workflow

工作流
  • 文章类型: Journal Article
    我们最近揭示了各种蛋白质组学设施中蛋白质电晕表征的显着变异性,这表明独立研究之间的数据集没有可比性。这种异质性主要来自样品制备方案的差异,质谱工作流程,和原始数据处理。为了解决这个问题,我们制定了标准化的协议和统一的样品制备工作流程,从我们之前的研究中,将均匀的蛋白质电晕消化物分配到几个表现最好的蛋白质组学中心。我们还研究了使用类似的质谱仪器对数据均匀性,标准化的数据库搜索参数和数据处理工作流程的影响。我们的发现揭示了蛋白质电晕数据均匀性的显着逐步改善,使用类似的仪器和通过统一的数据库搜索,在不同的设施中,蛋白质鉴定的重叠度从11%增加到40%。我们确定了数据异质性背后的关键参数,并为设计实验提供了建议。我们的发现将显着提高蛋白质电晕分析在诊断和治疗应用中的稳健性。
    We recently revealed significant variability in protein corona characterization across various proteomics facilities, indicating that data sets are not comparable between independent studies. This heterogeneity mainly arises from differences in sample preparation protocols, mass spectrometry workflows, and raw data processing. To address this issue, we developed standardized protocols and unified sample preparation workflows, distributing uniform protein corona digests to several top-performing proteomics centers from our previous study. We also examined the influence of using similar mass spectrometry instruments on data homogeneity and standardized database search parameters and data processing workflows. Our findings reveal a remarkable stepwise improvement in protein corona data uniformity, increasing overlaps in protein identification from 11% to 40% across facilities using similar instruments and through a uniform database search. We identify the key parameters behind data heterogeneity and provide recommendations for designing experiments. Our findings should significantly advance the robustness of protein corona analysis for diagnostic and therapeutics applications.
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  • 文章类型: Journal Article
    背景:入院前诊所(PAC)在围手术期护理中至关重要,提供评估,教育,以及手术前的患者优化。在COVID-19大流行期间,由于缺乏视频咨询的基础设施,PAC通过实施电话访问进行了调整。虽然大流行大大增加了虚拟护理的使用,包括视频预约,作为面对面咨询的替代方案,我们的PAC没有使用视频会诊进行术前评估.
    目的:本研究旨在开发,工具,并将术前视频咨询整合到PAC工作流程中。
    方法:使用Plan-Do-Study-Act(PDSA)方法进行了前瞻性质量改进项目。项目重点发展,实施,并整合伦敦健康科学中心和圣约瑟夫医疗保健中心的虚拟视频咨询(伦敦,安大略省,加拿大)在PAC中。系统收集数据以监测接受视频会诊的患者人数,解决患者流量问题,并增加视频咨询的比例。PAC之间的通信,外科医生办公室,分析患者的持续改善情况。解决了技术挑战,简化了程序,以促进约会日的视频通话。
    结果:PAC团队,其中包括医学专业人员,麻醉,护理,药房,职业治疗,和物理治疗,为手术患者提供术前评估和教育,每年在3个医院地点进行约8000次咨询。在最初的PDSA循环之后,干预措施持续将视频咨询利用率提高到17%,表明积极的进展。随着PDSA周期3的开始,在早期阶段有明显的激增至29%的利用率。这种上升趋势还在继续,在周期的后期,虚拟视频咨询的利用率达到38%。这一提高的水平在整个2023年始终保持,突显了我们干预措施的持续成功。
    结论:质量改进过程显著增强了机构的术前视频咨询工作流程。通过了解PAC内部的复杂性,在不影响效率的情况下,进行了战略干预,以整合视频咨询,士气,或安全。该项目强调了通过周到地整合虚拟护理技术来改善医疗保健服务的潜力。
    BACKGROUND: The preadmission clinic (PAC) is crucial in perioperative care, offering evaluations, education, and patient optimization before surgical procedures. During the COVID-19 pandemic, the PAC adapted by implementing telephone visits due to a lack of infrastructure for video consultations. While the pandemic significantly increased the use of virtual care, including video appointments as an alternative to in-person consultations, our PAC had not used video consultations for preoperative assessments.
    OBJECTIVE: This study aimed to develop, implement, and integrate preoperative video consultations into the PAC workflow.
    METHODS: A prospective quality improvement project was undertaken using the Plan-Do-Study-Act (PDSA) methodology. The project focused on developing, implementing, and integrating virtual video consultations at London Health Sciences Centre and St. Joseph Health Care (London, Ontario, Canada) in the PAC. Data were systematically collected to monitor the number of patients undergoing video consultations, address patient flow concerns, and increase the percentage of video consultations. Communication between the PAC, surgeon offices, and patients was analyzed for continuous improvement. Technological challenges were addressed, and procedures were streamlined to facilitate video calls on appointment days.
    RESULTS: The PAC team, which includes professionals from medicine, anesthesia, nursing, pharmacy, occupational therapy, and physiotherapy, offers preoperative evaluation and education to surgical patients, conducting approximately 8000 consultations annually across 3 hospital locations. Following the initial PDSA cycles, the interventions consistently improved the video consultation utilization rate to 17%, indicating positive progress. With the onset of PDSA cycle 3, there was a notable surge to a 29% utilization rate in the early phase. This upward trend continued, culminating in a 38% utilization rate of virtual video consultations in the later stages of the cycle. This heightened level was consistently maintained throughout 2023, highlighting the sustained success of our interventions.
    CONCLUSIONS: The quality improvement process significantly enhanced the institution\'s preoperative video consultation workflow. By understanding the complexities within the PAC, strategic interventions were made to integrate video consultations without compromising efficiency, morale, or safety. This project highlights the potential for transformative improvements in health care delivery through the thoughtful integration of virtual care technologies.
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  • 文章类型: Journal Article
    本研究探索使用AI检测乳腺癌淋巴结转移,旨在分析广泛的医学影像数据。AI帮助临床医生识别转移灶并制定精确的治疗计划。采用图像分析和机器学习,该研究评估了人工智能识别医学成像数据中模式的潜力。该研究评估了将基于AI的检测集成到诊断工作流程中的可行性。与医院的合作努力包括收集注释的乳腺癌淋巴结数据,优化工作流,和临床验证结果。预期结果旨在强调AI在增强乳腺癌患者早期发现和治疗决策方面的关键作用。预期结果旨在强调AI在改善乳腺癌患者的早期发现和治疗决策中的关键作用,同时优化手术室护理工作流程的效率。
    This study explores using AI for detecting lymph node metastasis in breast cancer, aiming to analyze extensive medical imaging data. AI assists clinicians in identifying metastases and formulating precise treatment plans. Employing image analysis and machine learning, the research assesses AI\'s potential to recognize patterns within medical imaging data. The study evaluates the feasibility of integrating AI-based detection into diagnostic workflows. Collaborative efforts with hospitals include collecting annotated breast cancer lymph node data, optimizing workflows, and clinically validating results. Anticipated outcomes aim to highlight AI\'s crucial role in enhancing early detection and treatment decisions for breast cancer patients. Anticipated results aim to underscore the crucial role of AI in improving early detection and treatment decision-making for breast cancer patients while optimizing efficiency in the operating room nursing workflow.
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  • 文章类型: Journal Article
    本案例研究提出了一个迭代开发的过程,供临床信息学家识别,分析,并应对社区护理环境中与健康信息技术(HIT)相关的安全事件(该研究得到了CIHR卫生系统影响研究金计划的支持。我们还要感谢温哥华沿海卫生的宝贵贡献。).目标是在临床信息学团队中建立能力,将患者安全纳入他们的工作,并帮助他们识别和应对与HIT相关的安全事件。最终开发的与技术相关的安全事件分析过程包括三个关键组成部分:1)使用社会技术模型分析自愿报告的与HIT相关的安全事件的内部工作流程,2)安全拥挤,以扩大从经审查的事件中学到的知识,和3)随着时间的推移对所有事件进行累积分析,以识别和响应模式。快速识别和理解HIT安全问题的系统方法使信息学团队能够主动降低风险并防止伤害。
    This case study presents a process that was iteratively developed for clinical informaticians to identify, analyse, and respond to safety events related to health information technologies (HIT) in community care settings (This research was supported by the CIHR Health Systems Impact Fellowship Program. We would also like to thank Vancouver Coastal Health for their valuable contributions.). The goal was to build capacity within a clinical informatics team to integrate patient safety into their work and to help them recognize and respond to HIT-related safety events. The technology-related safety event analysis process that was ultimately developed included three key components: 1) an internal workflow to analyse voluntarily reported HIT-related safety events using a sociotechnical model, 2) safety huddles to amplify learnings from reviewed events, and 3) a cumulative analysis of all events over time to identify and respond to patterns. A systematic approach to quickly identify and understand HIT safety concerns enables informatics teams to proactively reduce risks and prevent harm.
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  • 文章类型: Journal Article
    背景:数字工具正在逐步重塑医院医疗保健专业人员(HCP)的日常工作。虽然这种转变有很大的希望,这会导致令人沮丧的经历,引起人们对对临床医生福祉的负面影响的担忧。
    目的:本研究的目的是全面探索HCP在日常生活中使用数字工具的生活体验。
    方法:对瑞士14家医院的24个医学专业的52个HCPs进行了定性深入访谈。
    结果:归纳主题分析揭示了4个主要主题:数字工具使用,工作流和流程,HCPs护理交付经验,以及数字化转型和管理变革。在这些主题中,出现了6个有趣的悖论,我们假设这些悖论可能部分解释了医院数字化面临的挑战的持续存在:效率的承诺和效率低下的现实,从面对面到界面的转变,杂耍挫折和奉献,信息获取和信任的幻觉,工作流程和护理路径的复杂性和交叉点,以及影子IT的机遇和挑战。
    结论:我们的研究强调了承认和考虑HCP的经验以支持医疗保健技术的转变并避免或减轻数字化可能带来的任何潜在负面经验的核心重要性。HCP的观点增加了对医疗保健中长期存在的信息学问题的相关见解,并可能提出应对未来挑战时要遵循的新策略。
    BACKGROUND: Digital tools are progressively reshaping the daily work of health care professionals (HCPs) in hospitals. While this transformation holds substantial promise, it leads to frustrating experiences, raising concerns about negative impacts on clinicians\' well-being.
    OBJECTIVE: The goal of this study was to comprehensively explore the lived experiences of HCPs navigating digital tools throughout their daily routines.
    METHODS: Qualitative in-depth interviews with 52 HCPs representing 24 medical specialties across 14 hospitals in Switzerland were performed.
    RESULTS: Inductive thematic analysis revealed 4 main themes: digital tool use, workflow and processes, HCPs\' experience of care delivery, and digital transformation and management of change. Within these themes, 6 intriguing paradoxes emerged, and we hypothesized that these paradoxes might partly explain the persistence of the challenges facing hospital digitalization: the promise of efficiency and the reality of inefficiency, the shift from face to face to interface, juggling frustration and dedication, the illusion of information access and trust, the complexity and intersection of workflows and care paths, and the opportunities and challenges of shadow IT.
    CONCLUSIONS: Our study highlights the central importance of acknowledging and considering the experiences of HCPs to support the transformation of health care technology and to avoid or mitigate any potential negative experiences that might arise from digitalization. The viewpoints of HCPs add relevant insights into long-standing informatics problems in health care and may suggest new strategies to follow when tackling future challenges.
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  • 文章类型: Letter
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  • 文章类型: Journal Article
    与单模态成像相比,给药组织样品的多模态成像分析可以提供对治疗活性化合物对靶组织的影响的更全面的见解。例如,药物化合物和内源性大分子受体的同时空间定位很难在单个成像实验中实现。在这里,我们提出了将成像质谱与免疫组织化学(IHC)荧光成像和明场显微镜成像相结合的多模式工作流程。成像质谱可以直接绘制药物化合物和代谢物,IHC荧光成像可以显示大的蛋白质,和明场显微镜成像提供组织形态信息。单细胞分辨率图像通常难以使用成像质谱来获取,但是易于使用IHC荧光和明场显微镜成像来获取。因此,质谱图像的空间锐化将允许与其他更高分辨率的显微镜图像进行更高的保真度配准。成像质谱空间分辨率可以通过计算图像融合工作流程预测到更精细的值,它对质谱图像中的强度值与高空间分辨率显微镜图像的特征之间的关系进行建模。作为概念的证明,我们的多模式工作流程应用于从Sprague-Dawley大鼠中提取的脑组织,Corynantheidine.四个候选数学模型,包括线性回归,偏最小二乘回归,随机森林回归,和二维卷积神经网络(2-DCNN),进行了测试。随机森林和2-DCNN模型最准确地预测了每个像素的强度值以及质谱图像的整体模式,同时还提供了最佳的空间分辨率增强。在这里,图像融合使能预测的corynantheidine质谱图像,GABA,和谷氨酰胺到大约2.5μm的空间分辨率,与以25μm空间分辨率获取的原始图像相比,有了显着改善。然后将预测的质谱图像与μ-阿片受体的H&E图像和IHC荧光图像共配准,以评估corynantheidine与脑细胞的共定位。我们的研究还提供了将图像融合用于生物应用时要考虑的不同评估参数的见解。
    Multimodal imaging analyses of dosed tissue samples can provide more comprehensive insights into the effects of a therapeutically active compound on a target tissue compared to single-modal imaging. For example, simultaneous spatial mapping of pharmaceutical compounds and endogenous macromolecule receptors is difficult to achieve in a single imaging experiment. Herein, we present a multimodal workflow combining imaging mass spectrometry with immunohistochemistry (IHC) fluorescence imaging and brightfield microscopy imaging. Imaging mass spectrometry enables direct mapping of pharmaceutical compounds and metabolites, IHC fluorescence imaging can visualize large proteins, and brightfield microscopy imaging provides tissue morphology information. Single-cell resolution images are generally difficult to acquire using imaging mass spectrometry but are readily acquired with IHC fluorescence and brightfield microscopy imaging. Spatial sharpening of mass spectrometry images would thus allow for higher fidelity coregistration with other higher-resolution microscopy images. Imaging mass spectrometry spatial resolution can be predicted to a finer value via a computational image fusion workflow, which models the relationship between the intensity values in the mass spectrometry image and the features of a high-spatial resolution microscopy image. As a proof of concept, our multimodal workflow was applied to brain tissue extracted from a Sprague-Dawley rat dosed with a kratom alkaloid, corynantheidine. Four candidate mathematical models, including linear regression, partial least-squares regression, random forest regression, and two-dimensional convolutional neural network (2-D CNN), were tested. The random forest and 2-D CNN models most accurately predicted the intensity values at each pixel as well as the overall patterns of the mass spectrometry images, while also providing the best spatial resolution enhancements. Herein, image fusion enabled predicted mass spectrometry images of corynantheidine, GABA, and glutamine to approximately 2.5 μm spatial resolutions, a significant improvement compared to the original images acquired at 25 μm spatial resolution. The predicted mass spectrometry images were then coregistered with an H&E image and IHC fluorescence image of the μ-opioid receptor to assess colocalization of corynantheidine with brain cells. Our study also provides insights into the different evaluation parameters to consider when utilizing image fusion for biological applications.
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  • 文章类型: Journal Article
    在过去的十年中,虚拟病房的采用激增。虚拟病房旨在防止不必要的入院,加快家庭出院,提高患者满意度,这对面临住院相关风险的老年人口特别有利。因此,虚拟康复病房(VRW)正在进行大量投资,尽管有证据表明它们的实施取得了不同程度的成功。然而,虚拟病房工作人员为快速实施这些创新护理模式所经历的促进者和障碍仍然知之甚少。
    本文介绍了在澳大利亚VRW上工作的医院工作人员的见解,以应对对旨在防止住院的计划日益增长的需求。我们探讨了员工对VRW的促进者和障碍的看法,在服务设置和交付上发光。
    使用非收养对21名VRW员工进行了定性访谈,放弃,放大,传播,可持续发展(NASSS)框架。使用框架分析和NASSS框架的7个领域进行数据分析。
    结果被映射到NASSS框架的7个领域。(1)条件:管理一定的条件,特别是那些涉及合并症和社会文化因素的,可以是具有挑战性的。(2)技术:VRW证明适合无认知障碍的技术患者,通过远程监控和视频通话在临床决策中提供优势。然而,互操作性问题和设备故障导致员工沮丧,强调迅速应对技术挑战的重要性。(3)价值主张:VRW授权患者选择他们的护理地点,扩大农村社区获得护理的机会,并为老年人提供家庭治疗。(4)采用者和(5)组织:尽管有这些好处,从面对面治疗到远程治疗的文化转变引入了工作流程的不确定性,专业责任,资源分配,和摄入过程。(6)更广泛的系统和(7)嵌入:随着服务的不断发展,以解决医院能力的差距,必须优先考虑正在进行的适应。这包括完善患者顺利转移回医院的过程,解决技术方面的问题,确保护理的无缝连续性,并深思熟虑地考虑护理负担如何转移到患者及其家人身上。
    在这项定性研究中,探索医护人员对创新VRW的体验,我们确定了实施和可接受性的几个驱动因素和挑战。这些发现对考虑在服务设置和交付方面为老年人实施VRW的未来服务具有影响。未来的工作将集中在评估VRW的患者和护理人员体验。
    UNASSIGNED: Over the past decade, the adoption of virtual wards has surged. Virtual wards aim to prevent unnecessary hospital admissions, expedite home discharge, and enhance patient satisfaction, which are particularly beneficial for the older adult population who faces risks associated with hospitalization. Consequently, substantial investments are being made in virtual rehabilitation wards (VRWs), despite evidence of varying levels of success in their implementation. However, the facilitators and barriers experienced by virtual ward staff for the rapid implementation of these innovative care models remain poorly understood.
    UNASSIGNED: This paper presents insights from hospital staff working on an Australian VRW in response to the growing demand for programs aimed at preventing hospital admissions. We explore staff\'s perspectives on the facilitators and barriers of the VRW, shedding light on service setup and delivery.
    UNASSIGNED: Qualitative interviews were conducted with 21 VRW staff using the Nonadoption, Abandonment, Scale-up, Spread, and Sustainability (NASSS) framework. The analysis of data was performed using framework analysis and the 7 domains of the NASSS framework.
    UNASSIGNED: The results were mapped onto the 7 domains of the NASSS framework. (1) Condition: Managing certain conditions, especially those involving comorbidities and sociocultural factors, can be challenging. (2) Technology: The VRW demonstrated suitability for technologically engaged patients without cognitive impairment, offering advantages in clinical decision-making through remote monitoring and video calls. However, interoperability issues and equipment malfunctions caused staff frustration, highlighting the importance of promptly addressing technical challenges. (3) Value proposition: The VRW empowered patients to choose their care location, extending access to care for rural communities and enabling home-based treatment for older adults. (4) Adopters and (5) organizations: Despite these benefits, the cultural shift from in-person to remote treatment introduced uncertainties in workflows, professional responsibilities, resource allocation, and intake processes. (6) Wider system and (7) embedding: As the service continues to develop to address gaps in hospital capacity, it is imperative to prioritize ongoing adaptation. This includes refining the process of smoothly transferring patients back to the hospital, addressing technical aspects, ensuring seamless continuity of care, and thoughtfully considering how the burden of care may shift to patients and their families.
    UNASSIGNED: In this qualitative study exploring health care staff\'s experience of an innovative VRW, we identified several drivers and challenges to implementation and acceptability. The findings have implications for future services considering implementing VRWs for older adults in terms of service setup and delivery. Future work will focus on assessing patient and carer experiences of the VRW.
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  • 文章类型: Journal Article
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