workflow

工作流
  • 文章类型: Journal Article
    目的:就影像组学工作流程的不同方面的定义达成共识,以支持其转化为临床应用。此外,评估专家对成功实施临床工作流程的重要挑战的观点。
    方法:通过多阶段过程达成共识。第一阶段包括定义筛选,对22个工作流定义中的术语进行语义映射的回顾性分析,以及初始基线定义的编译。第2阶段和第3阶段包括Delphi过程,来自参加德国研究基金会(DFG)优先计划2177的站点的45名专家。第二阶段旨在就定义提案达成广泛共识,而第三阶段确定了翻译挑战的重要性。
    结果:分析了22种出版物(2012-2020年出版)的工作流定义。提取了69个定义术语,映射,和语义歧义(例如,同义和同义术语)被识别和解决。共识定义是通过Delphi过程开发的。包括七个阶段和37个方面的最终定义达成了较高的总体共识(>89%的专家“同意”或“强烈同意”)。两个方面没有达成强烈共识。此外,Delphi流程从参与专家的角度确定并描述了影像组学工作流程中的十大最重要挑战。
    结论:为了克服现有定义之间的语义不一致,并提供定义良好的,广泛,可引用的术语,我们为基于影像组学的设置编制了一致的工作流程定义,并将术语映射到现有文献.此外,对临床应用最相关的挑战进行了表征.
    缺乏标准化是影像组学成功临床翻译的一个主要障碍。这里,我们报告了关于影像组学研究不同方面的共识工作流程定义,并强调了推进影像组学临床应用的重要挑战.
    结论:已发布的放射组学工作流程术语不一致,阻碍标准化和翻译。开发了具有高度一致性的共识放射组学工作流定义提案。供科学界进一步开发的公开成果资源。
    OBJECTIVE: Achieving a consensus on a definition for different aspects of radiomics workflows to support their translation into clinical usage. Furthermore, to assess the perspective of experts on important challenges for a successful clinical workflow implementation.
    METHODS: The consensus was achieved by a multi-stage process. Stage 1 comprised a definition screening, a retrospective analysis with semantic mapping of terms found in 22 workflow definitions, and the compilation of an initial baseline definition. Stages 2 and 3 consisted of a Delphi process with over 45 experts hailing from sites participating in the German Research Foundation (DFG) Priority Program 2177. Stage 2 aimed to achieve a broad consensus for a definition proposal, while stage 3 identified the importance of translational challenges.
    RESULTS: Workflow definitions from 22 publications (published 2012-2020) were analyzed. Sixty-nine definition terms were extracted, mapped, and semantic ambiguities (e.g., homonymous and synonymous terms) were identified and resolved. The consensus definition was developed via a Delphi process. The final definition comprising seven phases and 37 aspects reached a high overall consensus (> 89% of experts \"agree\" or \"strongly agree\"). Two aspects reached no strong consensus. In addition, the Delphi process identified and characterized from the participating experts\' perspective the ten most important challenges in radiomics workflows.
    CONCLUSIONS: To overcome semantic inconsistencies between existing definitions and offer a well-defined, broad, referenceable terminology, a consensus workflow definition for radiomics-based setups and a terms mapping to existing literature was compiled. Moreover, the most relevant challenges towards clinical application were characterized.
    UNASSIGNED: Lack of standardization represents one major obstacle to successful clinical translation of radiomics. Here, we report a consensus workflow definition on different aspects of radiomics studies and highlight important challenges to advance the clinical adoption of radiomics.
    CONCLUSIONS: Published radiomics workflow terminologies are inconsistent, hindering standardization and translation. A consensus radiomics workflow definition proposal with high agreement was developed. Publicly available result resources for further exploitation by the scientific community.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    室性心动过速(VT),和它的发生,仍然是心脏猝死的主要原因之一,因此,对于结构性心脏[KahleA-K,JungenC,AlkenF-A,ScherschelK,WillemsS,PürerfellnerH等人。缺血性心肌病患者室性心动过速的管理:当代医疗设备。Europace2022;24:538-51]。导管消融术已成为复发性室性心动过速患者安全有效的治疗选择[CroninEM,BogunFM,莫里·P,PeichlP,陈M,NamboodiriN等人。2019年HRS/EHRA/APHRS/LAHRS关于室性心律失常导管消融的专家共识声明。心律2020;17:e2-154]。以前和目前的指南为VT消融术的指征以及潜在疾病的风险评估和评估提供指导。然而,没有提供关于程序策略的统一建议,消融时间,和中心设置。因此,这些细节似乎有很大的不同,和最近的数据是稀疏的。这项以医生为基础的欧洲心律协会调查旨在提供不仅对基础设施设置,而且对程序细节的见解。应用技术,消融策略,和程序端点。因此,这些发现可能提供真实的室性心动过速管理方案,并可能为其他中心提供指导.
    Ventricular tachycardia (VT), and its occurrence, is still one of the main reasons for sudden cardiac death and, therefore, for increased mortality and morbidity foremost in patients with structural heart [Kahle A-K, Jungen C, Alken F-A, Scherschel K, Willems S, Pürerfellner H et al. Management of ventricular tachycardia in patients with ischaemic cardiomyopathy: contemporary armamentarium. Europace 2022;24:538-51]. Catheter ablation has become a safe and effective treatment option in patients with recurrent VT [Cronin EM, Bogun FM, Maury P, Peichl P, Chen M, Namboodiri N et al. 2019 HRS/EHRA/APHRS/LAHRS expert consensus statement on catheter ablation of ventricular arrhythmias. Heart Rhythm 2020;17:e2-154]. Previous and current guidelines provide guidance on indication for VT ablation and risk assessment and evaluation of underlying disease. However, no uniform recommendation is provided regarding procedural strategies, timing of ablation, and centre setting. Therefore, these specifics seem to differ largely, and recent data are sparse. This physician-based European Heart Rhythm Association survey aims to deliver insights on not only infrastructural settings but also procedural specifics, applied technologies, ablation strategies, and procedural endpoints. Therefore, these findings might deliver a real-world scenario of VT management and potentially are of guidance for other centres.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    实施质量控制策略对于确保可重复性至关重要,准确度,代谢组学数据的意义。然而,这一关键步骤在代谢组学工作流程中经常被忽视,并且经常依赖于使用非标准化和不良报告的方案.为了解决目前在这方面的限制,我们开发了QComics,一个健壮的,易于实施和报告的数据质量监控方法。该协议以各种顺序步骤运行,旨在(i)纠正背景噪声和结转,(ii)检测信号漂移和“失控”观察,(iii)处理缺失的数据,(iv)移除异常值,(v)监测质量标记,以识别受不当收集影响的样品,预处理,或存储,(六)评估总体数据质量的精确性和准确性。值得注意的是,这个工具考虑了质量控制中经常被忽视的重要问题,例如需要单独处理缺失值和真正缺失的数据,以避免丢失相关的生物信息,以及分析前因素可能对代谢组学结果产生的巨大影响。总之,QComics中编制的指南可能有助于建立代谢组学领域质量控制的黄金标准建议和最佳实践.
    The implementation of quality control strategies is crucial to ensure the reproducibility, accuracy, and meaningfulness of metabolomics data. However, this pivotal step is often overlooked within the metabolomics workflow and frequently relies on the use of nonstandardized and poorly reported protocols. To address current limitations in this respect, we have developed QComics, a robust, easily implementable and reportable method for monitoring and controlling data quality. The protocol operates in various sequential steps aimed to (i) correct for background noise and carryover, (ii) detect signal drifts and \"out-of-control\" observations, (iii) deal with missing data, (iv) remove outliers, (v) monitor quality markers to identify samples affected by improper collection, preprocessing, or storage, and (vi) assess overall data quality in terms of precision and accuracy. Notably, this tool considers important issues often neglected along quality control, such as the need of separately handling missing values and truly absent data to avoid losing relevant biological information, as well as the large impact that preanalytical factors may elicit on metabolomics results. Altogether, the guidelines compiled in QComics might contribute to establishing gold standard recommendations and best practices for quality control within the metabolomics community.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    目标:在牙科诊所服用抗再吸收药物的患者存在药物相关性颌骨坏死(MRONJ)的风险,这给他们的临床医生带来了日常的挑战。本文旨在总结和重新审视三个最公认的管理和预防MRONJ的实践指南,这是由美国口腔颌面外科医师协会(AAOMS)提出的,并由《骨与矿物研究杂志》(JBMR)和《临床肿瘤学杂志》(JCO)发表。结果和案例研究:AAOMS立场文件侧重于不同药物的风险分层,管理决策树,危险因素,病理生理学,和疾病分期。JBMR国际共识提出了八个重点问题,通过系统审查解决了这些问题。JCO临床实践指南提出了六个临床问题,每个人都提出了切实可行的建议。总结了实用信息,并将其转换为可采用的患者护理工作流程,供临床医生在日常实践中遵循和应用。按照这些指南处理了三个案例研究。每位患者都接受了包括肺泡成形术在内的高级手术,拔牙,植入物放置,和颗粒骨移植。在患者护理工作流程的每个步骤中讨论并说明了一些未完全告知的考虑因素,其中包括风险沟通的细节,抗生素使用的最新情况,生物标志物,和毒品假期。
    结论:在开始侵入性治疗之前,应考虑与官方知情同意文件进行结构化风险沟通。在分期重建治疗之前,应提供家庭护理治疗的疾病控制阶段。药物假期和抗生素覆盖率可以根据个人情况和相关程序进行定制,并进行跨专业协调。
    OBJECTIVE: Patients taking antiresorptive medications in dental clinics are at risk of medication-related osteonecrosis of the jaw (MRONJ), which poses daily challenges for their clinicians. This paper aimed to summarize and revisit the three most recognized practice guidelines for the management and prevention of MRONJ, which were proposed by the American Association of Oral and Maxillofacial Surgeons (AAOMS), and presented by the Journal of Bone and Mineral Research (JBMR) and the Journal of Clinical Oncology (JCO). Results and case studies: The AAOMS position paper focused on risk stratification by different medications, management decision trees, risk factors, pathophysiology, and disease staging. The JBMR international consensus presented eight focused questions, which were addressed by systematic reviews. The JCO clinical practice guideline presented six clinical questions, and each concluded with practical recommendations. Practical information was summarized and converted into an adoptable patient care workflow for clinicians to follow and apply in daily practice. Three case studies presented were treated following these guidelines. Each patient underwent advanced surgeries including alveoloplasty, tooth extraction, implant placement, and particulate bone grafting. Some of the considerations not fully informed were discussed and illustrated in each step of the patient care workflow, which included specifics for risk communication, updates on the use of antibiotics, biomarkers, and drug holidays.
    CONCLUSIONS: Structured risk communication with official informed consent documentation should be considered before initiating invasive treatments. Disease control phase with home care therapy should be provided prior to staged reconstructive therapy. Drug holidays and antibiotics coverage can be customized based on individual conditions and related procedures with interprofessional coordination.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    目的:遵循ACR的既定管理指南,并提高对所有接受CT腹部和骨盆造影(CTAPw)检查的患者的偶发性肝脏病变(ILLs)的随访建议的依从性。在多学科护理团队的倡导下。
    方法:开发了一种强制性结构化放射学报告模块,用于CTAPw报告中的ILL建议。来自电子病历的数据描述了放射学报告的ILL患者及其临床风险诊断类别,并在可查询的电子数据库中列出。护士协调员启动了工作流程,将对ILL随访MRI的需求传达给订购医生和初级保健提供者。MRI是由ILL团队订购的。通过持续审查进行互动过程,以提高对合格患者的识别和对建议的依从性。
    结果:在2020年12月至2021年3月的初始发射阶段,在20,667个CTAPw检查中检测到1,577个ILL,对于那些现在推荐的人来说,114人中有36人(31.6%)在30天内接受了随访。在2021年1月至2022年6月之间,进行了117,520次CTAPws,并检测到4,371次ILL。使用ILL工作流程,在MRI现在队列中,542例患者中有202例(36.2%)在30天内进行了随访,迄今为止,542名患者中有368名(67.9%)完成了随访。
    结论:通过集中努力缩小在疾病护理方面的差距,从长远来看,对后续建议的遵守情况有所改善,尽管短期干预措施的依从性仍存在差距.多学科方法,放射学报告,和软件解决方案被用来改进一个复杂的过程。
    Follow established management guidelines from the ACR and improve adherence to follow-up recommendations for incidental liver lesions (ILLs) for all patients undergoing CT abdomen and pelvis with contrast (CTAPw) examinations, with advocacy from a multidisciplinary care team.
    A mandatory structured radiology reporting module was developed for use in CTAPw reports for ILL recommendations. Data from the electronic medical record describing patients with radiology-reported ILLs and their clinical risk diagnosis categories were tabulated in a queryable electronic database. A nurse co-ordinator initiated workflow to communicate the need for ILL follow-up MRI to ordering physicians and primary care providers. MRIs were ordered by the ILL team. An interactive process was undertaken with continuous review to improve identification of eligible patients and adherence to recommendations.
    During the initial launch phase from December 2020 to March 2021, 1,577 ILLs were detected on 20,667 CTAPw examinations, and for those with the characterize now recommendation, 36 of 114 (31.6%) received follow-up in 30 days. Between January 2021 and June 2022, 117,520 CTAPws were performed and 4,371 ILLs were detected. Using the ILL workflow, in the MRI now cohort, follow-up occurred within 30 days in 202 of 542 (36.2%) patients, and a total of 368 of 542 (67.9%) patients have completed their follow-up to date.
    Using a focused effort to close a gap in ILL care, adherence to follow-up recommendations improved over the long term, although there remains a gap in adherence to short-term interventions. A multidisciplinary approach, radiology reporting, and software solutions were leveraged to improve a complex process.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    暂无摘要。
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    偶然的研究发现对基于医院的研究生物库构成了相当大的挑战,因为它们是医疗保健和研究之间的中介。在一项联合行动中,中央生物银行ibdw(生物材料和数据的跨学科银行)与地方当局一起起草了一个连贯的概念,以完全符合相关的道德和数据隐私法规来管理偶然的研究结果。该概念是与德国生物库联盟(GBA)密切合作制定和阐述的。所有步骤的全面文档保证了过程的可追溯性。通过在重新识别有关个人之前对调查结果进行强制性评估,可以避免不必要的措施。根据知情同意书的规定,尊重个人的“不知情权”。作为一般原则,与个人的任何沟通都仅通过医院和具有适当知识和沟通技巧的合格医生进行。我们建议将此方案作为报告基于医院的生物库附带研究结果的工作流程的蓝图。
    Incidental research findings pose a considerable challenge to hospital-based research biobanks since they are acting as intermediaries between healthcare and research. In a joint action the centralized biobank ibdw (Interdisciplinary Bank of Biomaterials and Data Wuerzburg) together with local authorities drafted a coherent concept to manage incidental research findings in full compliance with relevant ethical and data privacy regulations. The concept was developed and elaborated in close collaboration with the German Biobank Alliance (GBA). Comprehensive documentation of all steps guarantees the traceability of the process. By a mandatory assessment of the findings prior to re-identification of the individual concerned, unnecessary measures can be avoided. The individual\'s \"right not to know\" is respected according to the stipulations of the informed consent. As a general principle any communication with the individual occurs exclusively through the hospital and by competent physicians with appropriate knowledge and communication skills. We propose this scheme as a blueprint for reporting workflows for incidental research findings at hospital-based biobanks.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    背景:临床决策支持系统通常采用并实施现有的临床实践指南,从而提高指南的可用性。提高指导方针的依从性,和数据集成。这些系统中的大多数使用临床实践指南的基于内部状态的模型来导出推荐,但不向用户提供对模型的全面洞察。
    目的:在这里,我们提出了一种基于动态指南可视化的新方法,该方法结合了个体患者当前的治疗背景。
    方法:我们得出了通过这种增强的指南可视化来满足的多个要求。使用业务流程和模型符号作为计算机可解释指南的表示格式,采用基于图形的表示和逻辑推断的组合来进行指南处理。使用业务规则引擎来推断上下文特定的指南可视化。
    结果:我们实施并试验了一种用于指南解释和处理的算法方法。由于这种解释,得出并可视化了特定于上下文的指南。我们的实现可以用作软件库,但也提供了代表性的状态转移接口。春天,卡蒙达,和Drools是实现的主要框架。使用可视化的演示工具的形成性可用性评估在临床医生中获得了很高的接受度。
    结论:新的指南处理和可视化概念被证明在技术上是可行的。该方法解决了基于指南的临床决策支持系统的已知问题。需要进一步研究以评估该方法在特定医疗用例中的适用性。
    BACKGROUND: Clinical decision support systems often adopt and operationalize existing clinical practice guidelines leading to higher guideline availability, increased guideline adherence, and data integration. Most of these systems use an internal state-based model of a clinical practice guideline to derive recommendations but do not provide the user with comprehensive insight into the model.
    OBJECTIVE: Here we present a novel approach based on dynamic guideline visualization that incorporates the individual patient\'s current treatment context.
    METHODS: We derived multiple requirements to be fulfilled by such an enhanced guideline visualization. Using business process and model notation as the representation format for computer-interpretable guidelines, a combination of graph-based representation and logical inferences is adopted for guideline processing. A context-specific guideline visualization is inferred using a business rules engine.
    RESULTS: We implemented and piloted an algorithmic approach for guideline interpretation and processing. As a result of this interpretation, a context-specific guideline is derived and visualized. Our implementation can be used as a software library but also provides a representational state transfer interface. Spring, Camunda, and Drools served as the main frameworks for implementation. A formative usability evaluation of a demonstrator tool that uses the visualization yielded high acceptance among clinicians.
    CONCLUSIONS: The novel guideline processing and visualization concept proved to be technically feasible. The approach addresses known problems of guideline-based clinical decision support systems. Further research is necessary to evaluate the applicability of the approach in specific medical use cases.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    学习健康系统(LHS)的一个关键方面是利用在护理交付期间生成的数据来告知临床护理。然而,利用观测数据的机构指南很少见,需要几个月的时间来创建,使目前的程序对于更紧急的情况来说不切实际,例如COVID-19大流行带来的情况。在无法获得随机对照试验证据的情况下,需要快速分析机构数据以推动指南创建。
    本文提供了机构指南创建中观测数据生成的当前状态的背景,并详细介绍了我们机构在创建新颖工作流程方面的经验,以(1)证明这种工作流程的价值,(2)展示一个现实世界的例子,(3)讨论遇到的困难和未来的方向。
    利用数据库专家的多学科团队,临床医生,和信息学家,我们创建了一个工作流程,用于在我们的临床数据仓库中识别临床需求并将其转换为可查询的格式,创建数据摘要,并将这些信息反馈到临床指南创建中。
    医院医学部门提出的临床问题在快速的时间框架内得到了回答,并为COVID-19患者的护理制定了机构指南。设置工作流的成本,回答问题,制作数据摘要需要大约300小时的努力和30万美元的美元。
    LHS的一个关键组成部分是能够从护理交付期间生成的数据中学习。文献中有罕见的例子,我们展示了一个这样的例子,以及理想的多学科团队组建和部署的想法。
    One key aspect of a learning health system (LHS) is utilizing data generated during care delivery to inform clinical care. However, institutional guidelines that utilize observational data are rare and require months to create, making current processes impractical for more urgent scenarios such as those posed by the COVID-19 pandemic. There exists a need to rapidly analyze institutional data to drive guideline creation where evidence from randomized control trials are unavailable.
    This article provides a background on the current state of observational data generation in institutional guideline creation and details our institution\'s experience in creating a novel workflow to (1) demonstrate the value of such a workflow, (2) demonstrate a real-world example, and (3) discuss difficulties encountered and future directions.
    Utilizing a multidisciplinary team of database specialists, clinicians, and informaticists, we created a workflow for identifying and translating a clinical need into a queryable format in our clinical data warehouse, creating data summaries and feeding this information back into clinical guideline creation.
    Clinical questions posed by the hospital medicine division were answered in a rapid time frame and informed creation of institutional guidelines for the care of patients with COVID-19. The cost of setting up a workflow, answering the questions, and producing data summaries required around 300 hours of effort and $300,000 USD.
    A key component of an LHS is the ability to learn from data generated during care delivery. There are rare examples in the literature and we demonstrate one such example along with proposed thoughts of ideal multidisciplinary team formation and deployment.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    随着电子健康记录(EHR)的使用增加并造成意外的负面后果,医学抄写员职业蓬勃发展,但它还没有得到监管。这项研究的目的是描述抄写工作流程,并确定抄写行业未来的威胁和机会。
    研究的第一阶段使用了人种学方法,包括在美国五个地点的多学科研究人员团队的访谈和观察。2019年4月,举行了为期两天的代表不同利益相关者观点的专家会议,讨论了实地考察的结果,并预测了医疗划线的未来。使用解释性内容分析方法来发现医学抄写员未来的威胁和机会。
    医疗抄写员行业面临的威胁与文档模型的变化有关,EHR可用性,不同的支付结构,在临床接触期间需要获取不同的数据,以及与划线模型相关的劳动力相关的变化。同时,未来的医疗记录机会包括将其角色扩展到包括工作流分析,担任EHR相关主题专家,并更有效地融入临床护理交付团队。专家认为,如果EHR可用性增加,对医学抄写员的需求可能会减少。此外,可以扩展抄写员角色,以允许抄写员记录更多或承担更多与信息学相关的任务。专家们还预计会增加使用替代的划线模型,比如远程抄写.
    确定了医疗划片的威胁和机会。许多专家认为,如果可以扩大抄写员的角色,以允许抄写员记录更多或从事更多的信息学活动,这将是有益的。随着COVID-19继续改变工作流程,随着远程抄写越来越受欢迎,随着医疗团队成员的确定,抄写员必须接受标准化培训。
    With the use of electronic health records (EHRs) increasing and causing unintended negative consequences, the medical scribe profession has burgeoned, but it has yet to be regulated. The purpose of this study was to describe scribe workflow as well as identify the threats and opportunities for the future of the scribe industry.
    The first phase of the study used ethnographic methods consisting of interviews and observations by a multi-disciplinary team of researchers at five United States sites. In April 2019, a two-day conference of experts representing different stakeholder perspectives was held to discuss the results from site visits and to predict the future of medical scribing. An interpretive content analysis approach was used to discover threats and opportunities for the future of medical scribes.
    Threats facing the medical scribe industry were related to changes in the documentation model, EHR usability, different payment structures, the need to acquire disparate data during clinical encounters, and workforce-related changes relevant to the scribing model. Simultaneously, opportunities for medical scribing in the future included extension of their role to include workflow analysis, acting as EHR-related subject-matter-experts, and becoming integrated more effectively into the clinical care delivery team. Experts thought that if EHR usability increases, the need for medical scribes might decrease. Additionally, the scribe role could be expanded to allow scribes to document more or take on more informatics-related tasks. The experts also anticipated an increased use of alternative models of scribing, like tele-scribing.
    Threats and opportunities for medical scribing were identified. Many experts thought that if the scribe role could be expanded to allow scribes to document more or take on more informatics activities, it would be beneficial. With COVID-19 continuing to change workflows, it is critical that medical scribes receive standardized training as tele-scribing continues to grow in popularity and new roles for scribes as medical team members are identified.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Sci-hub)

       PDF(Pubmed)

公众号