clock genes

时钟基因
  • 文章类型: Journal Article
    背景:糖尿病肾病(DKD)是一种与昼夜节律和生物钟调节障碍相关的复杂疾病。褪黑素(MT)被认为是一种具有肾脏保护作用的激素,但其在DKD中的作用机制尚不清楚。
    方法:我们使用来自GEO数据库的GSE151325数据集进行差异基因分析,并通过GO和KEGG分析以及PPI网络分析进一步探索相关基因和途径。此外,本研究采用2型糖尿病db/db小鼠模型,通过免疫组织化学研究褪黑素在DKD中的作用及其与时钟基因的关系,蛋白质印迹,实时PCR,ELISA,染色质免疫沉淀(ChIP),双荧光素酶报告技术,和脂质体转染技术研究DEC1siRNA。
    结果:生物信息学分析揭示了时钟基因如CLOCK的中心位置,DKD中的DEC1、Bhlhe41、CRY1和RORB。它们与关键炎症调节因子的相互作用可能揭示褪黑素治疗糖尿病肾病的潜在机制。进一步的实验结果表明,褪黑素明显改善db/db小鼠的肾脏病理变化,降低体重和血糖,在肾组织中调节时钟基因,并下调TLR2/MyD88/NF-κB信号通路。我们发现转录因子DEC1可以与TLR2启动子结合并激活其转录,而CLOCK的效果尚不清楚。脂质体转染实验进一步证实了DEC1对TLR2/MyD88/NF-κB信号通路的影响。
    结论:褪黑素通过调控时钟基因和下调TLR2/MyD88/NF-κB信号通路,显示出显著的肾脏保护作用。转录因子DEC1可能通过激活TLR2启动子转录成为肾脏炎症和纤维化的关键调控因子。这些发现为褪黑素在DKD治疗中的潜在应用提供了新的视角和方向。
    BACKGROUND: Diabetic Kidney Disease (DKD) is a complex disease associated with circadian rhythm and biological clock regulation disorders. Melatonin (MT) is considered a hormone with renal protective effects, but its mechanism of action in DKD is unclear.
    METHODS: We used the GSE151325 dataset from the GEO database for differential gene analysis and further explored related genes and pathways through GO and KEGG analysis and PPI network analysis. Additionally, this study used a type 2 diabetes db/db mouse model and investigated the role of melatonin in DKD and its relationship with clock genes through immunohistochemistry, Western blot, real-time PCR, ELISA, chromatin immunoprecipitation (ChIP), dual-luciferase reporter technology, and liposome transfection technology to study DEC1 siRNA.
    RESULTS: Bioinformatics analysis revealed the central position of clock genes such as CLOCK, DEC1, Bhlhe41, CRY1, and RORB in DKD. Their interaction with key inflammatory regulators may reveal melatonin\'s potential mechanism in treating diabetic kidney disease. Further experimental results showed that melatonin significantly improved the renal pathological changes in db/db mice, reduced body weight and blood sugar, regulated clock genes in renal tissue, and downregulated the TLR2/MyD88/NF-κB signaling pathway. We found that the transcription factor DEC1 can bind to the TLR2 promoter and activate its transcription, while CLOCK\'s effect is unclear. Liposome transfection experiments further confirmed the effect of DEC1 on the TLR2/MyD88/NF-κB signaling pathway.
    CONCLUSIONS: Melatonin shows significant renal protective effects by regulating clock genes and downregulating the TLR2/MyD88/NF-κB signaling pathway. The transcription factor DEC1 may become a key regulatory factor for renal inflammation and fibrosis by activating TLR2 promoter transcription. These findings provide new perspectives and directions for the potential application of melatonin in DKD treatment.
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  • 文章类型: Journal Article
    由于地球的自转,自然环境表现出接近24小时的明暗昼夜周期。为了适应这种能量摄入模式,生物体在很长一段时间内形成了24小时有节奏的昼夜循环,被称为昼夜节律,或生物钟。随着生物钟研究的逐步推进,越来越明显的是,昼夜节律的中断与2型糖尿病(T2D)的发生密切相关。为了进一步了解T2D和生物钟的研究进展,本文综述了生物钟与糖代谢的相关性,并分析了其潜在的作用机制。基于此,我们讨论了导致昼夜节律紊乱的潜在因素及其对发展为T2D的风险的影响,旨在为今后T2D的防治探索新的可能的干预措施。在明暗的昼夜节律下,为了适应这种变化,人体形成一个涉及多种基因的内部生物钟,蛋白质和其他分子。主要机制是以CLOCK/BMAL1异源二聚体为中心的转录-翻译反馈环。构成此环的重要生物钟基因的表达可以调节T2DM相关血糖性状如葡萄糖摄取,脂肪代谢,各种外周组织和器官的胰岛素分泌/胰高血糖素分泌和敏感性。此外,睡眠,光,昼夜节律下的饮食因素也影响着T2DM的发生。
    Due to the Earth\'s rotation, the natural environment exhibits a light-dark diurnal cycle close to 24 hours. To adapt to this energy intake pattern, organisms have developed a 24-hour rhythmic diurnal cycle over long periods, known as the circadian rhythm, or biological clock. With the gradual advancement of research on the biological clock, it has become increasingly evident that disruptions in the circadian rhythm are closely associated with the occurrence of type 2 diabetes (T2D). To further understand the progress of research on T2D and the biological clock, this paper reviews the correlation between the biological clock and glucose metabolism and analyzes its potential mechanisms. Based on this, we discuss the potential factors contributing to circadian rhythm disruption and their impact on the risk of developing T2D, aiming to explore new possible intervention measures for the prevention and treatment of T2D in the future. Under the light-dark circadian rhythm, in order to adapt to this change, the human body forms an internal biological clock involving a variety of genes, proteins and other molecules. The main mechanism is the transcription-translation feedback loop centered on the CLOCK/BMAL1 heterodimer. The expression of important circadian clock genes that constitute this loop can regulate T2DM-related blood glucose traits such as glucose uptake, fat metabolism, insulin secretion/glucagon secretion and sensitivity in various peripheral tissues and organs. In addition, sleep, light, and dietary factors under circadian rhythms also affect the occurrence of T2DM.
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  • 文章类型: Journal Article
    昼夜节律生物学与不同的科学领域相交,错综复杂地编织成有机体的生理和行为的织物。昼夜节律时钟对生命的节奏编排是跨学科研究人员的重点。这项回顾性研究探讨了几个科学里程碑,这些里程碑从根本上塑造了我们对昼夜节律的当代理解。从在细胞水平上破译时钟基因的复杂性到探索整个生物体对刺激的反应中耦合振荡器的细微差别。该领域最近在遗传学方法的指导下经历了重大的演变。我们在这里的探索考虑了昼夜节律研究领域的关键时刻,用敏锐的眼光来阐明这门学科的发展轨迹和范式的转变。
    Circadian Biology intersects with diverse scientific domains, intricately woven into the fabric of organismal physiology and behavior. The rhythmic orchestration of life by the circadian clock serves as a focal point for researchers across disciplines. This retrospective examination delves into several of the scientific milestones that have fundamentally shaped our contemporary understanding of circadian rhythms. From deciphering the complexities of clock genes at a cellular level to exploring the nuances of coupled oscillators in whole organism responses to stimuli. The field has undergone significant evolution lately guided by genetics approaches. Our exploration here considers key moments in the circadian-research landscape, elucidating the trajectory of this discipline with a keen eye on scientific advancements and paradigm shifts.
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  • 文章类型: Journal Article
    背景:抑郁症的定义是持续的情绪低落和睡眠模式的中断,世卫组织预测,到2030年,重度抑郁症将成为全球疾病负担的第三大主要贡献者。睡眠不足是一种应激源,会引发中枢神经系统内的炎症,一个被称为神经炎症的过程。这种炎症反应通过上调导致焦虑等症状的炎症介质的表达,在抑郁症的发展中起着至关重要的作用。绝望,失去快乐。
    方法:在本研究中,睡眠剥夺被用作诱导小鼠焦虑和抑郁样行为的方法。然后使用EZM评估小鼠的行为变化,EPM,TST,FST,和SPT。H&E染色和Nissl染色用于检测内侧前额叶皮质(mPFC)区域的形态学变化。Elisa评估血清CORT水平。检测时钟基因的mRNA水平和蛋白质表达,高迁移率基因组盒-1(Hmgb1),静默消息调节器6(Sirt6),和促炎因子通过RT-qPCR,西方印迹,和免疫荧光技术。
    结果:睡眠不足导致对陌生领域的探索减少,在绝望中度过的时间增加,降低小鼠蔗糖水的摄入量。此外,睡眠剥夺导致血清CORT分泌增加和时钟基因上调,IL6,IL1β,TNFα,Cox-2iNOS,Sirt6和Hmgb1。睡觉
    结论:睡眠剥夺会导致大脑中的焦虑-抑郁样行为和神经炎症。时钟基因的转录和Sirt6/Hmgb1途径的激活可能有助于mPFC中的炎症反应。
    BACKGROUND: Depression is defined by a persistent low mood and disruptions in sleep patterns, with the WHO forecasting that major depression will rank as the third most prevalent contributor to the global burden of disease by the year 2030. Sleep deprivation serves as a stressor that triggers inflammation within the central nervous system, a process known as neuroinflammation. This inflammatory response plays a crucial role in the development of depression by upregulating the expression of inflammatory mediators that contribute to symptoms such as anxiety, hopelessness, and loss of pleasure.
    METHODS: In this study, sleep deprivation was utilized as a method to induce anxiety and depressive-like behaviors in mice. The behavioral changes in the mice were then evaluated using the EZM, EPM, TST, FST, and SPT. H&E staining and Nissl staining was used to detect morphological changes in the medial prefrontal cortical (mPFC) regions. Elisa to assess serum CORT levels. Detection of mRNA levels and protein expression of clock genes, high mobility genome box-1 (Hmgb1), silent message regulator 6 (Sirt6), and pro-inflammatory factors by RT-qPCR, Western blotting, and immunofluorescence techniques.
    RESULTS: Sleep deprivation resulted in decreased exploration of unfamiliar territory, increased time spent in a state of despair, and lower sucrose water intake in mice. Additionally, sleep deprivation led to increased secretion of serum CORT and upregulation of clock genes, IL6, IL1β, TNFα, Cox-2, iNOS, Sirt6, and Hmgb1. Sleep.
    CONCLUSIONS: Sleep deprivation induces anxiety-depressive-like behaviors and neuroinflammation in the brain. Transcription of clock genes and activation of the Sirt6/Hmgb1 pathway may contribute to inflammatory responses in the mPFC.
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  • 文章类型: Journal Article
    代谢活跃组织中的昼夜节律对于维持身体健康至关重要。昼夜节律紊乱(CD)会导致各种健康问题,如代谢异常和免疫和认知功能障碍。然而,关于CD在免疫细胞发育和分化中的作用的研究,以及核心时钟基因的节律表达及其在CD下的表达改变,仍然不清楚。因此,我们将C57bl/6j小鼠暴露于反复逆转的明暗循环中90天,以研究CD对骨髓(BM)造血功能的影响。我们还研究了CD对内源性昼夜节律的影响,外周血和髓样白细胞的时间依赖性表达,BM内的环境稳态,和造血外在线索的昼夜节律振荡。我们的结果证实,当小鼠周围的明暗循环经常逆转时,两个主要昼夜节律标记的昼夜节律表达,下丘脑时钟基因,和血清褪黑激素,被打扰了,表明身体处于内源性CD状态。此外,CD改变了外周血和BM白细胞的时间依赖性表达,并破坏了BM内的环境稳态以及造血外在信号的昼夜节律振荡,这可能会对小鼠的BM造血产生负面影响。总的来说,这些结果表明昼夜节律对于维持健康至关重要,并提示CD与造血功能障碍之间的关联值得进一步研究.
    Circadian rhythms in metabolically active tissues are crucial for maintaining physical health. Circadian disturbance (CD) can cause various health issues, such as metabolic abnormalities and immune and cognitive dysfunctions. However, studies on the role of CD in immune cell development and differentiation, as well as the rhythmic expression of the core clock genes and their altered expression under CD, remain unclear. Therefore, we exposed C57bl/6j mice to repeated reversed light-dark cycles for 90 days to research the effects of CD on bone marrow (BM) hematopoietic function. We also researched the effects of CD on endogenous circadian rhythms, temporally dependent expression in peripheral blood and myeloid leukocytes, environmental homeostasis within BM, and circadian oscillations of hematopoietic-extrinsic cues. Our results confirmed that when the light and dark cycles around mice were frequently reversed, the circadian rhythmic expression of the two main circadian rhythm markers, the hypothalamic clock gene, and serum melatonin, was disturbed, indicating that the body was in a state of endogenous CD. Furthermore, CD altered the temporally dependent expression of peripheral blood and BM leukocytes and destroyed environmental homeostasis within the BM as well as circadian oscillations of hematopoietic-extrinsic cues, which may negatively affect BM hematopoiesis in mice. Collectively, these results demonstrate that circadian rhythms are vital for maintaining health and suggest that the association between CD and hematopoietic dysfunction warrants further investigation.
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  • 文章类型: Journal Article
    生物钟已经进化,使生物体能够对日常环境变化做出反应。在各种扰动和压力下保持强大的昼夜节律对于生物体的适应性至关重要。在真核生物(从真菌到哺乳动物)中保守的核心昼夜节律振荡器中,基于转录和翻译的负反馈循环驱动昼夜节律。生物钟基因的表达取决于转录激活因子在启动子处的结合和时钟基因的染色质状态。染色质的表观遗传修饰对昼夜节律基因的转录调控至关重要。在这里,我们回顾了当前有关昼夜节律机制的表观遗传调控的知识,并讨论了环境线索如何通过影响染色质状态来控制时钟基因表达。
    Circadian clocks have evolved to enable organisms to respond to daily environmental changes. Maintaining a robust circadian rhythm under various perturbations and stresses is essential for the fitness of an organism. In the core circadian oscillator conserved in eukaryotes (from fungi to mammals), a negative feedback loop based on both transcription and translation drives circadian rhythms. The expression of circadian clock genes depends both on the binding of transcription activators at the promoter and on the chromatin state of the clock genes, and epigenetic modifications of chromatin are crucial for transcriptional regulation of circadian clock genes. Herein we review current knowledge of epigenetic regulation of circadian clock mechanisms and discuss how environmental cues can control clock gene expression by affecting chromatin states.
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  • 文章类型: Journal Article
    目的:昼夜节律紊乱与衰老过程及相关神经退行性疾病呈正相关,这也与脑铁积累有关。然而,脑铁在调节生物节律中的作用知之甚少。在这项研究中,我们研究了脑铁水平对脑铁水平改变的小鼠自发运动活动的影响,并进一步探索了体外控制这些作用的潜在机制。
    结果:我们的结果表明,脑微血管内皮细胞中铁转运蛋白1(Fpn1)的条件性敲除导致脑铁缺乏,随后导致运动活动增强和时钟基因表达增加,包括昼夜节律运动输出周期kaput蛋白(Clock)和脑和肌肉ARNT样1(Bmal1)。同时,周期昼夜节律调节器1(PER1)的水平,它在调节生物节律中作为转录抑制因子,减少了。相反,APP/PS1小鼠脑铁水平升高抑制自主节律活动。此外,我们的研究结果表明,与Fpn1flox/flox组相比,Fpn1cdh5-CKO小鼠的血清褪黑素水平显着降低。相比之下,具有脑铁沉积的APP/PS1小鼠表现出比WT组更高的血清褪黑素水平。此外,在人类神经胶质瘤细胞系中,在U251中,我们观察到在通过去铁胺(DFO;铁螯合剂)或FPN1的内源性过表达限制铁时PER1表达降低。当U251细胞通过补充柠檬酸铁铵(FAC)或通过转铁蛋白受体1(TfR1)过表达增加铁输入时,PER1蛋白水平升高。此外,我们在小鼠小脑星形胶质细胞(MA-c)中获得了与U251细胞相似的结果,我们在不同时间点收集细胞,以研究核心时钟基因的节律表达以及DFO或FAC处理对PER1蛋白水平的影响。
    结论:这些发现共同表明,铁水平的改变通过调节PER1表达从而调节分子生物钟来影响昼夜节律。总之,我们的研究确定脑铁水平的调节是治疗年龄相关昼夜节律紊乱的潜在新靶点.
    Disturbances in the circadian rhythm are positively correlated with the processes of aging and related neurodegenerative diseases, which are also associated with brain iron accumulation. However, the role of brain iron in regulating the biological rhythm is poorly understood. In this study, we investigated the impact of brain iron levels on the spontaneous locomotor activity of mice with altered brain iron levels and further explored the potential mechanisms governing these effects in vitro.
    Our results revealed that conditional knockout of ferroportin 1 (Fpn1) in cerebral microvascular endothelial cells led to brain iron deficiency, subsequently resulting in enhanced locomotor activity and increased expression of clock genes, including the circadian locomotor output cycles kaput protein (Clock) and brain and muscle ARNT-like 1 (Bmal1). Concomitantly, the levels of period circadian regulator 1 (PER1), which functions as a transcriptional repressor in regulating biological rhythm, were decreased. Conversely, the elevated brain iron levels in APP/PS1 mice inhibited autonomous rhythmic activity. Additionally, our findings demonstrate a significant decrease in serum melatonin levels in Fpn1cdh5 -CKO mice compared with the Fpn1flox/flox group. In contrast, APP/PS1 mice with brain iron deposition exhibited higher serum melatonin levels than the WT group. Furthermore, in the human glioma cell line, U251, we observed reduced PER1 expression upon iron limitation by deferoxamine (DFO; iron chelator) or endogenous overexpression of FPN1. When U251 cells were made iron-replete by supplementation with ferric ammonium citrate (FAC) or increased iron import through transferrin receptor 1 (TfR1) overexpression, PER1 protein levels were increased. Additionally, we obtained similar results to U251 cells in mouse cerebellar astrocytes (MA-c), where we collected cells at different time points to investigate the rhythmic expression of core clock genes and the impact of DFO or FAC treatment on PER1 protein levels.
    These findings collectively suggest that altered iron levels influence the circadian rhythm by regulating PER1 expression and thereby modulating the molecular circadian clock. In conclusion, our study identifies the regulation of brain iron levels as a potential new target for treating age-related disruptions in the circadian rhythm.
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  • 文章类型: Journal Article
    昼夜节律参与调节身体的许多方面,包括细胞功能,身体活动和疾病。昼夜节律紊乱通常早于神经退行性疾病的典型症状,并且不仅是非运动症状,也是它们发生和进展的原因之一。神经胶质细胞具有调节其功能以维持大脑发育和稳态的生物钟。新的证据表明,小胶质细胞生物钟参与许多生理过程的调节,如细胞因子释放,吞噬作用,营养和代谢支持,小胶质细胞时钟的中断可能会影响帕金森病的多个方面,尤其是神经炎症和α-突触核蛋白过程。在这里,我们回顾了在健康和疾病中对小胶质细胞功能的昼夜节律控制的最新进展,并讨论神经退行性疾病小胶质时钟的新药物干预措施。
    Circadian rhythms are involved in the regulation of many aspects of the body, including cell function, physical activity and disease. Circadian disturbance often predates the typical symptoms of neurodegenerative diseases and is not only a non-motor symptom, but also one of the causes of their occurrence and progression. Glial cells possess circadian clocks that regulate their function to maintain brain development and homeostasis. Emerging evidence suggests that the microglial circadian clock is involved in the regulation of many physiological processes, such as cytokine release, phagocytosis, and nutritional and metabolic support, and that disruption of the microglia clock may affect multiple aspects of Parkinson\'s disease, especially neuroinflammation and α-synuclein processes. Herein, we review recent advances in the circadian control of microglia function in health and disease, and discuss novel pharmacological interventions for microglial clocks in neurodegenerative disorders.
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  • 文章类型: Journal Article
    本研究旨在探讨生物钟基因在小鼠牙槽骨中的表达,以及这些变化的可能原因。50只C57小鼠口服接种牙龈卟啉单胞菌,以健康小鼠为对照,建立牙周炎模型。取两组牙槽骨进行显微CT扫描,测量附着丧失量,实时荧光定量聚合酶链反应(qRT-PCR)检测各时钟基因mRNA相对表达量及牙周炎相关炎症因子。小鼠模型建立后,牙周炎组牙槽骨高度明显低于正常组(p<0.05)。Bmal1,Per2和Cry1mRNA的相对转录水平在正常组中处于昼夜节律(p≤0.05),而在牙周炎组中,其昼夜节律消失,转录水平特征发生改变。白细胞介素(IL)-6,肿瘤坏死因子-α(TNF-α),与正常组相比,牙周炎组干扰素(IFN-γ)mRNA转录水平升高。总之,正常小鼠牙槽骨中Bmal1、Per2和Cry1的mRNA转录水平具有昼夜节律,但是在牙周炎的情况下节律消失了,其发生的原因可能与炎性细胞因子有关。
    This study aimed to investigate the expression of circadian clock genes in mouse alveolar bone, and the possible reasons for these changes. Fifty C57 mice were orally inoculated with P. gingivalis, establishing a model of periodontitis using healthy mice as controls. The alveolar bone of both groups was taken for micro-computed tomography scanning to measure the amount of attachment loss, and the relative expression of mRNA in each clock gene and periodontitis related inflammatory factor was detected by real-time fluorescence quantitative polymerase chain reaction (qRT-PCR). After the establishment of the mouse model, the height of alveolar bone in the periodontitis group was significantly lower than that in the normal group (p < 0.05). The relative transcriptional level of Bmal1, Per2, and Cry1 mRNA was in the circadian rhythm in the normal group (p ≤ 0.05), while in the periodontitis group, its circadian rhythm disappeared and the transcriptional level characteristics were changed. Interleukin (IL)-6, tumor necrosis factor-alpha (TNF-α), and interferon (IFN-γ) mRNA transcriptional level were elevated in the periodontitis group compared to the normal group. In conclusion, the mRNA transcriptional level of Bmal1, Per2, and Cry1 in alveolar bone of normal mice has circadian rhythm, but the rhythm disappears under the condition of periodontitis, and the cause of its occurrence may be related to inflammatory cytokines.
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  • 文章类型: Journal Article
    肌肉减少症是一种与年龄有关的疾病,涉及肌肉质量和功能的进行性下降,导致跌倒风险增加,脆弱,和死亡率。虽然确切的机制还不完全清楚,与衰老相关的过程,如炎症,氧化应激,线粒体能力降低,细胞凋亡导致了这种下降。随着年龄的增长,昼夜节律系统的破坏可能会在骨骼肌中启动这些通路,在肌少症发作之前。目前,没有治疗肌肉减少症的药物,只有抵抗运动和适当的营养才能延缓其发病。褪黑激素,来源于色氨酸,由于其时间生物学,成为治疗少肌症的特殊候选药物,抗氧化剂,和抗炎特性。它对线粒体和细胞器的影响,它是合成的,对骨骼肌老化至关重要,进一步凸显其潜力。在这次审查中,我们讨论了时钟基因对肌肉衰老的影响,特别提到骨骼肌中的外围时钟基因,以及它们与褪黑激素的关系,这是一种潜在的治疗方法。
    Sarcopenia is an age-related condition that involves a progressive decline in muscle mass and function, leading to increased risk of falls, frailty, and mortality. Although the exact mechanisms are not fully understood, aging-related processes like inflammation, oxidative stress, reduced mitochondrial capacity, and cell apoptosis contribute to this decline. Disruption of the circadian system with age may initiate these pathways in skeletal muscle, preceding the onset of sarcopenia. At present, there is no pharmacological treatment for sarcopenia, only resistance exercise and proper nutrition may delay its onset. Melatonin, derived from tryptophan, emerges as an exceptional candidate for treating sarcopenia due to its chronobiotic, antioxidant, and anti-inflammatory properties. Its impact on mitochondria and organelle, where it is synthesized and crucial in aging skeletal muscle, further highlights its potential. In this review, we discuss the influence of clock genes in muscular aging, with special reference to peripheral clock genes in the skeletal muscle, as well as their relationship with melatonin, which is proposed as a potential therapy against sarcopenia.
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