Sex identification

性别鉴定
  • 文章类型: Journal Article
    银杏是一种罕见的雌雄异株物种,因其多种应用而受到重视,并在全球范围内种植。本研究旨在开发一种快速有效的方法来确定银杏的性别。用高光谱成像仪扫描代表年度生长阶段的绿色和黄色叶子,和RGB图像的分类模型,光谱特征,并建立了光谱和图像特征的融合。最初,ResNet101模型使用比例缩放-背景扩展预处理方法对RGB数据集进行分类,达到90.27%的精度。Further,支持向量机(SVM)等机器学习算法,线性判别分析(LDA),应用子空间判别分析(SDA)。利用SVM和SDA在绿叶阶段和LDA在黄叶阶段获得了最佳结果。预测精度分别为87.35%和98.85%,分别。为了充分利用最优模型,提出了一种两阶段周期预定(PP)方法,并利用光谱和图像特征建立了融合数据集。预测集的总体准确率高达96.30%。这是首次利用高光谱成像建立银杏性别分类标准技术框架的研究,为工业和生态应用提供了有效的工具,并有可能对其他雌雄异株植物进行分类。
    Ginkgo biloba L. is a rare dioecious species that is valued for its diverse applications and is cultivated globally. This study aimed to develop a rapid and effective method for determining the sex of a Ginkgo biloba. Green and yellow leaves representing annual growth stages were scanned with a hyperspectral imager, and classification models for RGB images, spectral features, and a fusion of spectral and image features were established. Initially, a ResNet101 model classified the RGB dataset using the proportional scaling-background expansion preprocessing method, achieving an accuracy of 90.27%. Further, machine learning algorithms like support vector machine (SVM), linear discriminant analysis (LDA), and subspace discriminant analysis (SDA) were applied. Optimal results were achieved with SVM and SDA in the green leaf stage and LDA in the yellow leaf stage, with prediction accuracies of 87.35% and 98.85%, respectively. To fully utilize the optimal model, a two-stage Period-Predetermined (PP) method was proposed, and a fusion dataset was built using the spectral and image features. The overall accuracy for the prediction set was as high as 96.30%. This is the first study to establish a standard technique framework for Ginkgo sex classification using hyperspectral imaging, offering an efficient tool for industrial and ecological applications and the potential for classifying other dioecious plants.
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  • 文章类型: Journal Article
    1.雄性和雌性Chukarpart很难根据其形态或早期生长过程中的Chromobox-Helicase-DNA结合(CHD)进行区分。目前的研究开发了一种新颖的,简单,基于新定义的性别鉴定基因泛素相关蛋白2(UBAP2)的Chukarpart低成本快速性别鉴定方案。UBAP2-W和UBAP2-Z同源基因之间的多态性长度允许在该物种中容易进行性别歧视。分子性别分析基于两个基因的同时扩增,在异系雌性中产生两个不同的扩增子(947bp和535bp),在同系雄性中只有一个条带(535bp),用琼脂糖凝胶电泳容易检测4。该技术简单方便,可用于Chukarpart的遗传性别确定。
    1. Male and female Chukar partridges are difficult to differentiate based on their morphology or by the Chromobox-Helicase-DNA binding (CHD) during early growth.2. The current study developed a novel, simple, low-cost and rapid sexing protocol for Chukar partridges based on the newly defined sexing gene ubiquitin-associated protein 2 (UBAP2).3. The length of polymorphism between UBAP2-W and UBAP2-Z homologous genes allows for easy sex discrimination in this species. Molecular sexing analysis was based on the simultaneous amplification of both genes, resulting in two distinct amplicons (947 bp and 535 bp) in heterogametic females and only a single band (535 bp) in homogametic males, which is easy to detect with agarose gel electrophoresis.4. This technique is simple and convenient for genetic sex determination in Chukar partridges.
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  • 文章类型: Journal Article
    雏鸭的性别鉴定是家禽养殖业的关键步骤,准确的性别鉴定有利于精确育种和节约成本。在这项研究中,提出了一种基于声信号的雏鸭性别识别方法。第一步,收集小鸭发声,并应用改进的谱减法和高通滤波来减少噪声的影响。然后,通过使用具有3个参数的双阈值端点检测方法来自动检测小鸭的发声:短时能量(STE),短时过零率(ZCR),和持续时间(D)。在从小鸭发声中提取Mel-Spectrogram特征之后,改进的Res2Net深度学习算法用于性别分类。该算法引入了挤压和激励(SE)注意机制和Ghost模块,以改善Res2Net的瓶颈,从而提高模型精度,减少参数数量。烧蚀实验结果表明,SE注意机制的引入使模型精度提高了2.01%,而Ghost模块将模型参数的数量减少了7.26M,将FLOP减少了0.85G。此外,将该算法与5种最先进的(SOTA)算法进行了比较,结果表明,该算法具有最佳的成本-效果,准确地说,召回,特异性,参数数量,以及94.80、94.92、94.69、1891M的FLOP,和3.46G,分别。之后,发声检测得分和平均置信度策略用于预测个体小鸭的性别,模型的准确率达到96.67%。总之,本研究提出的方法可以有效地检测小鸭的性别,为小鸭的性别自动鉴定提供参考。
    Sex identification of ducklings is a critical step in the poultry farming industry, and accurate sex identification is beneficial for precise breeding and cost savings. In this study, a method for identifying the sex of ducklings based on acoustic signals was proposed. In the first step, duckling vocalizations were collected and an improved spectral subtraction method and high-pass filtering were applied to reduce the influence of noise. Then, duckling vocalizations were automatically detected by using a double-threshold endpoint detection method with 3 parameters: short-time energy (STE), short-time zero-crossing rate (ZCR), and duration (D). Following the extraction of Mel-Spectrogram features from duckling vocalizations, an improved Res2Net deep learning algorithm was used for sex classification. This algorithm was introduced with the Squeeze-and-Excitation (SE) attention mechanism and Ghost module to improve the bottleneck of Res2Net, thereby improving the model accuracy and reducing the number of parameters. The ablative experimental results showed that the introduction of the SE attention mechanism improved the model accuracy by 2.01%, while the Ghost module reduced the number of model parameters by 7.26M and the FLOPs by 0.85G. Moreover, this algorithm was compared with 5 state-of-the-art (SOTA) algorithms, and the results showed that the proposed algorithm has the best cost-effectiveness, with accuracy, recall, specificity, number of parameters, and FLOPs of 94.80, 94.92, 94.69, 18.91M, and 3.46G, respectively. After that, the vocalization detection score and the average confidence strategy were used to predict the sex of individual ducklings, and the accuracy of the proposed model reached 96.67%. In conclusion, the method proposed in this study can effectively detect the sex of ducklings and serve as a reference for automated sex identification of ducklings.
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  • 文章类型: Journal Article
    雌雄异株植物的性别主要由遗传因素决定,但它也可以通过环境线索如外源植物激素转化。赤霉素(GA)是众所周知的开花和性发育的诱导剂,然而,赤霉素在雌雄异株菠菜(SpinaciaoleraceaL.)中诱导的性别转换的途径仍然难以捉摸。基于使用T11A和SSR19分子标记的GA3应用前后的性别检测,我们通过外源施用GA3证实并提高了GA对单个雌性植物的男性化效应,显示完全转化和功能性雄蕊。对赤霉素不敏感(SpGAI)的沉默,一个单一的DELLA家族蛋白,是一个中央GA信号抑制因子,结果类似的男性化。我们还表明,SpGAI可以与菠菜KNOX转录因子SHOTMERISTEMLESS(SpSTM)物理相互作用,这是拟南芥中花分生组织身份调节剂STM的同源物。SpSTM的沉默也使菠菜中的雌花男性化。此外,SpSTM可以直接结合SpPI的内含子,从而抑制发育中雌花中的SpPI表达。总的来说,我们的结果表明,GA通过菠菜中的SpGAI-SpSTM-SpPI调节模块诱导女性男性化过程。这些见解可能有助于阐明雌雄异株植物性别转换系统的分子机制,同时也阐明了单性花产生的生理基础,从而在植物中建立了雄花。
    The sex of dioecious plants is mainly determined by genetic factors, but it can also be converted by environmental cues such as exogenous phytohormones. Gibberellic acids (GAs) are well-known inducers of flowering and sexual development, yet the pathway of gibberellin-induced sex conversion in dioecious spinach (Spinacia oleracea L.) remains elusive. Based on sex detection before and after GA3 application using T11A and SSR19 molecular markers, we confirmed and elevated the masculinization effect of GA on a single female plant through exogenous applications of GA3, showing complete conversion and functional stamens. Silencing of GIBBERELLIC ACID INSENSITIVE (SpGAI), a single DELLA family protein that is a central GA signaling repressor, results in similar masculinization. We also show that SpGAI can physically interact with the spinach KNOX transcription factor SHOOT MERISTEMLESS (SpSTM), which is a homolog of the flower meristem identity regulator STM in Arabidopsis. The silencing of SpSTM also masculinized female flowers in spinach. Furthermore, SpSTM could directly bind the intron of SpPI to repress SpPI expression in developing female flowers. Overall, our results suggest that GA induces a female masculinization process through the SpGAI-SpSTM-SpPI regulatory module in spinach. These insights may help to clarify the molecular mechanism underlying the sex conversion system in dioecious plants while also elucidating the physiological basis for the generation of unisexual flowers so as to establish dioecy in plants.
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  • 文章类型: Journal Article
    准确的性别识别对于研究鸟类的繁殖和进化至关重要。本研究旨在探索和评价一种无创性别识别方法在扬州鹅中的应用效果。在这个实验中,收集600个鹅卵。毛根组织用于PCR扩增,分子测序,和肛门倒置以早期识别小鹅的性别。根据2周龄鹅羽肉组织的DNA扩增结果,凝胶电泳在436bp(CHD1-Z)和330bp(CHD1-W)处出现条带。这种方法考虑了鹅羽毛的基础,以加速性别识别的过程。通过检查解剖家禽的性别进行验证,PCR凝胶电泳和分子测序性别鉴定的准确率为100%,而肛门内翻的平均准确率为97.41%。在0至18周龄的羽毛生长趋势比较中,羽毛根重量(FRW),羽毛根长度(FRL),羽毛分支长度(FBL),同龄扬州鹅的羽毛轴直径(FSD)在雄性和雌性之间没有显着差异(P>0.05)。6周时,FRW,FRL,男性FSD和女性FRL增长迅速;它们的增长分别增长了84.43、67.58、45.10和69.42%,分别。10岁时,男性FRL,男性FBL,女性FBL分别增加37.31、34.81和21.72。Boltzmann模型被认为是扬州鹅羽毛的最佳拟合模型。根据性别之间的羽毛生长趋势进行早期性别识别是不可行的。本研究为水禽的早期性别鉴定提供了方便可靠的技术手段,并作为保护家禽种群繁殖的生态策略。
    Accurate gender identification is crucial for the study of bird reproduction and evolution. The current study aimed to explore and evaluate the effectiveness of a noninvasive method for gender identification in Yangzhou geese. In this experiment, 600 goose eggs were collected. Hair root tissues were used for PCR amplification, molecular sequencing, and anal inversion for early sex recognition in goslings. According to the DNA amplification results for the feather pulp tissue of 2-wk-old geese, bands appeared at 436 bp (CHD1-Z) and 330 bp (CHD1-W) upon gel electrophoresis. This method considered the base of goose feathers to accelerate the process of gender recognition. By examining the sex of anatomized poultry for verification, the accuracy rate of PCR gel electrophoresis and molecular sequencing sex identification was 100%, whereas the average accuracy rate of anal inversion was 97.41%. In the comparison of feather growth trends at 0 to 18 wk of age, the feather root weight (FRW), feather root length (FRL), feather branch length (FBL), and feather shaft diameter (FSD) of Yangzhou goose of the same age were not significantly different between males and females (P > 0.05). At 6 wk of age, the FRW, FRL, and FSD in males and FRL in females increased rapidly; their growth increased by 84.43, 67.58, 45.10, and 69.42%, respectively. At 10 wk of age, the male FRL, male FBL, and female FBL increased by 37.31, 34.81, and 21.72, respectively. The Boltzmann model was found to be the best-fitting model for the feathers of male Yangzhou geese. Early sex identification based on feather growth trends between the sexes is not feasible. This study provides a convenient and reliable technical means for early sex identification of waterfowl and serves as an ecological strategy for protecting the reproduction of poultry populations.
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  • 文章类型: Randomized Controlled Trial
    猕猴桃植物是雌雄异株的,它的性别通常从开花时的花朵形态中确定,这需要几年的时间。在幼年期进行现场识别是非常必要但具有挑战性的。在此,通过筛选与不同猕猴桃植物物种性别相关的友好男孩(FrBy)基因获得靶DNA。其互补序列分为两部分作为引物DNA,并进一步连接到不同的金纳米颗粒(GNP)。靶DNA和引物DNA之间的连接将促进等离子体二聚体的形成。暗视野显微镜(DFM)可以区分不同聚集状态的颗粒。基于增加二聚体比例同时减少大聚集体比例的标准,优化了各种条件。此外,两个拉曼报道分子(RR)分别标记在纳米探针上,和等离子体二聚体导致位于二聚体纳米间隙的两个报道分子的巨大拉曼增强。双盲试验证明了该方法在猕猴桃植物叶片实际样品上的可行性。我们的SERS方法很灵敏,具体,在猕猴桃播种阶段进行快速性别鉴定分析,在现场管理决策方面大有可为。
    The kiwi plant is dioecious, and its sex is generally identified from flower morphology at blossoming, which takes several years. It is quite necessary but challenging to on-spot identify the plant sex in juvenile stage. Here the target DNA was obtained by screening the Friendly boy (FrBy) gene which is sex-related for different kiwi plant species. Its complementary sequence was divided into two parts as primer DNA and further attached to different gold nanoparticles (GNPs). The connection between target DNA and primer DNA will promote the formation of plasmonic dimers. Dark field microscopy (DFM) can distinguish particles in different aggregation states. Various conditions were optimized based on the standard of increasing the proportion of dimers while reducing that of large aggregates. Furthermore, two Raman reporters (RR) are separately labeled on the nanoprobes, and the plasmonic dimers lead to a tremendous Raman enhancement of two reporters located at the dimer nanogap. Double-blind tests proved the feasibility of this method on the actual samples of kiwi plant leaves. Our SERS method is sensitive, specific, and reliable for rapid sex identification analysis at the kiwi seeding stage, with great promise for decision-making in field management.
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  • 文章类型: Journal Article
    1.emus的性染色体在很大程度上是同态的。因此,分子性别鉴定的标准方法是基于性别连锁基因中内含子长度变异的筛选方法。然而,emu性别鉴定需要昂贵且耗时的PCR-RFLP或多重PCR方法。该实验使用定向PCR扩增和毛细管电泳性别鉴定方案。在女性(ZW)中观察到两个不同的峰,而在男性(ZZ)中只观察到一个峰。这种性别鉴定技术被证明是快速的,非侵入性,并且高度敏感,可能有助于验证e的性别比例和繁殖管理。
    1. Sex chromosomes of emus are largely homomorphic. Therefore, the standard methodology for molecular sexing based on screening intron length variations in sex-linked genes is not applicable. However, emu sexing requires costly and time-consuming PCR-RFLP or multiplex PCR methods.2. This experiment used a directed PCR amplification and capillary electrophoresis sexing protocol. Two distinct peaks were observed in females (ZW), while only one peak was observed in males (ZZ).3. This sexing technique proved to be rapid, non-invasive, and highly sensitive and may be useful for verifying the sex ratio and breeding management of emus.
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  • 文章类型: Journal Article
    性别选择技术极大地影响了全球猪的生产。传统的早期胚胎性别鉴定方法需要专业的技术人员和复杂的实验室仪器。猪胚胎和猪肉产品的快速现场性别鉴定仍然具有挑战性。在这项研究中,我们开发了一种基于CRISPR/Cas12a的荧光可视化护理点性别确定测试,准确,易于在现场实施。与聚合酶链反应(PCR)或环介导等温扩增(LAMP)偶联的CRISPR/Cas12a测定采用精确设计的引物和靶向性别决定区Y(SRY)和锌指蛋白X-连接(ZFX)基因的单向导RNA。将PCR和LAMP扩增子裂解,随后产生用便携式蓝光和紫外光透射光仪可检测的荧光产物。使用RApidVisualCRISPR(RAVI-CRISPR)测定检测到每微升大约两个拷贝的ZFX和SRY基因。这种方法是一种敏感的,便宜,多才多艺,和即时测试。该技术还有其他潜在的应用,比如确定不同牲畜物种的性别,检测家畜致病病原体和评估肉制品的质量。
    Sex selection technologies have immensely impacted swine production globally. Conventional earlier embryo sex identification methods require professional technicians and sophisticated laboratory instruments. Rapid on-site gender identification of porcine embryos and pork products remains challenging. In this study, we developed a CRISPR/Cas12a-based fluorescence visualization point-of-care sex determination test that is rapid, accurate and easy to implement on-site. The CRISPR/Cas12a assay coupled with either the polymerase chain reaction (PCR) or loop-mediated isothermal amplification (LAMP) employs precisely designed primers and single-guide RNAs targeting the sex-determining region Y (SRY) and the zinc finger protein X-linked (ZFX) genes. PCR and LAMP amplicons were cleaved with the subsequent generation of fluorescing products detectable with portable blue and ultraviolet light transilluminators. Approximately two copies per microliter of the ZFX and SRY genes were detected using the RApid VIsual CRISPR (RAVI-CRISPR) assay. This method is a sensitive, inexpensive, versatile, and point-of-care test. The technology has other potential applications like determining the sex of diverse livestock species, detecting livestock disease-causing pathogens and evaluating the quality of meat products.
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  • 文章类型: Journal Article
    黄连木(P.chinensis),雌雄异株的植物,在中国已被广泛发现。在农业生产中,雌性中国植物比雄性植物更重要。因为它们的种子可以作为生物柴油的理想原料。然而,由于可用的转录组学和基因组信息的缺乏,在幼苗阶段很难区分中国山竹植物的性别。在这项工作中,进行Illumina配对末端RNA测序测定,以解开雌性和雄性中国金牛花蕾的转录组学谱。总的来说,从雌性和雄性cDNA文库获得50,925,088和51,470,578个干净的读数,分别。经过质量检查和重新组装,总共筛选了83,370个基因,平均长度为1.3kb。总的来说,在至少一个NR中可以匹配64,539个单基因(77.48%),NT,Swiss-Prot,COG,KEGG,和GO数据库,其中71个与中国紫菜花发育有关。此外,在17,028个单基因中鉴定出21,662个简单序列重复(SSR)基序,单核苷酸基序是中华黄曲霉中最主要的重复类型(52.59%),其次是二核苷酸(22.29%),三核苷酸(20.15%)。最丰富的重复序列是AG/CT(13.97%),其次是AAC/GTT(6.75%)和AT/TA(6.10%)。基于这些SSR,设计了983个EST-SSR引物,其中151个是随机选择进行验证的。在这些经过验证的EST-SSR标记中,发现25个SSR标记在雄性和雌性植物之间具有多态性。一个SSR标记,namelyPCSSR55,在雌性植物中表现出优异的特异性,可以清楚地区分雄性和雌性。总之,我们的研究结果不仅表明EST-SSR标记在区分雄性和雌性中国紫菜方面非常有效,而且为植物幼苗的性别确定提供了坚实的框架。
    Pistacia chinensis Bunge (P. chinensis), a dioecious plant species, has been widely found in China. The female P. chinensis plants are more important than male plants in agricultural production, as their seeds can serve as an ideal feedstock for biodiesel. However, the sex of P. chinensis plants is hard to distinguish during the seedling stage due to the scarcity of available transcriptomic and genomic information. In this work, Illumina paired-end RNA sequencing assay was conducted to unravel the transcriptomic profiles of female and male P. chinensis flower buds. In total, 50,925,088 and 51,470,578 clean reads were obtained from the female and male cDNA libraries, respectively. After quality checks and de novo assembly, a total of 83,370 unigenes with a mean length of 1.3 kb were screened. Overall, 64,539 unigenes (77.48%) could be matched in at least one of the NR, NT, Swiss-Prot, COG, KEGG, and GO databases, 71 of which were putatively related to the floral development of P. chinensis. Additionally, 21,662 simple sequence repeat (SSR) motifs were identified in 17,028 unigenes of P. chinensis, and the mononucleotide motif was the most dominant type of repeats (52.59%) in P. chinensis, followed by dinucleotide (22.29%), trinucleotide (20.15%). The most abundant repeats were AG/CT (13.97%), followed by AAC/GTT (6.75%) and AT/TA (6.10%). Based on these SSR, 983 EST-SSR primers were designed, 151 of which were randomly chosen for validation. Of these validated EST-SSR markers, 25 SSR markers were found to be polymorphic between male and female plants. One SSR marker, namelyPCSSR55, displayed excellent specificity in female plants, which could clearly distinguish between male and female P. chinensis. Altogether, our findings not only reveal that the EST-SSR marker is extremely effective in distinguishing between male and female P. chinensis but also provide a solid framework for sex determination of plant seedlings.
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  • 文章类型: Journal Article
    微创采样用于确定中国巨型sal(Andriasdavidianus)的性别。在繁殖季节从6个成年人和在非繁殖季节从19个个体(7个成年人和12个少年)收集尿液样本(n=25)。尿液中的激素睾丸激素(T)和雌酮-3-葡糖醛酸(E1G)是从中国大鱼(CGS)中收集的,并通过酶免疫测定(EIA)分析激素提取物。数据表明,在繁殖季节,雄性CGSs的尿液T浓度显着高于雌性(p<0.05),在非繁殖季节更为明显(p<0.01)。在繁殖季节,雄性的尿液E1G浓度不如雌性明显(p<0.01),而在非繁殖季节则显着降低(p<0.05)。在繁殖季节和非繁殖季节,所有雄性sal的尿液T/E1G值均显着高于雌性(p<0.01)。在这项研究中发现了一个有趣的模式:在繁殖和非繁殖季节,雄性CGS的尿液log10(T/E1G)值高于1,而雌性的值低于1。以及CGS的成人和亚成人年龄组。这项研究中有25只sal,通过使用log10(T/E1G)值为1,准确率达到100%。log10(T/E1G)值的结果为今后CGSs性别鉴定的发展提供了新的思路,也为人工释放制剂中准确的性别鉴定奠定了基础。这是第一项研究表明尿激素中的T/E1G比率对于CGS的性别鉴定是可靠的。此外,尿激素T/E1G措施是两栖动物或单态物种以及仅在繁殖季节可见第二性特征的人的有希望的性别识别工具。
    Minimally invasive sampling was used to determine the sex of Chinese giant salamanders (Andrias davidianus). Urine samples (n = 25) were collected from 6 adults in the breeding season and from 19 individuals (7 adults and 12 juveniles) in the non-breeding season. The hormone testosterone (T) and estrone-3-glucuronide (E1G) in urine were collected from Chinese giant salamanders (CGSs), and the hormone extracts were analyzed by enzyme immunoassays (EIA). The data demonstrated that the urine T concentration of the male CGSs was significantly higher than that of the females during the breeding season (p < 0.05) and even more pronounced during the non-breeding season (p < 0.01). The urine E1G concentration of the males was less pronounced than that of the females during the breeding season (p < 0.01) and significantly lower during the non-breeding season (p < 0.05). The urine T/E1G values of all the male salamanders were significantly higher than those of the females (p < 0.01) during both the breeding season and the non-breeding season. An interesting pattern was found in this study: the value of urine log10(T/E1G) of the male CGSs was higher than 1, whereas the value for the females was lower than 1, during both the breeding and non-breeding seasons, and in the adult and sub-adult age groups of CGSs. There were 25 salamanders in this study and the accuracy rate reached 100% by using a log10(T/E1G) value of 1. The results of the log10(T/E1G) value provide new insight into the future development of the sex identification of CGSs and also lay the foundation for accurate sex identification in the preparation for artificial release. This is the first study to show that the T/E1G ratio in urinary hormones is reliable for the sex identification of CGSs. Additionally, urinary hormone T/E1G measures are promising sex identification tools for amphibian or monomorphic species and for those whose secondary sex characteristics are visible only during the breeding season.
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