computational modelling

计算建模
  • 文章类型: Journal Article
    目的:精神分裂症是一种复杂的神经发育性疾病,与大脑皮层和神经网络的不同缺陷有关,导致脑电波不规则。针对这种不规则性提出了各种神经病理学假设,我们打算在本计算研究中进行检查。方法:我们使用基于细胞自动机的神经元群体的数学模型来检验关于精神分裂症神经病理学的两个假设:第一,降低神经元刺激阈值以增加神经元兴奋性;其次,增加兴奋性神经元的百分比和减少抑制性神经元的百分比,以增加神经元群体中的兴奋与抑制率。然后,我们使用Lempel-Ziv复杂性度量将两种情况下模型产生的输出信号的复杂性与真实健康的静息状态脑电图(EEG)信号进行比较,并观察这些变化是否改变(增加或减少)神经元种群动态的复杂性.结果:通过降低神经元刺激阈值(即,第一个假设),没有观察到网络复杂性的模式和幅度的显著变化,模型复杂度与真实脑电信号的复杂度非常相似(P>0.05)。然而,增加激发与抑制率(即,第二个假设)导致设计网络的复杂性模式发生显著变化(P<0.05)。更有趣的是,在这种情况下,与真实健康EEG(P=0.002)以及未改变条件(P=0.028)和第一个假设(P=0.001)的模型输出相比,模型输出信号的复杂性显着增加。结论:我们的计算模型表明,神经网络中兴奋与抑制率的失衡可能是异常神经元放电模式的根源,因此是精神分裂症脑电活动复杂性增加的原因。
    Objective: Schizophrenia is a complex neurodevelopmental illness that is associated with different deficits in the cerebral cortex and neural networks, resulting in irregularity of brain waves. Various neuropathological hypotheses have been proposed for this irregularity that we intend to examine in this computational study. Method : We used a mathematical model of a neuronal population based on cellular automata to examine two hypotheses about the neuropathology of schizophrenia: first, reducing neuronal stimulation thresholds to increase neuronal excitability; and second, increasing the percentage of excitatory neurons and decreasing the percentage of inhibitory neurons to increase the excitation to inhibition ratio in the neuronal population. Then, we compare the complexity of the output signals produced by the model in both cases with real healthy resting-state electroencephalogram (EEG) signals using the Lempel-Ziv complexity measure and see if these changes alter (increase or decrease) the complexity of the neuronal population dynamics. Results: By lowering the neuronal stimulation threshold (i.e., the first hypothesis), no significant change in the pattern and amplitude of the network complexity was observed, and the model complexity was very similar to the complexity of real EEG signals (P > 0.05). However, increasing the excitation to inhibition ratio (i.e., the second hypothesis) led to significant changes in the complexity pattern of the designed network (P < 0.05). More interestingly, in this case, the complexity of the output signals of the model increased significantly compared to real healthy EEGs (P = 0.002) and the model output of the unchanged condition (P = 0.028) and the first hypothesis (P = 0.001). Conclusion: Our computational model suggests that imbalances in the excitation to inhibition ratio in the neural network are probably the source of abnormal neuronal firing patterns and thus the cause of increased complexity of brain electrical activity in schizophrenia.
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  • 文章类型: Journal Article
    目的:标准的植入式心律转复除颤器(ICD)发生器(can)放置在左胸区;但是,在某些情况下,可能需要右侧罐,其可由于次优电击向量而增加除颤阈值(DFT)。我们旨在定量评估是否可以通过右心室(RV)电击线圈的替代定位或在上腔静脉(SVC)和冠状窦(CS)中添加线圈来减轻右侧罐配置的DFT的潜在增加。
    结果:一组CT衍生的躯干模型用于评估带有右侧罐的ICD配置的DFT和右心室电击线圈的替代定位。评估SVC和CS中额外线圈的功效变化。与左侧罐相比,带有根尖RV电击线圈的右侧罐的DFT显着增加[19.5(16.4,27.1)J与13.3(11.7,19.9)J,P<0.001]。使用右侧罐[26.7(18.1,36.1)Jvs.19.5(16.4,27.1)J,P<0.001],但不是左侧罐[12.1(8.1,17.6)Jvs.13.3(11.7,19.9)J,P=0.099)。通过同时添加SVC和CS线圈,具有根尖或间隔线圈的右侧罐的除颤阈值降低最大[19.5(16.4,27.1)Jvs.6.6(3.9,9.9)J,P<0.001,26.7(18.1,36.1)J与12.1(5.7,13.5)J,P<0.001]。
    结论:右侧,与左侧相比,可以定位导致DFT增加50%。对于右侧罐,根尖电击线圈定位产生比间隔位置更低的DFT。可以通过利用SVC和CS中的附加线圈来减轻升高的右侧罐DFT。
    The standard implantable cardioverter defibrillator (ICD) generator (can) is placed in the left pectoral area; however, in certain circumstances, right-sided cans may be required which may increase defibrillation threshold (DFT) due to suboptimal shock vectors. We aim to quantitatively assess whether the potential increase in DFT of right-sided can configurations may be mitigated by alternate positioning of the right ventricular (RV) shocking coil or adding coils in the superior vena cava (SVC) and coronary sinus (CS).
    A cohort of CT-derived torso models was used to assess DFT of ICD configurations with right-sided cans and alternate positioning of RV shock coils. Efficacy changes with additional coils in the SVC and CS were evaluated. A right-sided can with an apical RV shock coil significantly increased DFT compared to a left-sided can [19.5 (16.4, 27.1) J vs. 13.3 (11.7, 19.9) J, P < 0.001]. Septal positioning of the RV coil led to a further DFT increase when using a right-sided can [26.7 (18.1, 36.1) J vs. 19.5 (16.4, 27.1) J, P < 0.001], but not a left-sided can [12.1 (8.1, 17.6) J vs. 13.3 (11.7, 19.9) J, P = 0.099). Defibrillation threshold of a right-sided can with apical or septal coil was reduced the most by adding both SVC and CS coils [19.5 (16.4, 27.1) J vs. 6.6 (3.9, 9.9) J, P < 0.001, and 26.7 (18.1, 36.1) J vs. 12.1 (5.7, 13.5) J, P < 0.001].
    Right-sided, compared to left-sided, can positioning results in a 50% increase in DFT. For right-sided cans, apical shock coil positioning produces a lower DFT than septal positions. Elevated right-sided can DFTs may be mitigated by utilizing additional coils in SVC and CS.
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  • 文章类型: Journal Article
    我们的研究方法来自三个不同的需求:一个,成像研究已经存在于筒仓和研究器官中,但不存在于器官系统中;二,我们对儿科结构和功能的理解存在差距;三,新西兰缺乏代表性数据。我们的研究旨在部分解决这些问题,通过磁共振成像的组合,先进的图像处理算法和计算建模。我们的研究表明,有必要采取器官系统方法并扫描同一孩子的多个器官。我们已经测试了一种成像协议,以对儿童造成最小的干扰,并使用成像数据展示了最先进的图像处理和个性化的计算模型。我们的成像方案跨越大脑,肺,心,肌肉,骨头,腹部和血管系统。我们最初的一组结果证明了在一个数据集上针对儿童的测量。这项工作是新颖而有趣的,因为我们已经运行了多个计算生理学工作流程来生成个性化的计算模型。我们提出的工作是实现成像和建模整合的第一步,以改善我们对儿科健康和疾病中人体的理解。
    Our study methodology is motivated from three disparate needs: one, imaging studies have existed in silo and study organs but not across organ systems; two, there are gaps in our understanding of paediatric structure and function; three, lack of representative data in New Zealand. Our research aims to address these issues in part, through the combination of magnetic resonance imaging, advanced image processing algorithms and computational modelling. Our study demonstrated the need to take an organ-system approach and scan multiple organs on the same child. We have pilot tested an imaging protocol to be minimally disruptive to the children and demonstrated state-of-the-art image processing and personalized computational models using the imaging data. Our imaging protocol spans brain, lungs, heart, muscle, bones, abdominal and vascular systems. Our initial set of results demonstrated child-specific measurements on one dataset. This work is novel and interesting as we have run multiple computational physiology workflows to generate personalized computational models. Our proposed work is the first step towards achieving the integration of imaging and modelling improving our understanding of the human body in paediatric health and disease.
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  • 文章类型: Randomized Controlled Trial
    暂无摘要。
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  • 文章类型: Journal Article
    Due to COVID-19, the Dutch breast cancer screening program was interrupted for three months with uncertain long-term effects. The aim of this study was to estimate the long-term impact of this interruption on delay in detection, tumour size of screen-detected breast cancers, and interval cancer rate. After validation, the micro-simulation model SiMRiSc was used to calculate the effects of interruption of the breast cancer screening program for three months and for hypothetical interruptions of six and twelve months. A scenario without interruption was used as reference. Outcomes considered were tumour size of screen-detected breast cancers and interval cancer rate. Women of 55-59 and 60-64 years old at time of interruption were considered. Uncertainties were estimated using a sensitivity analysis. The three-month interruption had no clinically relevant long-term effect on the tumour size of screen-detected breast cancers. A 19% increase in interval cancer rate was found between last screening before and first screening after interruption compared to no interruption. Hypothetical interruptions of six and twelve months resulted in larger increases in interval cancer rate of 38% and 78% between last screening before and first screening after interruption, respectively, and an increase in middle-sized tumours in first screening after interruption of 26% and 47%, respectively. In conclusion, the interruption of the Dutch screening program is not expected to result in a long-term delay in detection or clinically relevant change in tumour size of screen-detected cancers, but only affects the interval cancer rate between last screening before and first screening after interruption.
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  • 文章类型: Journal Article
    相当比例的心力衰竭患者具有保留的左心室(LV)射血分数(HFpEF)。这种情况具有高的发病率和死亡率负担,并且具有有限的治疗选择。左心室压力超负荷导致心肌胶原含量增加,导致左心室硬化,有助于心力衰竭患者的发展,左心室射血分数得到保留。尽管近年来已经开发了一些心力衰竭患者的左心室射血分数模型来帮助研究机械改变,没有人调查了该疾病的不同表型,并评估了材料特性的变化。在这项研究中,两只类似的健康猪经历了进行性和长时间的压力超负荷,以诱发舒张性心力衰竭的特征,提供心力衰竭患者的临床前模型,左心室射血分数得到保留。在诱导前后记录心脏磁共振成像(cMRI)扫描和心内压。在健康和疾病状态下,通过活心猪模型的网格变形开发了相应的有限元(FE)心脏模型。材料特性是通过校准其被动和主动行为得出的。当比较感应前后的几何形状时,被动行为的变化主要是各向同性的。心肌增厚允许被动特性的稳定转变,同时保持组织的不可压缩性。这项研究强调了肥大作为初始代偿反应的重要性,也可能为评估疾病严重程度铺平道路。
    A substantial proportion of heart failure patients have a preserved left ventricular (LV) ejection fraction (HFpEF). This condition carries a high burden of morbidity and mortality and has limited therapeutic options. left ventricular pressure overload leads to an increase in myocardial collagen content, causing left ventricular stiffening that contributes to the development of heart failure patients have a preserved left ventricular ejection fraction. Although several heart failure patients have a preserved left ventricular ejection fraction models have been developed in recent years to aid the investigation of mechanical alterations, none has investigated different phenotypes of the disease and evaluated the alterations in material properties. In this study, two similar healthy swine were subjected to progressive and prolonged pressure overload to induce diastolic heart failure characteristics, providing a preclinical model of heart failure patients have a preserved left ventricular ejection fraction. Cardiac magnetic resonance imaging (cMRI) scans and intracardiac pressures were recorded before and after induction. In both healthy and disease states, a corresponding finite element (FE) cardiac model was developed via mesh morphing of the Living Heart Porcine model. The material properties were derived by calibrating to its passive and active behavior. The change in the passive behavior was predominantly isotropic when comparing the geometries before and after induction. Myocardial thickening allowed for a steady transition in the passive properties while maintaining tissue incompressibility. This study highlights the importance of hypertrophy as an initial compensatory response and might also pave the way for assessing disease severity.
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  • 文章类型: Journal Article
    Objective.最近开发的磁电纳米粒子(MENP)为实现不同的生物医学应用提供了潜在的工具。它们可以用来克服传统神经刺激技术带来的内在限制,即基于电极的技术的侵入性,有限的空间分辨率,以及磁刺激的稀缺效率。方法。通过使用计算电磁技术,我们模拟了最近设计的生物相容性MENP注射的行为,集群的形状,在高度详细的解剖头部模型的特定皮质目标中。将由每个组织中的MENP簇诱导的电场的分布和组织穿透与由传统的经颅磁刺激(TMS)线圈诱导的分布进行比较,用于定位在高度详细的解剖头部模型的左前额叶皮层(PFC)上的非侵入性脑刺激。主要结果。MENP簇可以在所有感兴趣的脑组织中诱导高度聚焦的电场,其幅度接近神经激活阈值,以治疗大多数神经精神疾病。相反,TMS线圈可以在广泛的PFC上感应出几十Vm-1的电场,但即使是小体积的皮质下和深层组织,它们也不可能有效地刺激。意义。我们的数值结果表明,使用MENP进行脑刺激可能会导致未来对神经性疾病的精确治疗。其中特定皮质和皮质下组织和网络的电活动受损被认为起着至关重要的作用。
    Objective.Recently developed magnetoelectric nanoparticles (MENPs) provide a potential tool to enable different biomedical applications. They could be used to overcome the intrinsic constraints posed by traditional neurostimulation techniques, namely the invasiveness of electrodes-based techniques, the limited spatial resolution, and the scarce efficiency of magnetic stimulation.Approach.By using computational electromagnetic techniques, we modelled the behaviour of recently designed biocompatible MENPs injected, in the shape of clusters, in specific cortical targets of a highly detailed anatomical head model. The distributions and the tissue penetration of the electric fields induced by MENPs clusters in each tissue will be compared to the distributions induced by traditional transcranial magnetic stimulation (TMS) coils for non-invasive brain stimulation positioned on the left prefrontal cortex (PFC) of a highly detailed anatomical head model.Main results.MENPs clusters can induce highly focused electric fields with amplitude close to the neural activation threshold in all the brain tissues of interest for the treatment of most neuropsychiatric disorders. Conversely, TMS coils can induce electric fields of several tens of V m-1over a broad volume of the PFC, but they are unlikely able to efficiently stimulate even small volumes of subcortical and deep tissues.Significance.Our numerical results suggest that the use of MENPs for brain stimulation may potentially led to a future pinpoint treatment of neuropshychiatric disorders, in which an impairment of electric activity of specific cortical and subcortical tissues and networks has been assumed to play a crucial role.
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  • 文章类型: Journal Article
    早期COVID-19肺炎的最佳呼吸支持存在争议,目前尚不清楚。使用计算建模,我们通过评估常规氧疗(COT)的影响来检查早期COVID-19是否会加剧肺损伤,高流量鼻氧疗法(HFNOT),持续气道正压通气(CPAP),无创通气(NIV)。
    使用已建立的多室心肺模拟器,我们首先在120名自发呼吸患者中,在固定的FiO2(0.6)下模拟COT,并在30分钟内增加呼吸努力,在启动HFNOT之前,CPAP,或NIV。然后在30分钟的间隔内逐渐减少呼吸努力。氧合,呼吸努力,和肺应力/应变定量。在同一队列中也模拟了肺保护性机械通气。
    HFNOT,CPAP,与常规治疗相比,NIV改善了氧合,但最初也增加了总的肺应力和应变。CPAP改善氧合可减少呼吸努力,但CPAP>5cmH2O时肺应力/应变仍升高。随着呼吸努力的减少,HFNOT维持更好的氧合和减少总的肺应力,肺总应变没有增加。与10cmH2OPEEP相比,NIV中的4cmH2OPEEP降低了总的肺应力,但是即使呼吸努力较少,高的总肺脏仍然存在。肺保护性机械通气改善氧合,同时减少肺损伤。
    在早期COVID-19肺炎患者中,无创通气支持无法减少呼吸努力可能会加剧肺损伤。HFNOT减少肺应变并实现与CPAP/NIV相似的氧合。对于呼吸努力较高的患者,有创机械通气的伤害可能小于无创支持。
    Optimal respiratory support in early COVID-19 pneumonia is controversial and remains unclear. Using computational modelling, we examined whether lung injury might be exacerbated in early COVID-19 by assessing the impact of conventional oxygen therapy (COT), high-flow nasal oxygen therapy (HFNOT), continuous positive airway pressure (CPAP), and noninvasive ventilation (NIV).
    Using an established multi-compartmental cardiopulmonary simulator, we first modelled COT at a fixed FiO2 (0.6) with elevated respiratory effort for 30 min in 120 spontaneously breathing patients, before initiating HFNOT, CPAP, or NIV. Respiratory effort was then reduced progressively over 30-min intervals. Oxygenation, respiratory effort, and lung stress/strain were quantified. Lung-protective mechanical ventilation was also simulated in the same cohort.
    HFNOT, CPAP, and NIV improved oxygenation compared with conventional therapy, but also initially increased total lung stress and strain. Improved oxygenation with CPAP reduced respiratory effort but lung stress/strain remained elevated for CPAP >5 cm H2O. With reduced respiratory effort, HFNOT maintained better oxygenation and reduced total lung stress, with no increase in total lung strain. Compared with 10 cm H2O PEEP, 4 cm H2O PEEP in NIV reduced total lung stress, but high total lung strain persisted even with less respiratory effort. Lung-protective mechanical ventilation improved oxygenation while minimising lung injury.
    The failure of noninvasive ventilatory support to reduce respiratory effort may exacerbate pulmonary injury in patients with early COVID-19 pneumonia. HFNOT reduces lung strain and achieves similar oxygenation to CPAP/NIV. Invasive mechanical ventilation may be less injurious than noninvasive support in patients with high respiratory effort.
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  • 文章类型: Journal Article
    皮质扩散抑制(CSD)是脑组织明显去极化的波,伴随着离子浓度和细胞肿胀的实质性变化。这里,我们验证了电势建模的计算框架,离子运动,CSD期间脑组织细胞肿胀。我们考虑代表野生型(WT)或敲除/敲除小鼠的不同模型变化,并将数值结果与一系列实验研究的报告进行系统比较。我们发现几个CSD标志的数据是通过计算获得的,包括波的传播速度,直流换档持续时间,细胞外K浓度的峰值以及细胞外空间(ECS)的明显收缩与先前通过实验观察到的结果完全一致。Further,我们评估关键模型参数,包括细胞扩散率,结构比率,膜水和/或K+渗透率影响CSD特性集。
    Cortical spreading depression (CSD) is a wave of pronounced depolarization of brain tissue accompanied by substantial shifts in ionic concentrations and cellular swelling. Here, we validate a computational framework for modeling electrical potentials, ionic movement, and cellular swelling in brain tissue during CSD. We consider different model variations representing wild-type (WT) or knock-out/knock-down mice and systematically compare the numerical results with reports from a selection of experimental studies. We find that the data for several CSD hallmarks obtained computationally, including wave propagation speed, direct current shift duration, peak in extracellular K+ concentration as well as a pronounced shrinkage of extracellular space (ECS) are well in line with what has previously been observed experimentally. Further, we assess how key model parameters including cellular diffusivity, structural ratios, membrane water and/or K+ permeabilities affect the set of CSD characteristics.
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  • 文章类型: Journal Article
    青春期是物质使用出现的高峰期,这可能导致长期的社会心理,职业和人际并发症。持续的大规模,纵向,财团倡议,例如青少年大脑和认知发育(ABCD)研究,提供了前所未有的机会,可以在功能良好的样本中阐明有问题的药物使用的关键风险因素,并检查风险因素的变化如何与随时间的症状相关。延迟折扣已被提议作为早期物质使用开始和其他形式的精神病理学的推定风险标记。然而,其他因素(例如,社会经济地位和认知能力)影响青少年的折扣行为尚未得到很好的确立。本研究利用ABCD研究(n=11045)的数据来评估核心人口统计学和家族变量之间的关联,以及在重大精神病理学发作之前使用双曲线折现率(k)进行青年手术的延迟折现。模型估计揭示了个体差异因素的显著影响(例如,性别和社会经济地位)和酒精风险状况(基于家族史)的延迟折扣。在比较母体药物问题或产前药物暴露的存在时,在主要样本中未观察到显着差异。这些影响将需要在以后的ABCD波中复制。尽管如此,这些结果为延迟折扣作为有问题饮酒的潜在风险标记提供了支持,并证明了关键人口统计学变量与青少年折扣行为之间的关系.Further,这些结果提供了一个经验基线,从该基线可以跟踪延迟折扣和物质使用的发展轨迹在以后的ABCD波。
    Adolescence is the peak period for the emergence of substance use, which can lead to long-term psychosocial, occupational and interpersonal complications. Ongoing large-scale, longitudinal, consortium initiatives, such as the Adolescent Brain and Cognitive Development (ABCD) study, offer unprecedented opportunities to elucidate key risk factors for problematic substance use in a well-powered sample and to examine how changes in risk factors relate to symptoms across time. Delay discounting has been proposed as a putative risk marker for early substance-use initiation and other forms of psychopathology. However, the extent to which other factors (e.g., socio-economic status and cognitive ability) influence discounting behaviour in young adolescents is not well established. The present study leverages data from the ABCD study (n = 11 045) to assess associations between core demographic and familial variables and delay discounting in youth-operationalized using hyperbolic discounting rates (k)-before the onset of significant psychopathology. Model estimates revealed significant effects of individual difference factors (e.g., sex and socio-economic status) and alcohol risk status (based on family history) on delay discounting. No significant differences were observed in the primary sample when comparing the presence of parent drug problems or prenatal drug exposures. These effects will require replication in later waves of ABCD. Nonetheless, these results provide support for delay discounting as a potential risk marker for problematic alcohol use and demonstrate a relationship between key demographic variables and adolescent discounting behaviour. Further, these results provide an empirical baseline from which developmental trajectories of delay discounting and substance use may be tracked throughout future waves of ABCD.
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