workflow

工作流
  • 文章类型: Journal Article
    本案例研究提出了一个迭代开发的过程,供临床信息学家识别,分析,并应对社区护理环境中与健康信息技术(HIT)相关的安全事件(该研究得到了CIHR卫生系统影响研究金计划的支持。我们还要感谢温哥华沿海卫生的宝贵贡献。).目标是在临床信息学团队中建立能力,将患者安全纳入他们的工作,并帮助他们识别和应对与HIT相关的安全事件。最终开发的与技术相关的安全事件分析过程包括三个关键组成部分:1)使用社会技术模型分析自愿报告的与HIT相关的安全事件的内部工作流程,2)安全拥挤,以扩大从经审查的事件中学到的知识,和3)随着时间的推移对所有事件进行累积分析,以识别和响应模式。快速识别和理解HIT安全问题的系统方法使信息学团队能够主动降低风险并防止伤害。
    This case study presents a process that was iteratively developed for clinical informaticians to identify, analyse, and respond to safety events related to health information technologies (HIT) in community care settings (This research was supported by the CIHR Health Systems Impact Fellowship Program. We would also like to thank Vancouver Coastal Health for their valuable contributions.). The goal was to build capacity within a clinical informatics team to integrate patient safety into their work and to help them recognize and respond to HIT-related safety events. The technology-related safety event analysis process that was ultimately developed included three key components: 1) an internal workflow to analyse voluntarily reported HIT-related safety events using a sociotechnical model, 2) safety huddles to amplify learnings from reviewed events, and 3) a cumulative analysis of all events over time to identify and respond to patterns. A systematic approach to quickly identify and understand HIT safety concerns enables informatics teams to proactively reduce risks and prevent harm.
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  • 文章类型: Journal Article
    背景:本病例报告强调了标准化和全数字化序贯治疗在复杂咬合康复病例中的重要性。为了充分解决患者的牙科需求,这种情况通常需要多学科干预,包括牙周治疗,牙髓治疗,前美学,植入物修复,假肢康复。完全数字化的工作流程(包括面部扫描仪,口内扫描仪,下颌运动跟踪系统,虚拟咬合器,和计算机辅助设计软件)简化了复杂的处理,增强工作流程的简单性,效率,可见性,和精度。
    方法:患者表现为上下假体咀嚼效率下降,前牙的美学外观令人不满意。体格检查和放射学评估后,这个复杂的咬合康复案例需要牙周治疗,前美学增强,植入物修复,和固定假肢康复。因此,采用了完全数字化的工作流程。全冠假体放置在牙齿13、23和34上;固定桥包含位置32至42,单个植入物冠放置在牙齿35和36上。为牙齿12至22和44至46构造植入物支撑的固定桥,并通过植入物固定在牙齿12、22、44和46处。所有确定的假体都是由氧化锆陶瓷制成的,因其耐用性和美学特性而选择。最后,具有令人满意的美学和功能特征的修复体就座,保护牙齿及其支撑结构。在治疗和随访期间,T扫描咬合分析系统用于连续监测和指导患者牙弓咬合分布的调整。18个月后,患者仍然对最终的修复感到满意。
    结论:本报告旨在帮助牙医了解和实施复杂咬合康复病例管理过程中的标准化和完全数字化工作流程;它还可以促进美学和功能特征的和谐融合。
    BACKGROUND: This case report highlights the importance of standardized and fully digital sequential treatment in complex occlusal rehabilitation cases. To fully resolve the patient\'s dental needs, such cases often require multidisciplinary interventions including periodontal therapy, endodontic treatment, anterior esthetics, implant restoration, and prosthetic rehabilitation. A fully digital workflow (including facial scanners, intraoral scanners, jaw motion tracking systems, virtual articulators, and computer-aided design software) streamlined the complex treatment, enhancing workflow simplicity, efficiency, visibility, and precision.
    METHODS: The patient presented with decreased chewing efficiency of the upper and lower prostheses, along with unsatisfactory esthetic appearance of the anterior teeth. After physical examination and radiological assessment, this complex occlusal rehabilitation case required periodontal therapy, anterior esthetic enhancement, implant restoration, and fixed prosthetic rehabilitation. Therefore, a fully digital workflow was adopted. Full-crown prostheses were placed on teeth 13, 23, and 34; a fixed bridge encompassed positions 32 to 42, and single implant crowns were placed on teeth 35 and 36. Implant-supported fixed bridges were constructed for teeth 12 to 22 and 44 to 46, anchored by implants at teeth 12, 22, 44, and 46. All definitive prostheses were fabricated from zirconia ceramics, chosen for their durability and esthetic characteristics. Finally, restorations with satisfactory esthetic and functional characteristics were seated, preserving the tooth and its supporting structures. During treatment and follow-up, the T-scan occlusal analysis system was utilized to continuously monitor and guide the adjustment of occlusal distribution across the patient\'s dental arches. After 18 months, the patient remains satisfied with the definitive restorations.
    CONCLUSIONS: This report is intended to help dentists understand and implement standardized and fully digital workflows during the management of complex occlusal rehabilitation cases; it may also facilitate harmonious integration of esthetic and functional characteristics.
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  • 文章类型: Journal Article
    目的:数字方案和生物活性材料可以减少并发症,提高牙齿自体移植(ATT)的成功率和存活率。这项前瞻性研究评估了在牙釉质基质衍生物(EMD)的辅助应用下,闭尖磨牙的全数字化自体移植方案的性能。
    方法:12例成年患者13颗无望磨牙,行闭合前尖第三磨牙自体移植。结果,包括成功率和存活率,临床,牙髓,射线照相,患者报告结果测量(PROMs),和数字图像评估,进行了为期两年的随访。
    结果:生存率和成功率分别为100%和91.2%,分别,没有进行性炎症或替代根吸收(强直),除了一颗牙齿表现出影像学分叉受累。与无希望的受体牙齿相比,在移植牙齿中观察到的探测深度显着减少了2.4±2.58mm,CAL增加了2.8±3.03mm。射线照相骨水平在整个研究期间保持稳定(-0.37±0.66mm),和数字图像评估显示,从基线到最后一次访视,牙槽沟宽度变化最小(-0.32~-0.7mm),牙龈边缘变化最小(-0.95~-1.27mm).PROM显示患者满意度很高。
    结论:在闭合尖尖第三磨牙中使用数字ATT方案并辅助使用EMD证明了有希望的短期高成功率和生存率。此外,这种类型的治疗充分保留了受体部位的牙槽脊的尺寸.
    OBJECTIVE: Digital protocols and bioactive materials may reduce complications and improve tooth autotransplantation (ATT) success and survival rates. This prospective study assesses the performance of a fully digital autotransplantation protocol of close-apex molars with the adjunctive application of Enamel Matrix Derivatives (EMD).
    METHODS: Twelve adult patients with 13 hopeless molar teeth were replaced with autotransplantation of closed apex third molars. Outcomes, including success and survival rates, clinical, endodontic, radiographic, patient-reported outcome measures (PROMs), and digital image assessments, were conducted over a two-year follow-up period.
    RESULTS: Survival and success rates were 100% and 91.2%, respectively, with no progressive inflammatory or replacement root resorption (ankylosis) except for one tooth presenting radiographic furcation involvement. A significant probing depth reduction of 2.4 ± 2.58 mm and CAL gains of 2.8 ± 3.03 mm were observed in transplanted teeth compared to the hopeless receptor teeth. Radiographic bone levels remained stable throughout the study period (-0.37 ± 0.66 mm), and digital image assessments showed minimal alveolar ridge width changes (-0.32 to -0.7 mm) and gingival margin changes (-0.95 to -1.27 mm) from baseline to last visit. PROMs indicated very high patient satisfaction.
    CONCLUSIONS: The use of a digital ATT protocol with adjunctive use of EMD in closed-apex third molars demonstrated promising short-term high success and survival rates. Additionally, this type of therapy adequately preserves the dimensions of the alveolar ridge in the receptor site.
    CONCLUSIONS: This is the first prospective clinical study examining the effect of a digital tooth autotransplantation protocol combined with the application of EMD. It demonstrates that this approach is an effective treatment for replacing hopeless teeth and also validates the digital assessment of ATT alveolar ridge preservation at the recipient site.
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  • 文章类型: Journal Article
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  • 文章类型: Journal Article
    目的是根据报告摘要评估AI生成的放射学报告的功效,病人友好,和建议,并评估报告质量和准确性的一致性表现,有助于放射学工作流程的进步。从我们的医院数据库中检索到总共685例脊柱MRI报告。人工智能生成的放射学报告以三种格式生成:(1)总结报告,(2)对患者友好的报告,(三)建议。在AI生成的报告中评估了人工幻觉的发生。两名放射科医生将原始报告作为标准参考进行了定性和定量评估。两名非医师评估者使用5点Likert量表评估了他们对原始和患者友好报告内容的理解。AI生成的放射学报告的评分是所有三种格式的总体高平均分数。原始报告的平均理解评分为2.71±0.73,而患者友好报告的评分显着增加至4.69±0.48(p<0.001)。有1.12%的人工幻觉和7.40%的潜在有害翻译。总之,使用生成AI助手生成这些报告的潜在好处包括提高报告质量,在放射学工作流程中更高的效率来生成摘要,以患者为中心的报告,和建议,走向以患者为中心的放射学。
    The purposes were to assess the efficacy of AI-generated radiology reports in terms of report summary, patient-friendliness, and recommendations and to evaluate the consistent performance of report quality and accuracy, contributing to the advancement of radiology workflow. Total 685 spine MRI reports were retrieved from our hospital database. AI-generated radiology reports were generated in three formats: (1) summary reports, (2) patient-friendly reports, and (3) recommendations. The occurrence of artificial hallucinations was evaluated in the AI-generated reports. Two radiologists conducted qualitative and quantitative assessments considering the original report as a standard reference. Two non-physician raters assessed their understanding of the content of original and patient-friendly reports using a 5-point Likert scale. The scoring of the AI-generated radiology reports were overall high average scores across all three formats. The average comprehension score for the original report was 2.71 ± 0.73, while the score for the patient-friendly reports significantly increased to 4.69 ± 0.48 (p < 0.001). There were 1.12% artificial hallucinations and 7.40% potentially harmful translations. In conclusion, the potential benefits of using generative AI assistants to generate these reports include improved report quality, greater efficiency in radiology workflow for producing summaries, patient-centered reports, and recommendations, and a move toward patient-centered radiology.
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  • 文章类型: Video-Audio Media
    视频可以帮助突出实时步骤,解剖和技术方面的情况下,可能难以传达单独的文本或静态图像。使用有计划的工作流进行编辑允许仅向观看者传输必要的信息,同时通过编辑过程来最大化效率。这个视频教程打破了手术视频编辑的基本技巧和指针,以简化工作流程。
    A video can help highlight the real-time steps, anatomy and the technical aspects of a case that may be difficult to convey with text or static images alone. Editing with a regimented workflow allows for the transmission of only essential information to the viewer while maximizing efficiency by going through the editing process. This video tutorial breaks down the fundamentals of surgical video editing with tips and pointers to simplify the workflow.
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  • 文章类型: Journal Article
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  • 文章类型: Journal Article
    科学工作流程通过集成以特定顺序执行的各种软件和工具来促进数据分析任务的自动化。要在工作流中实现透明度和可重用性,实施公平原则至关重要。这里,我们以代谢组学注释工作流(MAW)为例,描述了我们在代谢组学工作流实施FAIR原则的经验.MAW使用通用工作流语言(CWL)指定,允许在不同的工作流引擎上后续执行工作流。使用WorkflowHub上的CWL描述注册MAW。在WorkflowHub上的提交过程中,CWL描述用于使用工作流RO-Crate配置文件包装MAW,其中包括Bioschemas中的元数据。研究人员可以使用这种叙述性讨论作为指南,开始使用FAIR实践进行其生物信息学或化学信息学工作流程,同时纳入针对其研究领域的必要修订。
    Scientific workflows facilitate the automation of data analysis tasks by integrating various software and tools executed in a particular order. To enable transparency and reusability in workflows, it is essential to implement the FAIR principles. Here, we describe our experiences implementing the FAIR principles for metabolomics workflows using the Metabolome Annotation Workflow (MAW) as a case study. MAW is specified using the Common Workflow Language (CWL), allowing for the subsequent execution of the workflow on different workflow engines. MAW is registered using a CWL description on WorkflowHub. During the submission process on WorkflowHub, a CWL description is used for packaging MAW using the Workflow RO-Crate profile, which includes metadata in Bioschemas. Researchers can use this narrative discussion as a guideline to commence using FAIR practices for their bioinformatics or cheminformatics workflows while incorporating necessary amendments specific to their research area.
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  • 文章类型: Journal Article
    三维(3D)打印模型可以提高对颞下颌关节强直和假性强直导致闭合下颌锁定的病例的结构解剖变化的理解。它们在术前计划和术中指导中的应用已有报道,有助于这些外科手术的可预测性和成功,这可能相当复杂,尤其是小动物患者。3D工具和模型的使用和生产仍然具有挑战性,并且迄今为止仅限于具有高(经济和人力资源)资源的机构。本研究旨在提出使用开源软件简化的工作流程,以促进内部3D打印过程。为了说明这一点,回顾了3例颞下颌关节强直和1例假性强直,内部3D打印模型用于客户沟通和手术管理。3D模型从计算机断层扫描中分割出来,并通过立体光刻打印。它们被用来支持与客户的讨论(n=4),允许外科医生进行术前计划和实践(n=4)以及在手术过程中进行术中指导(n=2)。在一种情况下生产了手术切割引导件,以提高精度并更准确地定义截骨线。必须考虑建立内部3D打印生产所需的初始时间和财务投资。特别是当需要生产生物相容性工具时,如手术切割指南。然而,高效和简化的工作流程鼓励这项技术的集成,通过加速印刷过程和减少陡峭的学习曲线,而开源软件增强了对这些资源的可访问性。
    Three-dimensional (3D) printed models can improve the understanding of the structural anatomic changes in cases of temporomandibular joint ankylosis and pseudoankylosis leading to closed jaw locking. Their use in pre-surgical planning and intraoperative guidance has been reported, contributing to the predictability and success of these surgery procedures, which can be quite complex, especially in small animal patients. The use and production of 3D tools and models remain challenging and are so far limited to institutions with high (economical and human) resources. This study aims to propose simplified workflows using open-source software to facilitate an in-house 3D printing process. To illustrate this, three cases of temporomandibular joint ankylosis and one of pseudoankylosis were reviewed, where in-house 3D printed models were used for client communication and surgical management. The 3D models were segmented from computed tomography and printed via stereolithography. They were used to support discussion with clients (n = 4), to allow surgeons to pre-surgical plan and practice (n = 4) and for intraoperative guidance during surgery (n = 2). Surgical cutting guides were produced in one case to improve precision and define more accurately osteotomy lines. It is essential to consider the initial time and financial investment required for establishing an in-house 3D printing production, particularly when there is a need to produce biocompatible tools, such as surgical cutting guides. However, efficient and streamlined workflows encourage the integration of this technology, by accelerating the printing process and reducing the steep learning curves, while open-source software enhances accessibility to these resources.
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  • 文章类型: Journal Article
    考虑配体针对受体的热力学和动力学结合数据的基于结构的药物设计流程将能够进行改进的药物分子的计算设计。对于未解析的GPCR-配体复合物,需要测试可以将热力学和动力学结合数据与α-折叠(AF)衍生的或其他同源模型以及GPCR同源物中相关配体的实验解析结合模式相结合的工作流程。这里,作为测试用例,我们研究了一组与结构上未分辨的G蛋白偶联受体(GPCR)结合的配体,无活性的人腺苷A3受体(hA3R)。我们测试了三个可用的同源性模型,其中两个是从hA1R或hA2AR的实验结构中生成的,一个模型是多态α折叠2(AF2)衍生的模型。我们将化学计算与热力学积分以及分子动力学(TI/MD)模拟相结合,以计算实验相对结合自由能和停留时间(τ)-随机加速MD(τ-RAMD)模拟,以计算相对停留时间(RT)拮抗剂。当TI/MD计算产生时,对于三个同源模型,良好的皮尔逊相关系数,相应地,r=0.74、0.62和0.67,平均无符号误差(mue)值为0.94、1.31和0.81kcalmol-1,τ-RAMD方法显示前两个模型的r=0.92和0.52,但未能为多状态AF2衍生模型产生准确的结果。随后通过重新定位位于细胞外环2(EL2)的R1735.34的侧链来优化AF2衍生模型,从而阻断配体的解结合,计算模型显示,动力学数据的r=0.84,热力学数据的性能得到改善(r=0.81,mue=0.56kcalmol-1)。总的来说,在使用基于物理的工具改进多状态AF2模型之后,我们能够显示预测和实验配体相对停留时间和亲和力之间的强相关性,达到与实验结构相当的精度水平。使用的计算工作流程可以应用于其他受体,有助于在同一系列中对候选药物进行排名,并能够优先考虑具有更强结合亲和力和更长停留时间的线索。
    A structure-based drug design pipeline that considers both thermodynamic and kinetic binding data of ligands against a receptor will enable the computational design of improved drug molecules. For unresolved GPCR-ligand complexes, a workflow that can apply both thermodynamic and kinetic binding data in combination with alpha-fold (AF)-derived or other homology models and experimentally resolved binding modes of relevant ligands in GPCR-homologs needs to be tested. Here, as test case, we studied a congeneric set of ligands that bind to a structurally unresolved G protein-coupled receptor (GPCR), the inactive human adenosine A3 receptor (hA3R). We tested three available homology models from which two have been generated from experimental structures of hA1R or hA2AR and one model was a multistate alphafold 2 (AF2)-derived model. We applied alchemical calculations with thermodynamic integration coupled with molecular dynamics (TI/MD) simulations to calculate the experimental relative binding free energies and residence time (τ)-random accelerated MD (τ-RAMD) simulations to calculate the relative residence times (RTs) for antagonists. While the TI/MD calculations produced, for the three homology models, good Pearson correlation coefficients, correspondingly, r = 0.74, 0.62, and 0.67 and mean unsigned error (mue) values of 0.94, 1.31, and 0.81 kcal mol-1, the τ-RAMD method showed r = 0.92 and 0.52 for the first two models but failed to produce accurate results for the multistate AF2-derived model. With subsequent optimization of the AF2-derived model by reorientation of the side chain of R1735.34 located in the extracellular loop 2 (EL2) that blocked ligand\'s unbinding, the computational model showed r = 0.84 for kinetic data and improved performance for thermodynamic data (r = 0.81, mue = 0.56 kcal mol-1). Overall, after refining the multistate AF2 model with physics-based tools, we were able to show a strong correlation between predicted and experimental ligand relative residence times and affinities, achieving a level of accuracy comparable to an experimental structure. The computational workflow used can be applied to other receptors, helping to rank candidate drugs in a congeneric series and enabling the prioritization of leads with stronger binding affinities and longer residence times.
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