSIGNED: In total 60,391 pre-pregnancy/early-gestation women who received treatment in second-level or above hospitals in Weihai from February 2017 to December 2019 were selected. Venous or peripheral blood was collected to make dried blood slices on filter paper to extract genomic DNA, and high-throughput sequencing was applied to detect 20 variant sites in 4 common deafness genes (GJB2, GJB3, SLC26A4 and mitochondrial 12S rRNA) in the Chinese population. The spouses of women with deafness gene variants were sequenced.
    UNASSIGNED: In total 3,761 carriers with deafness gene variants were detected in 60,391 women of childbearing age, with a carrier rate of 6.2%. Among them, 1,739 women (2.88%) only carried GJB2 pathogenic variants. The carrying rate of c.235delC in GJB2 pathogenic variants was the highest at 2.08%. 1,553 women (2.58%) only carried SLC26A4 pathogenic variants. The carrying rate of c.919-2A>G in SLC26A4 pathogenic variants was the highest at 1.63%. 300 women (0.5%) only carried GJB3 variants, and 125 women (0.2%) carried the mitochondrial drug-sensitive gene variant.
    UNASSIGNED: This screening model will greatly reduce the birth rate of children with hearing disabilities and is an effective way to prevent newborn deafness. In addition, genetic screening provided the related knowledge of hereditary deafness, especially strengthening genetic counseling and the clinical decision making from the genetic screening.
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  • 文章类型: Observational Study
    背景:遗传性疾病导致一半的先天性听力损失。听力筛查在检测听力损失(HL)方面具有重要意义,但在诊断时较弱。这可以通过基因筛查来补充。
    方法:为了找到一种可行的方法来完成基因筛查,并评估其与听力筛查相结合的优势,在2022年1月1日至2023年12月10日期间,我们在江苏省三家医院进行了一项基于2488例汉族新生儿的观察性队列研究.通过多色熔解曲线分析(MMCA)对四种常见HL相关基因中的20种变体进行遗传筛查,并同时对所有参与者进行听力筛查。
    结果:总计,在2488例合格新生儿中,有170例(6.8%)检测到至少一种变异,其中,转诊比例较高(p<0.05).遗传筛查与听力筛查相结合,发现听力筛查遗漏的确诊听力损失病例增加了25.0%(8个中的2个)。
    结论:这项研究表明,基因筛查与MMCA听力筛查相结合,可有效发现潜在的HL病例,并可在其他地方进行验证。
    BACKGROUND: Genetic disorders ascribe to half of cases of congenital hearing loss. Hearing screening is significant in detecting hearing loss (HL) but weak at diagnosis, which can be complemented by genetic screening.
    METHODS: To find a feasible method to accomplish genetic screening and evaluate its advantage when combined with hearing screening, between 1 January 2022, and 10 December 2023, we performed an observational cohort study based on 2488 neonates from the Han population at three hospitals in Jiangsu province. Genetic screening for 20 variants in four common HL-associated genes by multicolor melting curve analysis (MMCA) and hearing screening were offered concurrently to all participants.
    RESULTS: In total, 170 (6.8%) of 2488 eligible neonates were detected at least one variant and among them, the proportion of referral was higher (p < 0.05). Genetic screening combined with hearing screening was associated with a 25.0% increase (2 of 8) in discovering cases of diagnosed hearing loss that were missed by hearing screening.
    CONCLUSIONS: This study suggests that genetic screening combined with hearing screening by MMCA is effective at finding potential HL cases and practical to be validated in other places.
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  • 文章类型: Journal Article
    这项研究的目的是全面调查中国新生儿人群中与听力损失(HL)相关的三种常见遗传变异的患病率和分布模式。方法:在2023年6月30日之前,在多个文献数据库中进行了广泛的搜索和筛选过程。利用R软件进行荟萃分析,制图,和相关分析。结果:第一,我们的研究共确认了99项符合纳入标准的研究.值得注意的是,青海等省,西藏,吉林,黑龙江缺乏大规模的新生儿耳聋基因筛查数据。其次,在中国新生儿中,GJB2变体的载波频率(c.235delC,c.299_300delAT)分别为1.63%(95CI1.52%-1.76%)和0.33%(95CI0.30%-0.37%);而SLC26A4变体(c.919-2A>G,c.2168A>G)表现出的载体率为0.95%(95CI0.86%-1.04%)和0.17%(95CI0.15%-0.19%);此外,发现Mt12SrRNAm.1555A>G变体的比率为0.24%(95%CI0.22%-0.26%)。第三,黑河-腾冲系东部的GJB2c.235delC突变率较高,而Mt12SrRNAm.1555A>G变体的突变率表现出相反的模式。第四,没有显著的相关性表现出GJB2变体的相反模式,但SLC26A4变体之间存在显著相关性。最后,来自不同基因的突变位点之间存在很强的区域分布相关性,特别是在SLC26A4(c.919-2A>G和c.2168A>G)和GJBc.299_300delAT之间。结论:中国新生儿中最常见的耳聋基因是GJB2c.235delC变异,其次是SLC26A4c.919-2A>G变体。这些基因突变率表现出显著的区域分布特征。因此,必须加强基因筛查工作,以减少高风险地区的耳聋发生率。
    The aim of this study is to comprehensively investigate the prevalence and distribution patterns of three common genetic variants associated with hearing loss (HL) in Chinese neonatal population. Methods: Prior to June 30, 2023, an extensive search and screening process was conducted across multiple literature databases. R software was utilized for conducting meta-analyses, cartography, and correlation analyses. Results: Firstly, our study identified a total of 99 studies meeting the inclusion criteria. Notably, provinces such as Qinghai, Tibet, Jilin, and Heilongjiang lack large-scale genetic screening data for neonatal deafness. Secondly, in Chinese newborns, the carrier frequencies of GJB2 variants (c.235delC, c.299_300delAT) were 1.63 % (95 %CI 1.52 %-1.76 %) and 0.33 % (95 %CI 0.30 %-0.37 %); While SLC26A4 variants (c.919-2A > G, c.2168A > G) exhibited carrier rates of 0.95 % (95 %CI 0.86 %-1.04 %) and 0.17 % (95 %CI 0.15 %-0.19 %); Additionally, Mt 12S rRNA m.1555 A > G variant was found at a rate of 0.24 % (95 % CI 0.22 %-0.26 %). Thirdly, the mutation rate of GJB2 c.235delC was higher in the east of the Heihe-Tengchong line, whereas the mutation rate of Mt 12S rRNA m.1555 A > G variant exhibited the opposite pattern. Forthly, no significant correlation exhibited the opposite pattern of GJB2 variants, but there was a notable correlation among SLC26A4 variants. Lastly, strong regional distribution correlations were evident between mutation sites from different genes, particularly between SLC26A4 (c.919-2A > G and c.2168A > G) and GJB c.299_300delAT. Conclusions: The most prevalent deafness genes among Chinese neonates were GJB2 c.235delC variant, followed by SLC26A4 c.919-2A > G variant. These gene mutation rates exhibit significant regional distribution characteristics. Consequently, it is imperative to enhance genetic screening efforts to reduce the incidence of deafness in high-risk areas.
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  • 文章类型: Case Reports
    作者描述了一名16岁男性的案例,该男性在6个月前由于视力模糊而被偶然发现血压为200/?mmHg,并被诊断为“高血压3级,肾功能不全的高风险,高血压脑病,高血压性心脏病,进行相关检查后,眼底出血。开始降压治疗后,他的血压波动约为120/90mmHg。虽然他高血压的诊断工作尚无定论,他在体格检查中患有严重的高血压,短指E型和身材矮小。患者在严格控制血压后,心脏损害和肾功能不全最终恢复正常,提示高血压和短指综合征本身不会引起心脏和肾脏损害。
    The authors describe the case of a 16-year-old male who was incidentally found to have a blood pressure of 200/? mmHg 6 months previously due to blurred vision and was diagnosed with \"high risk of hypertension grade 3, renal insufficiency, hypertensive encephalopathy, hypertensive heart disease, and fundus hemorrhage\" after relevant examinations were performed. His blood pressure fluctuated around 120/90 mmHg after beginning antihypertensive treatment. While the diagnostic work-up of his hypertension was inconclusive, he had severe hypertension with brachydactyly type E and short stature on physical examination. The patient\'s cardiac damage and renal insufficiency ultimately returned to normal after strict blood pressure control, suggesting that hypertension and brachydactyly syndrome alone do not cause cardiac and renal damage.
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  • 文章类型: Journal Article
    背景:分析新生儿听力损失基因的基因型分布和频率,并评估中国基因筛查政策的临床价值。
    方法:在2019年3月至2021年12月期间,对84,029名新生儿进行了听力损失遗传筛查,其中77,647名新生儿接受了筛查计划,并进行了一年的随访。在微阵列平台上对GJB2、GJB3、SLC26A4和MT-RNR1中的15个热点变体进行基因分型。
    结果:总共3.05%(2369/77,647)的新生儿携带至少一种遗传性听力损失相关变异,用于早期预防管理。GJB2基因的携带频率最高,1.48%(1147/77,647),其次是SLC26A4基因,占1.07%(831/77,647),和GJB3基因在0.23%(181/77,647)。GJB2c.235delC变体和SLC26A4IVS7-2A>G变体是最常见的等位基因变体,等位基因频率为0.6304%(979/155,294)和0.3992%(620/155,294)。分别。10名儿童被鉴定为致病性变异的纯合或复合杂合(GJB2中有4名,SLC26A4中有6名),其中7名婴儿通过了听力筛查。对经过基因筛查的新生儿进行随访后发现,与单独进行听力筛查相比,遗传筛查检测到的听力受损婴儿更多。基因筛查有助于识别通过初步听力筛查的婴儿,减少助听器的诊断和干预时间。此外,我们确定了234名新生儿(0.30%,234/77,647)易受可预防的氨基糖苷类抗生素耳毒性的影响,听力筛查无法检测到。
    结论:我们在中国东南部进行了最大规模的新生儿听力损失基因携带者筛查。我们的结果表明,遗传筛查是传统听力筛查的重要补充。我们的实践和经验可以促进中国大陆新生儿遗传筛查政策的应用和发展。
    BACKGROUND: To analyze the genotype distribution and frequency of hearing loss genes in newborn population and evaluate the clinical value of genetic screening policy in China.
    METHODS: Genetic screening for hearing loss was offered to 84,029 neonates between March 2019 and December 2021, of whom 77,647 newborns accepted the screening program with one-year follow-up. The genotyping of 15 hot spot variants in GJB2, GJB3, SLC26A4, and MT-RNR1 was performed on microarray platform.
    RESULTS: A total of 3.05% (2369/77,647) newborns carried at least one genetic hearing loss-associated variant, indicated for early preventive management. The carrier frequency of GJB2 gene was the highest, at 1.48% (1147/77,647), followed by SLC26A4 gene at 1.07% (831/77,647), and GJB3 gene at 0.23% (181/77,647). GJB2 c.235delC variant and SLC26A4 IVS7-2A>G variant were the most common allelic variants with allele frequency of 0.6304% (979/155,294) and 0.3992% (620/155,294), respectively. 10 children are identified as homozygous or compound heterozygous for pathogenic variants (4 in GJB2, 6 in SLC26A4), and 7 of these infants had passed the hearing screening. Following up of the genetically screened newborns revealed that genetic screening detected more hearing-impaired infants than hearing screening alone. Genetic screening helped identify the infants who had passed the initial hearing screening, and reduced time for diagnosis and intervention of hearing aid. In addition, we identified 234 newborns (0.30%, 234/77,647) susceptible to preventable aminoglycoside antibiotic ototoxicity undetectable by hearing screening.
    CONCLUSIONS: We performed the largest-scale neonatal carrier screening for hearing loss genes in Southeast China. Our results indicated that genetic screening is an important complementation to conventional hearing screening. Our practice and experience may facilitate the application and development of neonatal genetic screening policy in mainland China.
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