Enzyme Catalysis

酶催化
  • 文章类型: Journal Article
    熊果苷,对苯二酚的糖基化化合物,基于糖苷键的构型,以β-熊果苷和α-熊果苷的两种形式存在。作为一种安全稳定的增白剂,熊果苷广泛用于化妆品,它有抗氧化剂,抗菌,抗炎,和抗肿瘤活性。通过植物提取生产熊果苷面临着诸如长植物生长期,复杂的提取过程,和低收益率。熊果苷的化学合成受到苛刻的反应条件的影响,差的立体选择性,和低收益率。近年来,由于反应条件简单温和,生物合成成为生产熊果苷最流行的方法,低成本,和环境友好。本文综述了熊果苷四种生物合成策略的研究进展,包括植物转化,酶催化,全细胞催化,和微生物发酵。讨论了这些生物合成策略的优点和局限性。并提出了未来的研究方向。
    Arbutin, a glycosylated compound of hydroquinone, exists in two forms of β-arbutin and α-arbutin based on the configuration of the glycosidic bond. As a safe and stable whitening agent, arbutin is widely used in cosmetics, and it has antioxidant, antimicrobial, anti-inflammatory, and anti-tumor activities. The production of arbutin by plant extraction faces challenges such as long plant growth periods, complex extraction processes, and low yields. The chemical synthesis of arbutin suffers from harsh reaction conditions, poor stereo-selectivity, and low yields. In recent years, biosynthesis emerges as the most popular method to produce arbutin because of the simple and mild reaction conditions, low costs, and environmental friendliness. This review summarizes the research progress in four biosynthetic strategies for arbutin, including plant conversion, enzyme catalysis, whole-cell catalysis, and microbial fermentation. The advantages and limitations of these biosynthetic strategies are discussed, and future research directions are proposed.
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  • 文章类型: Journal Article
    酶活性生物电池是有希望的绿色选择,为下一代生物电子学和可植入医疗设备提供动力。然而,现有的基于酶生物燃料化学的电源由于固体和庞大的电池结构而表现出有限的按比例缩小的可行性。因此,微型和柔软的替代品需要与植入物和组织整合。这里,由纳米微升液滴建造的生物电池,由还原的烟酰胺腺嘌呤二核苷酸的酶催化氧化,产生电输出和电源离子通量在液滴网络。液滴生物电池组件的优化可确保超过24小时的稳定输出电流为〜13,000pA,代表产出比以前的方法增加了600多倍,包括光驱动过程。酶驱动的液滴生物电池为生物电子学和生物离子电子学开辟了新的途径,例如,在集成的合成组织中驱动电化学信号传输的能力。
    Enzyme-enabled biobatteries are promising green options to power the next-generation of bioelectronics and implantable medical devices. However, existing power sources based on enzymatic biofuel chemistry exhibit limited scale-down feasibility due to the solid and bulky battery structures. Therefore, miniature and soft alternatives are needed for integration with implants and tissues. Here, a biobattery built from nanolitre droplets, fuelled by the enzyme-enabled oxidation of reduced nicotinamide adenine dinucleotide, generates electrical outputs and powers ion fluxes in droplet networks. Optimization of the droplet biobattery components ensures a stable output current of ~13,000 pA for over 24 h, representing a more than 600-fold increase in output over previous approaches, including light-driven processes. The enzyme-enabled droplet biobattery opens new avenues in bioelectronics and bioiontronics, exemplified by tasks such as the ability to drive chemical signal transmission in integrated synthetic tissues.
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  • 文章类型: Journal Article
    添加O-连接的N-乙酰葡糖胺(O-GlcNAc)是活性分子的重要修饰,如蛋白质,碳水化合物,和天然产品。然而,由于缺乏糖基转移酶,用GlcNAc修饰的萜类糖苷衍生物的合成仍然是一项具有挑战性的任务,催化GlcNAc向萜类化合物转移的关键酶。在这项研究中,我们证明了酶突变体UGT74AC1T79Y/L48M/R28H/L109I/S15A/M76L/H47R将GlcNAc从尿苷二磷酸(UDP)-GlcNAc有效地转移到多种萜类化合物中。这种强大的酶被用来合成萜类化合物的GlcNAc修饰衍生物,包括莫格罗,甜菊醇,穿心莲内酯,原人参二醇,甘草次酸,熊果酸,和桦木酸的第一次。为了解开UDP-GlcNAc识别的机制,我们确定了与UDP-GlcNAc复合的灭活突变体UGT74AC1His18A/Asp111A的X射线晶体结构,分辨率为1.66。通过分子动力学模拟和活性分析,我们揭示了UDP-GlcNAc识别的分子机制和催化重要的氨基酸。总的来说,这项研究不仅提供了一种能够使天然产物糖多样化的有效生物催化剂,而且还阐明了糖基转移酶识别UDP-GlcNAc的结构基础。
    The addition of the O-linked N-acetylglucosamine (O-GlcNAc) is a significant modification for active molecules, such as proteins, carbohydrates, and natural products. However, the synthesis of terpenoid glycoside derivatives decorated with GlcNAc remains a challenging task due to the absence of glycosyltransferases, key enzymes for catalyzing the transfer of GlcNAc to terpenoids. In this study, we demonstrated that the enzyme mutant UGT74AC1T79Y/L48M/R28H/L109I/S15A/M76L/H47R efficiently transferred GlcNAc from uridine diphosphate (UDP)-GlcNAc to a variety of terpenoids. This powerful enzyme was employed to synthesize GlcNAc-decorated derivatives of terpenoids, including mogrol, steviol, andrographolide, protopanaxadiol, glycyrrhetinic acid, ursolic acid, and betulinic acid for the first time. To unravel the mechanism of UDP-GlcNAc recognition, we determined the X-ray crystal structure of the inactivated mutant UGT74AC1His18A/Asp111A in complex with UDP-GlcNAc at a resolution of 1.66 Å. Through molecular dynamic simulation and activity analysis, we revealed the molecular mechanism and catalytically important amino acids directly involved in the recognition of UDP-GlcNAc. Overall, this study not only provided a potent biocatalyst capable of glycodiversifying natural products but also elucidated the structural basis for UDP-GlcNAc recognition by glycosyltransferases.
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  • 文章类型: Journal Article
    法尼化的查耳酮由于其不同的生物活性而受到研究人员的青睐。然而,到目前为止,文献中只描述了五种天然存在的法尼基化的查耳酮。这里,据报道,土曲霉芳香族异戊烯基转移酶AtaPT对六个查耳酮进行了法尼基化。获得十四个单法尼化的查耳酮(1F1-1F5,2F1-2F3,3F1,3F2,4F1,4F2,5F1,6F1和6F2)和二法尼化产物(2F3)。显著丰富了天然法尼化查耳酮的多样性。其中十种是C-法尼基化产品,通过化学合成补充O-法尼化的查耳酮。在这项研究之前没有报道14种产品。产生的化合物中有9种(1F2-1F5,2F1-2F3,5F1和6F1)对α-葡萄糖苷酶具有抑制作用,IC50值为24.08±1.44至190.0±0.28μM。其中,IC50值为24.08±1.44μM的化合物2F3和IC50值为30.09±0.59μM的1F4在α-葡糖苷酶抑制试验中显示出比阳性对照阿卡波糖强约20倍,IC50为536.87±24.25μM。
    Farnesylated chalcones were favored by researchers due to their different biological activities. However, only five naturally occurring farnesylated chalcones were described in the literature until now. Here, the farnesylation of six chalcones by the Aspergillus terreus aromatic prenyltransferase AtaPT was reported. Fourteen monofarnesylated chalcones (1F1-1F5, 2F1-2F3, 3F1, 3F2, 4F1, 4F2, 5F1, 6F1, and 6F2) and a difarnesylated product (2F3) were obtained, enriching the diversity of natural farnesylated chalcones significantly. Ten of them are C-farnesylated products, which complement O-farnesylated chalcones by chemical synthesis. Fourteen products have not been reported prior to this study. Nine of the produced compounds (1F2-1F5, 2F1-2F3, 5F1, and 6F1) exhibited inhibitory effect on α-glucosidase with IC50 values ranging from 24.08 ± 1.44 to 190.0 ± 0.28 μM. Among them, compounds 2F3 with IC50 value at 24.08 ± 1.44 μM and 1F4 with IC50 value at 30.09 ± 0.59 μM showed about 20 times stronger than the positive control acarbose with an IC50 at 536.87 ± 24.25 μM in α-glucosidase inhibitory assays.
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  • 文章类型: Journal Article
    背景:手性糠醇是合成有价值的官能化吡喃酮如稀有糖L-红糖的重要前体。然而,对映体纯手性生物基糠醇的合成仍然很少。在这项工作中,我们提出了从几丁质衍生的N-乙酰基-D-葡萄糖胺(NAG)向对映体纯的含氮(R)-和(S)-3-乙酰氨基-5-(1-羟乙基)呋喃(3A5HEF)的化学酶促路线。
    结果:通过离子液体/硼酸催化脱水从NAG获得3-乙酰氨基-5-乙酰呋喃(3A5AF),分离收率约为31%。来自天花链霉菌(ScCR)和芽孢杆菌属的羰基还原酶。发现ECU0013(YueD)是3A5AF不对称还原的良好催化剂。(R)-和(S)-3A5HEF的对映互补合成以高达>99%的产率和>99%的对映体过量(ee)值进行。此外,(R)-3A5HEF的生物催化合成在制备规模上得到了证明,分离收率为65%。
    结论:通过将化学催化与酶催化相结合,成功开发了手性糠醇的两步工艺,具有优异的对映选择性。这项工作证明了化学催化和生物催化组合对生物基呋喃的选择性增值的能力。
    BACKGROUND: Chiral furfuryl alcohols are important precursors for the synthesis of valuable functionalized pyranones such as the rare sugar L-rednose. However, the synthesis of enantiopure chiral biobased furfuryl alcohols remains scarce. In this work, we present a chemoenzymatic route toward enantiopure nitrogen-containing (R)- and (S)-3-acetamido-5-(1-hydroxylethyl)furan (3A5HEF) from chitin-derived N-acetyl-D-glucosamine (NAG).
    RESULTS: 3-Acetamido-5-acetylfuran (3A5AF) was obtained from NAG via ionic liquid/boric acid-catalyzed dehydration, in an isolated yield of approximately 31%. Carbonyl reductases from Streptomyces coelicolor (ScCR) and Bacillus sp. ECU0013 (YueD) were found to be good catalysts for asymmetric reduction of 3A5AF. Enantiocomplementary synthesis of (R)- and (S)-3A5HEF was implemented with the yields of up to  >  99% and the enantiomeric excess (ee) values of  >  99%. Besides, biocatalytic synthesis of (R)-3A5HEF was demonstrated on a preparative scale, with an isolated yield of 65%.
    CONCLUSIONS: A two-step process toward the chiral furfuryl alcohol was successfully developed by integrating chemical catalysis with enzyme catalysis, with excellent enantioselectivities. This work demonstrates the power of the combination of chemo- and biocatalysis for selective valorization of biobased furans.
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  • 文章类型: Journal Article
    提出了一种基于双酶催化的pH响应比色法,用于在环境依赖性浓度下快速简便地检测和定量nanoPET。通过角质酶和脂肪酶的协同催化将纳米PET水解为对苯二甲酸,可以以溴甲酚紫为指示剂进行灵敏检测。随着nanoPET检测浓度从0mg/mL增加到2mg/mL,颜色从紫色变为亮黄色,这可以通过UV-Vis检测。这种肉眼方法对nanoPET检测具有很高的灵敏度,视觉检测截止值为31.00μg/mL,在0~1mg/mL范围内线性关系良好,LOD为22.84μg/mL。在湖水和啤酒样品中纳米PET的检测中验证了该方法的可靠性。平均回收率为87.1%。开发的双酶比色化学传感器具有作为灵敏检测nanoPET的强大而有效的平台的潜力。
    A pH-responsive colorimetric method based on dual-enzyme catalysis for rapid and facile detection and quantification of nanoPET at environment-dependent concentration is proposed. The nanoPET was hydrolyzed by the synergistic catalysis of cutinase and lipase to terephthalic acid which can be sensitive detected using bromocresol purple as the indicator. The color changed from purple to bright yellow as the nanoPET detection concentration increased from 0 mg/mL to 2 mg/mL which can be detected by UV-Vis. This naked-eye method has a high sensitivity for nanoPET detection with the visual detection cutoff of 31.00 μg/mL, and has a good linearity in the range of 0 ∼ 1 mg/mL with LOD of 22.84 μg/mL. The reliability of this method is verified in the detection of nanoPET in lake water and beer samples, with an average recovery of 87.1 %. The as-developed dual-enzyme colorimetric chemosensor holds promising potential as a robust and effective platform for the sensitive detection of nanoPET.
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  • 文章类型: Journal Article
    乙酰羟酸合酶(AHAS)是生物合成支链氨基酸的关键酶之一。它也是筛选除草剂和抗生素的有效目标。在这项研究中,我们提出了一种制备大肠杆菌AHASI全酶(EcAHASI)的方法,具有出色的稳定性,这为我们重新研究蛋白质的体外催化特性提供了坚实的基础。结果表明,以这种方式合成的EcAHASI在丙酮酸和2-酮丁酸(2-KB)作为双底物的催化方面表现出与枯草芽孢杆菌乙酰乳酸合酶相似的功能,产生四种2-羟基-3-酮酸,包括(S)-2-乙酰乳酸,(S)-2-乙酰-2-羟基丁酸酯,(S)-2-丙酰乳酸,和(S)-2-丙酰基-2-羟基丁酸酯。反应的定量表明两种底物几乎完全消耗,和化合物(S)-2-乙酰-2-羟基丁酸酯以四种主要产物中最高的产率形成。此外,该蛋白质还缩合两个2-KB分子以提供(S)-2-丙酰基-2-羟基丁酸酯。进一步的探索表明,EcAHASI将丙酮酸盐/2-KB和亚硝基苯连接成两种芳基异羟胺酸N-羟基-N-苯基乙酰胺和N-羟基-N-苯基丙酰胺。这些发现增强了我们对EcAHASI催化特性的理解。此外,该酶作为催化剂在C-N键构建中的应用显示出广阔的潜力。
    Acetohydroxyacid synthase (AHAS) is one of the key enzymes of the biosynthesis of branched-chain amino acids, it is also an effective target for the screening of herbicides and antibiotics. In this study we present a method for preparing Escherichia coli AHAS I holoenzyme (EcAHAS I) with exceptional stability, which provides a solid ground for us to re-investigate the in vitro catalytic properties of the protein. The results show EcAHAS I synthesized in this way exhibits similar function to Bacillus subtilis acetolactate synthase in its catalysis with pyruvate and 2-ketobutyrate (2-KB) as dual-substrate, producing four 2-hydroxy-3-ketoacids including (S)-2-acetolactate, (S)-2-aceto-2-hydroxybutyrate, (S)-2-propionyllactate, and (S)-2-propionyl-2-hydroxybutyrate. Quantification of the reaction indicates that the two substrates almost totally consume, and compound (S)-2-aceto-2- hydroxybutyrate forms in the highest yield among the four major products. Moreover, the protein also condenses two molecules of 2-KB to furnish (S)-2-propionyl-2-hydroxybutyrate. Further exploration manifests that EcAHAS I ligates pyruvate/2-KB and nitrosobenzene to generate two arylhydroxamic acids N-hydroxy-N-phenylacetamide and N-hydroxy-N-phenyl- propionamide. These findings enhance our comprehension of the catalytic characteristics of EcAHAS I. Furthermore, the application of this enzyme as a catalyst in construction of C-N bonds displays promising potential.
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  • 文章类型: Journal Article
    Thiram是一种有毒的杀真菌剂,广泛用于控制水果中的病原体。尽管已知福美双在植物组织中降解,参与这一过程的关键酶仍未被研究。在这项研究中,我们报道了番木瓜中的tau类谷胱甘肽S-转移酶(TCpGST)可以降解硫双。该酶很容易通过在大肠杆菌中异源表达获得,对其他秋兰姆二硫化物表现出低滥交,并在生理反应条件下催化硫双降解。定点诱变表明,G位点残基S67对硫双的酶活性具有关键影响,而残基S13的突变降低了谷胱甘肽氧化酶的活性,没有显着影响硫双降解活性。二硫代氨基甲酸二甲酯的形成,随后转化为二硫化碳,和二甲基二硫代氨基甲酰基次磺酸作为硫酰胺降解产物表明,硫酰胺经历了涉及二硫键断裂的碱性水解。GST选择性抑制剂4-氯-7-硝基-2,1,3-苯并恶二唑(NBD-Cl)的应用将木瓜皮硫双降解活性降低了95%,说明这是硫双在木瓜中的主要降解途径。TCpGST还催化了杀真菌剂百菌清和噻菌灵的降解,残基S67再次显示对酶活性的关键影响。这些结果填补了在理解植物GST的催化混杂性方面的重要知识空白,并揭示了对水果中福瑞香的命运和降解产物的新见解。
    Thiram is a toxic fungicide extensively used for the management of pathogens in fruits. Although it is known that thiram degrades in plant tissues, the key enzymes involved in this process remain unexplored. In this study, we report that a tau class glutathione S-transferase (GST) from Carica papaya can degrade thiram. This enzyme was easily obtained by heterologous expression in Escherichia coli, showed low promiscuity toward other thiuram disulfides, and catalyzed thiram degradation under physiological reaction conditions. Site-directed mutagenesis indicated that G-site residue S67 shows a key influence for the enzymatic activity toward thiram, while mutation of residue S13, which reduced the GSH oxidase activity, did not significantly affect the thiram-degrading activity. The formation of dimethyl dithiocarbamate, which was subsequently converted into carbon disulfide, and dimethyl dithiocarbamoylsulfenic acid as the thiram degradation products suggested that thiram undergoes an alkaline hydrolysis that involves the rupture of the disulfide bond. Application of the GST selective inhibitor 4-chloro-7-nitro-2,1,3-benzoxadiazole reduced papaya peel thiram-degrading activity by 95%, indicating that this is the main degradation route of thiram in papaya. GST from Carica papaya also catalyzed the degradation of the fungicides chlorothalonil and thiabendazole, with residue S67 showing again a key influence for the enzymatic activity. These results fill an important knowledge gap in understanding the catalytic promiscuity of plant GSTs and reveal new insights into the fate and degradation products of thiram in fruits.
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  • 文章类型: Journal Article
    多酶的暴露位点不足和活性位点竞争是阻碍其治疗效果的两个主要因素。这里,通过简单的室温离子交换工艺设计和制备了一种相结纳米材料(无定形晶体CuxS-Ag2S)。在Cu7S4纳米晶中加入少量Ag+,它将Cu7S4转化为非晶态的CuxS,并同时产生晶体Ag2S。在这个结构中,无定形CuxS表面上的突出键提供了丰富的活性位点以优化治疗活性。同时,非晶态通过非辐射弛豫增强光热效应,并且由于其低热阻,相结CuxS-Ag2S形成了显着的温度梯度,以解锁优化的热电治疗。此外,受益于非晶态的高度不对称性,该材料形成自旋极化状态,可以有效地抑制电子-空穴复合。这样,热电效应可以通过提供电子和空穴来促进酶催化的循环,能够增强热电疗法与多酶活性的耦合,从而诱导优异的抗肿瘤性能。更重要的是,通过密度泛函理论模拟的催化过程证明,Ag通过对O2的有利吸附减轻了Cu位点的负担,并防止了活性位点的竞争。
    The insufficient exposure sites and active site competition of multienzyme are the two main factors to hinder its therapeutic effect. Here, a phase-junction nanomaterial (amorphous-crystalline CuxS-Ag2S) is designed and prepared through a simple room temperature ion-exchange process. A small amount of Ag+ is added into Cu7S4 nanocrystals, which transforms Cu7S4 into amorphous phased CuxS and produces crystalline Ag2S simultaneously. In this structure, the overhanging bonds on the amorphous CuxS surface provide abundant active sites for optimizing the therapeutic activity. Meanwhile, the amorphous state enhances the photothermal effect through non-radiative relaxation, and due to its low thermal resistance, phase-junction CuxS-Ag2S forms a significant temperature gradient to unlock the optimized thermo-electrodynamic therapy. Furthermore, benefiting from the high asymmetry of the amorphous state, the material forms a spin-polarized state that can effectively inhibit electron-hole recombination. In this way, the thermoelectric effect can facilitate the enzyme-catalyzed cycle by providing electrons and holes, enabling an enhanced coupling of thermoelectric therapy with multienzyme activity, which induces excellent anti-tumor performance. More importantly, the catalytic process simulated by density-functional theory proves that Ag+ alleviates the burden on the Cu sites through favorable adsorption of O2 and prevents active site competition.
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  • 文章类型: Journal Article
    N1-甲基腺苷(m1A)是一种普遍的转录后RNA修饰,修饰的分布和动力学在细胞发育中起着关键的表观组学作用。目前,人AlkBFe(II)/α-酮戊二酸依赖性双加氧酶家族成员ALKBH3是唯一已知的mRNAm1A去甲基酶,但其催化机制尚不清楚。这里,我们介绍了在合成抗体结晶伴侣的帮助下获得的ALKBH3-寡核苷酸交联复合物的结构。结构和生化结果表明,ALKBH3利用两个β-发夹(β4-环-β5和β\'-环-β\')和α2螺旋来促进单链底物结合。此外,Asp194周围的气泡状区域和活性口袋(Thr133)内的关键残基使m1A-和3-甲基胞苷(m3C)修饰的底物能够特异性识别和去甲基化。Thr133突变为AlkBFe(II)/α-酮戊二酸依赖性双加氧酶家族成员FTO或ALKBH5中的相应残基,将ALKBH3底物选择性从m1A转化为N6-甲基腺苷(m6A),Asp194删除也是如此。我们的发现为理解ALKBH3的底物识别和m1A去甲基化的机制提供了分子基础。这项研究有望帮助化学探针的结构指导设计,用于进一步的功能研究和治疗应用。
    N1 -methyladenosine (m1 A) is a prevalent post-transcriptional RNA modification, and the distribution and dynamics of the modification play key epitranscriptomic roles in cell development. At present, the human AlkB Fe(II)/α-ketoglutarate-dependent dioxygenase family member ALKBH3 is the only known mRNA m1 A demethylase, but its catalytic mechanism remains unclear. Here, we present the structures of ALKBH3-oligo crosslinked complexes obtained with the assistance of a synthetic antibody crystallization chaperone. Structural and biochemical results showed that ALKBH3 utilized two β-hairpins (β4-loop-β5 and β\'-loop-β\'\') and the α2 helix to facilitate single-stranded substrate binding. Moreover, a bubble-like region around Asp194 and a key residue inside the active pocket (Thr133) enabled specific recognition and demethylation of m1 A- and 3-methylcytidine (m3 C)-modified substrates. Mutation of Thr133 to the corresponding residue in the AlkB Fe(II)/α-ketoglutarate-dependent dioxygenase family members FTO or ALKBH5 converted ALKBH3 substrate selectivity from m1 A to N6 -methyladenosine (m6 A), as did Asp194 deletion. Our findings provide a molecular basis for understanding the mechanisms of substrate recognition and m1 A demethylation by ALKBH3. This study is expected to aid structure-guided design of chemical probes for further functional studies and therapeutic applications.
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