antimicrobial susceptibility testing

抗菌药物敏感性试验
  • 文章类型: Journal Article
    氨曲南与头孢他啶/阿维巴坦的组合被认为是治疗由产生金属β-内酰胺酶(MBL)的分离株引起的感染的潜在治疗方法。在这项研究中,通过两种检测体积(5-和2-mL肉汤)的肉汤圆盘洗脱(BDE)方法测定了氨曲南与阿维巴坦对204例产碳青霉烯酶肠杆菌的体外抗菌活性,以肉汤微量稀释(BMD)方法为参考。对于BDE-5mL测试,ATM+CZA-lo管(氨曲南/头孢他啶/阿维巴坦:6/6/4mg/L)的绝对一致性(CA)为99.5%,0.5%的主要误差(ME)和0%的非常主要误差(VME);2ATMCZA-lo管的CA(12/6/4mg/L)为100%,没有我和VME。对于BDE-2mL测试,ATM+2CZA-hi管(15/10/4mg/L)的CA为98.5%,含0%ME和37.5%VME;2ATM+2CZA-hi管(30/10/4mg/L)的CA为97.1%,0%ME和75%VME。BDE-5毫升试验是临床微生物实验室确定氨曲南与阿维巴坦对肠杆菌的抗菌敏感性的经济实用方法,特别是2ATM+CZA-lo管,最终浓度为12/6/4mg/L的氨曲南/头孢他啶/阿维巴坦。
    目的:由产生金属β-内酰胺酶(MBL)的肠杆菌引起的感染在世界范围内越来越多的报道,是临床感染治疗的重大挑战。MBL擅长水解几乎所有传统的β-内酰胺抗生素,除了氨曲南,传统或新型β-内酰胺酶抑制剂不能抑制酶活性。好消息是,氨曲南与头孢他啶/阿维巴坦的组合已被证明是治疗与产生MBL的分离株相关的感染的潜在治疗方法之一。肉汤微量稀释(BMD)法被推荐作为其准确性的参考方法,但是在大多数常规实验室中执行它太复杂了。找到一个更方便的,实用,在临床微生物实验室中准确检测氨曲南/阿维巴坦的药敏方法是非常必要的。这里,我们评估了肉汤圆盘洗脱(BDE)方法对氨曲南与头孢他啶/阿维巴坦联合使用对肠杆菌分离物的性能,以BMD为参考。
    The combination of aztreonam with ceftazidime/avibactam is considered a potential therapeutic approach for the treatment of infections caused by metallo-β-lactamase (MBL)-producing isolates. In this study, in vitro antibacterial activity of aztreonam with avibactam against 204 carbapenemase-producing Enterobacterales was determined by broth disk elution (BDE) method of two detection volumes (5- and 2-mL broth), with broth microdilution (BMD) method as a reference. For the BDE-5mL test, the categorical agreement (CA) of ATM+CZA-lo tube (aztreonam/ceftazidime/avibactam: 6/6/4 mg/L) was 99.5%, with 0.5% major error (ME) and 0% very major error (VME); the CA of 2ATM+CZA-lo tube (12/6/4 mg/L) was 100%, with no ME and VME. For the BDE-2mL test, the CA of ATM+2CZA-hi tube (15/10/4 mg/L) was 98.5%, with 0% ME and 37.5% VME; the CA of 2ATM+2CZA-hi tube (30/10/4 mg/L) was 97.1%, with 0% ME and 75% VME. The BDE-5 mL test is an economical and practical method for clinical microbiology laboratories to determine the antibacterial susceptibility of aztreonam with avibactam against Enterobacterales, especially the 2ATM+CZA-lo tube with a final concentration of 12/6/4 mg/L of aztreonam/ceftazidime/avibactam.
    OBJECTIVE: Infections caused by metallo-β-lactamase (MBL)-producing Enterobacterales are increasingly reported worldwide, and it is a significant challenge for clinical infection treatment. MBLs are adept at hydrolyzing almost all traditional β-lactam antibiotics except aztreonam, and the enzyme activity cannot be inhibited by traditional or novel β-lactamase inhibitors. The good thing is that the combination of aztreonam with ceftazidime/avibactam has been proven to be one of the potential therapeutic approaches for treating infections related with MBL-producing isolates. Broth microdilution (BMD) method is recommended as a reference method for its accuracy, but it is too complex to perform in most routine laboratories. Finding a more convenient, practical, and accurate susceptibility testing method for aztreonam/avibactam in clinical microbiology laboratories is very necessary. Here, we evaluated the performance of broth disk elution (BDE) method for aztreonam in combination with ceftazidime/avibactam against Enterobacterales isolates, with BMD as a reference.
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  • 文章类型: Journal Article
    根据与所用技术相关的所有抗微生物剂的最低抑制浓度(MIC),提供兽医学中艰难梭菌抗微生物耐药性(AMR)数据的全面表征。
    根据范围审查的系统评价和荟萃分析首选报告项目(PRISMA)扩展范围审查(PRISMA-ScR)及其相关清单进行系统范围审查。目的是以总结和分析的格式提供证据的综合。为此,咨询了三个科学数据库:Scopus,PubMed,和WebofScience,直到2021年12月。随后,所有确定的文献都按照既定的研究标准进行筛选和分类,以后续评估为目标。
    对各种动物和相关来源的兽药中艰难梭菌抗菌素耐药性(AMR)的研究进行了全面分析。分析包括使用E测试提供抗菌药物敏感性试验数据的研究,琼脂稀释,或肉汤微量稀释技术。提取的数据包括最小抑制浓度(MIC)值和综合表征分析。
    在科学数据库中确定了总共1582项研究,其中只有80人接受了分析。兽医学中关于艰难梭菌抗菌素耐药性(AMR)的研究在欧洲和北美最为丰富。大多数分离株来自生产动物(55%)和宠物(15%),猪,马,牛是最常被研究的物种。所测试的药物的最低抑制浓度(MIC)和由此产生的推定的抗微生物耐药性在动物物种和分离来源之间表现出相当大的多样性。此外,已经在动物菌株的基因和基因组水平上进行了AMR表征。E-test是最常用的抗微生物药敏试验(AST)方法。此外,发现解释中等收入国家的断点高度异质,并且无论出版物的地理来源如何,都经常观察到。
    发现抗菌素敏感性测试技术和结果是多种多样的。没有证据表明在任何动物物种中具有唯一的抗微生物耐药性模式。尽管多年来收集了表型和基因组数据,需要进一步的跨学科研究。我们的发现强调了国际合作以建立艰难梭菌抗菌药物敏感性测试(AST)方法和报告的统一标准的必要性。这种合作将促进“一个健康”的监测和控制方法,这是至关重要的。
    UNASSIGNED: To provide a comprehensive characterization of Clostridioides difficile antimicrobial resistance (AMR) data in veterinary medicine based on the minimum inhibitory concentrations (MICs) of all antimicrobial agents tested in relation to the techniques used.
    UNASSIGNED: A systematic scoping review was conducted in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) extension for scoping reviews (PRISMA-ScR) and its associated checklist. The objective was to provide a synthesis of the evidence in a summarized and analyzed format.To this end, three scientific databases were consulted: Scopus, PubMed, and Web of Science, up until December 2021. Subsequently, all identified literature was subjected to screening and classification in accordance with the established study criteria, with the objective of subsequent evaluation.
    UNASSIGNED: A comprehensive analysis was conducted on studies regarding Clostridioides difficile antimicrobial resistance (AMR) in veterinary medicine across various animal species and related sources. The analysis included studies that presented data on antimicrobial susceptibility testing using the E-test, agar dilution, or broth microdilution techniques. The extracted data included minimum inhibitory concentration (MIC) values and a comprehensive characterization analysis.
    UNASSIGNED: A total of 1582 studies were identified in scientific databases, of which only 80 were subjected to analysis. The research on Clostridioides difficile antimicrobial resistance (AMR) in veterinary medicine is most prolific in Europe and North America. The majority of isolates originate from production animals (55%) and pets (15%), with pigs, horses, and cattle being the most commonly studied species. The tested agents\' minimum inhibitory concentrations (MICs) and resulting putative antimicrobial resistance profiles exhibited considerable diversity across animal species and sources of isolation. Additionally, AMR characterization has been conducted at the gene and genomic level in animal strains. The E-test was the most frequently utilized method for antimicrobial susceptibility testing (AST). Furthermore, the breakpoints for interpreting the MICs were found to be highly heterogeneous and frequently observed regardless of the geographical origin of the publication.
    UNASSIGNED: Antimicrobial susceptibility testing techniques and results were found to be diverse and heterogeneous. There is no evidence of an exclusive antimicrobial resistance pattern in any animal species. Despite the phenotypic and genomic data collected over the years, further interdisciplinary studies are necessary. Our findings underscore the necessity for international collaboration to establish uniform standards for C. difficile antimicrobial susceptibility testing (AST) methods and reporting. Such collaboration would facilitate a \"One Health\" approach to surveillance and control, which is of paramount importance.
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  • 文章类型: Journal Article
    目的:可以通过补充有裂解马血(MHB-LHB)的Mueller-Hinton肉汤的肉汤微量稀释(BMD)进行尿液气球菌抗菌敏感性测试(AST)。我们试图将其与常用的梯度扩散方法进行比较。
    方法:我们比较了BMD与MHB-LHB的梯度扩散,通过补充绵羊血的MH琼脂对190个尿液分离株的梯度扩散。
    结果:没有抗菌药物表现出超过90%的基本和分类一致性(EA和CA)和不到3%的主要和非常主要的错误率(ME和VME)。甲氧苄啶-磺胺甲恶唑(TMP-STX)的主要错误率为81%,头孢曲松的主要错误率为76%。用裂解的马血进行琼脂稀释(AD)对94个分离株进行TMP-STX,发现100%的敏感性。与以前的研究一致。
    结论:我们的发现不能支持常规使用添加绵羊血的MH琼脂梯度扩散来替代CLSI方法,因为CLSI方法在检测耐药菌株方面具有局限性。我们的研究结果表明,尿液通常对青霉素敏感,利奈唑胺,四环素,和万古霉素.未来的研究应该评估临床微生物学实验室的替代测试方法。
    OBJECTIVE: Aerococcus urinae antimicrobial susceptibility testing can be performed via broth microdilution with Mueller-Hinton broth supplemented with lysed horse blood. We sought to compare this with the commonly used gradient diffusion method.
    METHODS: We compared broth microdilution with Mueller-Hinton broth supplemented with lysed horse blood and gradient diffusion via Mueller-Hinton agar supplemented with sheep blood for 190 A. urinae isolates against 16 antimicrobials.
    RESULTS: No antimicrobials demonstrated more than 90% essential and categorical agreement, and fewer than 3% demonstrated major and very major error rates. Trimethoprim-sulfamethoxazole demonstrated an 81% major error rate and ceftriaxone demonstrated a 76% very major error rate. Agar dilution with lysed horse blood was performed for trimethoprim-sulfamethoxazole against 94 isolates and showed 100% susceptibility, consistent with previous studies.
    CONCLUSIONS: Given its limitations in detecting resistant strains, our findings cannot support the routine use of gradient diffusion with Mueller-Hinton agar supplemented with sheep blood for A. urinae in lieu of the Clinical and Laboratory Standards Institute method. Our results suggest that A. urinae is usually susceptible to penicillin, linezolid, tetracycline, and vancomycin. Future studies should evaluate alternative testing methods for clinical microbiology laboratories.
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  • 文章类型: Journal Article
    背景:Furoxan和苯并呋喃是含有N-氧化物官能团的化合物,以其不同的药理特性而闻名,包括抗菌和抗炎作用。本研究旨在使用N-氧化物化合物的内部文库来研究这些活性。
    方法:对20种化合物进行了革兰氏阳性和革兰氏阴性菌试验,包括痤疮切杆菌(C.痤疮),与寻常痤疮的发展有关的微生物。一种化合物,(E)-4-((2-(3-羟基苯甲酰基)腙)甲基)苯氧基)-3-(苯基磺酰基)-1,2,5-恶二唑-2-N-氧化物(化合物15),表现出对痤疮梭菌的选择性抗菌活性,最小抑制浓度(MIC)值为2μg/mL。一氧化氮(NO)释放的间接测量表明,化合物15和硝酸异山梨酯,用L-半胱氨酸处理时,产生的亚硝酸盐含量为20.1%和9.95%,分别。在痤疮梭菌培养物中使用NO清除剂(PTIO)与化合物15组合导致抗微生物活性降低。表明NO释放是其作用机制的一部分。使用鼠巨噬细胞的细胞毒性评估显示,在高达0.78μg/mL的浓度下,细胞活力高于70%。
    结果:白细胞介素-1β(IL1-β)和肿瘤坏死因子-α(TNF-α)的测量表明化合物15不降低这些促炎细胞因子的水平。已发现巨噬细胞或嗜中性粒细胞中诱导型一氧化氮合酶(iNOS)的持续NO产生参与寻常痤疮的炎症过程,并导致周围组织的毒性。发现在0.78μg/mL的化合物15的浓度下,鼠巨噬细胞的上清液中的亚硝酸盐水平降低,表明抗炎作用。使用皮下接种痤疮梭菌的Balb/c裸鼠进行体内研究。将化合物15的乳膏和凝胶制剂用于治疗动物,以及市售的抗痤疮药物,14天。与其他组相比,用含有5%化合物15的乳膏基质处理的动物表现出较少的棘皮病和轻度炎症浸润。突出其抗炎特性。
    结论:在过氧化苯甲酰基团中观察到类似的结果,证明化合物15具有与FDA批准的药物相当的抗炎活性。这些有希望的结果表明,化合物15具有双重作用机制,具有针对痤疮梭菌的选择性抗菌活性和显着的抗炎特性,使其成为开发寻常痤疮新疗法的潜在原型。
    BACKGROUND: Furoxan and benzofuroxan are compounds containing an N-oxide function, known for their diverse pharmacological properties, including antimicrobial and antiinflammatory effects. This study aimed to investigate these activities using an in-house library of N-oxide compounds.
    METHODS: Twenty compounds were tested against both Gram-positive and Gram-negative bacteria, including Cutibacterium acnes (C. acnes), a microorganism implicated in the development of acne vulgaris. One compound, (E)-4-(3-((2-(3-hydroxybenzoyl)hydrazone)methyl)phenoxy)-3- (phenylsulfonyl)-1,2,5-oxadiazol-2-N-oxide (compound 15), exhibited selective antimicrobial activity against C. acnes, with a Minimum Inhibitory Concentration (MIC) value of 2 μg/mL. Indirect measurement of Nitric Oxide (NO) release showed that compound 15 and isosorbide dinitrate, when treated with L-cysteine, produced nitrite levels of 20.1% and 9.95%, respectively. Using a NO scavenger (PTIO) in combination with compound 15 in a culture of C. acnes resulted in reduced antimicrobial activity, indicating that NO release is part of its mechanism of action. Cytotoxicity assessments using murine macrophages showed cellular viability above 70% at concentrations up to 0.78 μg/mL.
    RESULTS: Measurements of Interleukin-1 beta (IL1-β) and Tumor Necrosis Factor-alpha (TNF-α) indicated that compound 15 did not reduce the levels of these pro-inflammatory cytokines. Sustained NO production by inducible Nitric Oxide Synthase (iNOS) in macrophages or neutrophils has been found to be involved in the inflammatory process in acne vulgaris and lead to toxicity in surrounding tissues. Nitrite levels in the supernatant of murine macrophages were found to be decreased at a concentration of 0.78 μg/mL of compound 15, indicating an anti-inflammatory effect. In vivo studies were conducted using Balb/c nude mice inoculated subcutaneously with C. acnes. Cream and gel formulations of compound 15 were applied to treat the animals, along with commercially available anti-acne drugs, for 14 days. Animals treated with a cream base containing 5% of compound 15 exhibited less acanthosis with mild inflammatory infiltration compared to other groups, highlighting its anti-inflammatory properties.
    CONCLUSIONS: Similar results were observed in the benzoyl peroxide group, demonstrating that compound 15 presented comparable anti-inflammatory activity to the FDA-approved drug. These promising results suggest that compound 15 has a dual mechanism of action, with selective antimicrobial activity against C. acnes and notable anti-inflammatory properties, making it a potential prototype for developing new treatments for acne vulgaris.
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  • 文章类型: Journal Article
    细菌性角膜炎是一种常见且严重的疾病,如果不及时和充分治疗,通常会导致视力障碍和潜在的眼睛损失。外用血液制品通常与外用抗生素同时使用,有助于减轻眼表释放的蛋白酶的角膜融化。然而,血液制品含有丰富的白蛋白,由于药物-蛋白结合,可能会影响抗生素的疗效。在这项研究中,从10只健康的狗和10只健康的马收集血清和血浆样本,获得新鲜和冷冻(在-20°C下1个月)的等分试样用于体外实验。使用物种特异性ELISA试剂盒定量白蛋白水平。30个细菌(10个假中间葡萄球菌,10犬链球菌,10铜绿假单胞菌),从患有传染性角膜炎的犬患者中分离出来,分别用空白板和商业药敏板(Sensivitre™JOEYE2)测试,以评估在不存在(对照)或存在八个测试组的情况下17种不同抗生素的最小抑制浓度(MIC):来自犬或马的血清或血浆(新鲜或冷冻)。犬和马血液制品中的白蛋白浓度范围为13.8-14.6mg/mL和25.9-26.5mg/mL,分别。马与马之间主要观察到直接的抗菌作用。犬血液制品(特别是血清和较低程度的血浆),主要是假中间葡萄球菌。在有血液制品的情况下,中等收入国家通常会增加(高达10.8倍),尽管选定的抗生素和眼部病原体的MIC也下降了(降至0.25倍)。犬血液制品[2(0.67-8.1)]的MIC的中位数(范围)倍数变化明显大于(p=0.004)马血液制品[2(0.5-5)]。在实践中,临床医生应该考虑马而不是犬科血液制品(对抗菌药物敏感性的影响较小),血清高于血浆(更大的抗菌作用),并在最后一次抗生素滴眼液后≥15分钟施用血液制品,以最大程度地减少泪膜中白蛋白-抗生素的结合量。
    Bacterial keratitis is a common and serious condition that often leads to vision impairment and potential loss of the eye if not treated promptly and adequately. Topical blood products are often used concurrently with topical antibiotics, helping to mitigate corneal \'melt\' from proteases released on the ocular surface. However, blood products are rich in albumin and could affect the efficacy of antibiotics due to drug-protein binding. In this study, serum and plasma samples were harvested from 10 healthy dogs and 10 healthy horses, obtaining fresh and frozen (1 month at -20°C) aliquots for in vitro experiments. Albumin levels were quantified using species-specific ELISA kits. Thirty bacteria (10 Staphylococcus pseudintermedius, 10 Streptococcus canis, 10 Pseudomonas aeruginosa), isolated from canine patients with infectious keratitis, were each tested with blank plates as well as commercial susceptibility plates (Sensititre™ JOEYE2) to assess the minimal inhibitory concentration (MIC) of 17 different antibiotics in the absence (control) or presence of eight test groups: serum or plasma (fresh or frozen) from canines or equines. Albumin concentrations ranged from 13.8-14.6 mg/mL and 25.9-26.5 mg/mL in canine and equine blood products, respectively. A direct antimicrobial effect was observed mostly with equine vs. canine blood products (specifically serum and to a lesser degree plasma), and mostly for Staphylococcus pseudintermedius isolates. MICs generally increased in the presence of blood products (up to 10.8-fold), although MICs also decreased (down to 0.25-fold) for selected antibiotics and ocular pathogens. Median (range) fold changes in MICs were significantly greater (p = 0.004) with the canine blood products [2 (0.67-8.1)] than the equine blood products [2 (0.5-5)]. In practice, clinicians should consider equine over canine blood products (lesser impact on antimicrobial susceptibility), serum over plasma (greater antimicrobial effects), and administering the blood product ≥15 min following the last antibiotic eyedrop to minimize the amount of albumin-antibiotic binding in tear film.
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  • 文章类型: Journal Article
    横纹肌是肠杆菌科(肠杆菌)的革兰氏阴性杆部分,是人类感染的罕见原因。尽管改进的诊断方法导致这种难以捉摸的病原体的报告增加,信息仍然有限。为了更好地了解这种细菌,我们对其生物学进行了第一次全面审查,生化概况,抗菌素耐药性模式,毒力因子,天然水库和参与各种兽医和人类感染。人类感染这种细菌的报道很少,很可能是由于其与肺泡哈夫尼亚的鉴定和生化相似性的限制。多次系统搜索发现23例人类感染病例,看似全球分布,主要是中年或老年男性患者,常与免疫抑制有关。迄今为止,Y.regensburgei已被报道在皮肤和软组织感染中,菌血症和败血症,骨关节感染和其他如泌尿道和消化道感染。Y.regensburgei降解聚苯乙烯的独特能力为在不久的将来解决塑料污染提供了一种新颖而有前途的途径。然而,这种细菌的大规模应用无疑会增加人类的暴露,强调对其在人类和兽医感染中的作用进行全面研究的必要性,致病性和抗生素抗性。
    Yokenella regensburgei is a Gram-negative rod part of the Enterobacteriaceae family (order Enterobacterales) and a rare cause of human infections. Although improved diagnostic methods have led to an increase in reports of this elusive pathogen, information remains limited. In order to provide a better understanding of this bacterium, we developed the first comprehensive review of its biology, biochemical profile, antimicrobial resistance pattern, virulence factors, natural reservoir and involvement in various veterinary and human infections. Human infections with this bacterium are scarcely reported, most probably due to constraints regarding its identification and biochemical similarities to Hafnia alvei. Multiple systematic searches revealed 23 cases of human infection, with a seemingly worldwide distribution, mostly in middle-aged or elderly male patients, often associated with immunosuppression. To date, Y. regensburgei has been reported in skin and soft tissue infections, bacteremia and sepsis, osteoarticular infections and in others such as urinary tract and digestive infections. The unique ability of Y. regensburgei to degrade polystyrene presents a novel and promising avenue for addressing plastic pollution in the near future. However, large-scale applications of this bacterium will undoubtedly increase human exposure, highlighting the necessity for comprehensive research into its role in human and veterinary infections, pathogenicity and antibiotic resistance.
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  • 文章类型: Journal Article
    咽部感染比生殖器或直肠感染更难以诊断和治疗,并且可以作为淋球菌感染的宿主。我们确定了韩国尿道炎男性中咽淋病的患病率,并分析了分离株的分子特征和抗菌药物敏感性。
    72名患有尿道炎症状的男性患者在元州的泌尿外科诊所就诊,韩国,包括2016年9月至2018年3月之间的数据.尿道和咽部淋球菌培养物,抗菌药物敏感性试验,淋病奈瑟菌多抗原序列分型(NG-MAST),并进行多重实时荧光定量PCR(mRT-PCR)。
    在72名患者中,59通过mRT-PCR检测淋球菌呈阳性。在这59名患者中,18例(30.5%)咽部和尿道均呈阳性,而41只在尿道测试呈阳性。NG-MAST在18例患者中有16例可行,并显示14例患者在尿道和咽部标本中具有相同的序列类型,而两名患者在尿道和咽部之间表现出不同的序列类型。在72名患者中,33个检测培养阳性。所有患者仅在尿道标本中检测为阳性,除了一名患者两者检测均为阳性。所有培养阳性标本也通过mRT-PCR检测为阳性。所有分离株均对阿奇霉素和壮观霉素敏感,但对头孢曲松和头孢克肟的耐药率分别为2.9%和14.7%,分别。
    在患有淋球菌性尿道炎的韩国男性中咽淋病的患病率高达30.5%,强调在高危人群中需要进行咽部筛查。头孢曲松是咽部淋病的推荐治疗方法。
    UNASSIGNED: Pharyngeal infection is more difficult to diagnose and treat than genital or rectal infection and can act as a reservoir for gonococcal infection. We determined the prevalence of pharyngeal gonorrhea in Korean men with urethritis and analyzed the molecular characteristics and antimicrobial susceptibility of the isolates.
    UNASSIGNED: Seventy-two male patients with symptoms of urethritis who visited a urology clinic in Wonju, Korea, between September 2016 and March 2018 were included. Urethral and pharyngeal gonococcal cultures, antimicrobial susceptibility testing, Neisseria gonorrhoeae multi-antigen sequence typing (NG-MAST), and multiplex real-time PCR (mRT-PCR) were performed.
    UNASSIGNED: Among the 72 patients, 59 tested positive for gonococcus by mRT-PCR. Of these 59 patients, 18 (30.5%) tested positive in both the pharynx and urethra, whereas 41 tested positive only in the urethra. NG-MAST was feasible in 16 out of 18 patients and revealed that 14 patients had the same sequence types in both urethral and pharyngeal specimens, whereas two patients exhibited different sequence types between the urethra and pharynx. Of the 72 patients, 33 tested culture-positive. All patients tested positive only in urethral specimens, except for one patient who tested positive in both. All culture-positive specimens also tested positive by mRT-PCR. All isolates were susceptible to azithromycin and spectinomycin, but resistance rates to ceftriaxone and cefixime were 2.9% and 14.7%, respectively.
    UNASSIGNED: The prevalence of pharyngeal gonorrhea in Korean men with gonococcal urethritis is as high as 30.5%, highlighting the need for pharyngeal screening in high-risk groups. Ceftriaxone is the recommended treatment for pharyngeal gonorrhea.
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  • 文章类型: Journal Article
    将由VITEK®2产生的来自北美和拉丁美洲的488例肠杆菌的VITEK®2AESβ-内酰胺表型与通过全基因组测序(WGS)提供的抗性基因型进行比较。AES提供了447个(91.6%)分离株的表型报告,包括含有碳青霉烯酶的分离株(195;43.6%),ESBLs(103;23.0%)和可转移AmpC(tAmpC;28;6.3%)基因,以及野生型分离株(WT;121;27.1%)。总的来说,AES报告对433/447(96.9%)个分离株准确.AES准确地报告了碳青霉烯酶,ESBL,和tAmpC表型为93.7%,93.7%,和98.4%的分离株,分别,敏感性/特异性分别为96.4%/91.7%,98.1%/92.4%,82.1%/99.5%,和100%/98.8%。14株携带碳青霉烯酶的分离株(共7株;3KPC,2MBL,2OXA-48-like),ESBL(2),和tAmpC编码基因(5)未通过AES正确鉴定。AES表型报告迅速检测到肠杆菌中的耐药机制,可以显着帮助未来的抗菌药物管理计划和患者护理。
    The VITEK®2 AES β-lactam phenotypes of 488 Enterobacterales from North and Latin America generated by the VITEK®2 were compared to the resistance genotypes provided by whole genome sequencing (WGS). The AES provided phenotypic reports for 447 (91.6 %) isolates, including isolates harbouring carbapenemases (195; 43.6 %), ESBLs (103; 23.0 %) and transferable AmpCs (tAmpC; 28; 6.3 %) genes, as well as wildtype isolates (WT; 121; 27.1 %). Overall, the AES report was accurate for 433/447 (96.9 %) isolates. The AES accurately reported carbapenemase, ESBL, and tAmpC phenotypes for 93.7 %, 93.7 %, and 98.4 % of isolates, respectively, and sensitivity/specificity rates were 96.4 %/91.7 %, 98.1 %/92.4 %, 82.1 %/99.5 %, and 100 %/98.8 %. 14 isolates carrying carbapenemase (7 total; 3 KPC, 2 MBL, 2 OXA-48-like), ESBL (2), and tAmpC-encoding genes (5) were not correctly identified by AES. The AES phenotypic report detected resistance mechanisms among Enterobacterales rapidly and could significantly aid future antimicrobial stewardship initiatives and patient care.
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  • 文章类型: Journal Article
    背景:在您的实验室中可以常规使用新测试之前,它的可靠性必须在使用它的实验室中建立。国际标准要求新测试的验证和验证程序。国际标准化组织(ISO)15189最近更新,欧盟委员会的体外诊断条例(IVDR)生效。这些事件可能会增加对验证和验证程序的需求。
    目的:本文旨在为验证或验证微生物学测试提供实践指导。包括临床微生物实验室的抗菌药物敏感性试验。
    方法:它总结和解释了标准,如ISO15189:20222和法规,如IVDR2017/745。
    背景:讨论了选择新测试的原因以及验证和验证计划的大纲。Further,涉及以下主题:参考标准的选择,样品数量,测试程序,如何解决新测试和参考标准的结果之间的差异,和验收标准。给出了选择某些参数(例如参考标准和样品大小)的参数和示例。
    结论:由于实施IVDR,预期验证和验证程序会增加,本文可能有助于规划和执行这些程序。
    BACKGROUND: Before a new test can be routinely used in your laboratory, its reliability must be established in the laboratory where it will be used. International standards demand validation and verification procedures for new tests. The International Organization for Standardization (ISO) 15189 was recently updated, and the European Commission\'s In Vitro Diagnostic Regulation (IVDR) came into effect. These events will likely increase the need for validation and verification procedures.
    OBJECTIVE: This paper aims to provide practical guidance in validating or verifying microbiology tests, including antimicrobial susceptibility tests in a clinical microbiology laboratory.
    METHODS: It summarizes and interprets certain parts of standards such as ISO 15189:2022, and regulations, such as IVDR 2017/746 regarding validation or verification of a new test in a routine clinical microbiology laboratory.
    BACKGROUND: The reasons for choosing a new test and the outline of the validation and verification plan are discussed. Furthermore, the following topics are touched upon: the choice of reference standard, number of samples, testing procedures, how to solve the discrepancies between results from new test and reference standard, and acceptance criteria. Arguments for selecting certain parameters (such as reference standard and sample size) and examples are given.
    CONCLUSIONS: With the expected increase in validation and verification procedures because of the implementation of IVDR, this paper may aid in planning and executing these procedures.
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  • 文章类型: Journal Article
    铜绿假单胞菌,一种难以管理的医院病原体,在重症监护(ICU)患者中,由于其高耐药性(AMR),对临床结果构成严重威胁。促进有效管理,研究分离株AMR表达的基因组和表型差异至关重要。
    一项前瞻性观察性研究于2022年7月至2023年4月在拉脱维亚利耶帕亚地区医院进行。该研究包括所有入住ICU并有记录的铜绿假单胞菌感染的成年患者,如标准实验室微生物测试和短读数测序所证实。由于ResFinder是唯一基于测序的数据库,提供每种抗生素的抗菌药敏试验(AST)数据,我们对耐药谱与表型检测结果进行了比较,评估ResFinder是否符合美国食品和药物管理局(FDA)批准作为新的AMR诊断测试的要求.接下来,为了提高精度,将来自ResFinder的AST数据与两个其他数据库-AMRFinderPlus和RGI进行比较。此外,从环境样本中收集数据,以实时告知实施适当的感染控制措施。
    我们的队列包括来自29名ICU患者的33个样本和34个环境样本。发现铜绿假单胞菌感染的存在与不利的临床结果相关。三分之一的患者样本被鉴定为多药耐药分离株。除了对粘菌素的抗性,当将表型数据与基因型数据进行比较时,观察到显著差异.例如,ResFinder的氨基糖苷类耐药性预测得出阿米卡星的主要误差值为3.03%,略高于FDA的阈值。在三个阳性环境样本中,一个样本显示多个AMR基因,其与患者样本相似.
    我们的发现强调了利用联合诊断方法识别抗性机制的重要性。集群,和ICU中的环境水库。
    UNASSIGNED: Pseudomonas aeruginosa, a difficult-to-manage nosocomial pathogen, poses a serious threat to clinical outcomes in intensive care (ICU) patients due to its high antimicrobial resistance (AMR). To promote effective management, it is essential to investigate the genomic and phenotypic differences in AMR expression of the isolates.
    UNASSIGNED: A prospective observational study was conducted from July 2022 to April 2023 at Liepaja Regional Hospital in Latvia. The study included all adult patients who were admitted to the ICU and had a documented infection with P. aeruginosa, as confirmed by standard laboratory microbiological testing and short-read sequencing. Since ResFinder is the only sequencing-based database offering antibacterial susceptibility testing (AST) data for each antibiotic, we conducted a comparison of the resistance profile with the results of phenotypic testing, evaluating if ResFinder met the US Food and Drug Administration (FDA) requirements for approval as a new AMR diagnostic test. Next, to improve precision, AST data from ResFinder was compared with two other databases - AMRFinderPlus and RGI. Additionally, data was gathered from environmental samples to inform the implementation of appropriate infection control measures in real time.
    UNASSIGNED: Our cohort consisted of 33 samples from 29 ICU patients and 34 environmental samples. The presence of P. aeruginosa infection was found to be associated with unfavourable clinical outcomes. A third of the patient samples were identified as multi-drug resistant isolates. Apart from resistance against colistin, significant discrepancies were observed when phenotypic data were compared to genotypic data. For example, the aminoglycoside resistance prediction of ResFinder yielded a major errors value of 3.03% for amikacin, which was marginally above the FDA threshold. Among the three positive environmental samples, one sample exhibited multiple AMR genes similar to the patient samples in its cluster.
    UNASSIGNED: Our findings underscore the importance of utilizing a combination of diagnostic methods for the identification of resistance mechanisms, clusters, and environmental reservoirs in ICUs.
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