Taxonomy

分类法
  • 文章类型: Case Reports
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  • 文章类型: Journal Article
    基于Pugliesemiatitiznanagen的物种,描述并说明了一个新的单型属。11月。等sp.11月。来自伯南布哥州的卡廷加地区,巴西。它属于新热带地区的一小群属(StonyxOstenSacken,LepidanthraxOstenSacken,RhynchanthraxPainter)在Villini部落中,有一个突出的长鼻。此外,我们还提供了Villini已知巴西属的最新识别密钥,的描述和插图的情况下,关于该物种的摄食习惯和寄主记录的生物学评论,以及关于Villini系统学和属边界的简要讨论。
    A new monotypic genus is described and illustrated based on the species Pugliesemyia titiznana gen. nov. et sp. nov. from the Caatinga domains of the state of Pernambuco, Brazil. It belongs to the small group of genera in the Neotropical region (Stonyx Osten Sacken, Lepidanthrax Osten Sacken, Rhynchanthrax Painter) among the tribe Villini, with a projecting proboscis. In addition, we also provide an updated identification key to the known Brazilian genera of Villini, description and illustrations of the pupal case, bionomic remarks on the feeding habits and the host record of the species and a brief discussion on Villini systematics and boundaries of their genera.
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  • 文章类型: Journal Article
    浮游甲藻原甲藻在温暖和温带海域广泛分布。鉴定为P.cf.compressumBEA0681B从大加那利岛隔离,东北大西洋,显示rDNA/ITS系统发育相对于P.compressum的差异。加那利菌株是椭圆形的,平均长宽比为1.35,光滑的皮层表面,小于150个皮层孔,包括斜毛孔,有时有分叉的开口。相比之下,P.压缩更圆,长宽比<1.2,网状中心凹装饰,每个瓣膜有200-300个孔。我们提出了卡那利甲原。11月。这些物种聚集为进化枝中最早分支的谱系。虽然这个进化枝主要含有浮游物种,近亲是底栖动物P.tsawwassenense和P.elegans。有趣的是,P.压缩和P.canariensesp。11月。广泛分布在温带和温暖的海洋中,对浮游生命没有明显的形态适应。两个同心透明粘液壁的形成可能有助于这一成功。我们讨论了使用Proorocentrumbidens来解决P.compressum的命名问题,该问题以硅藻为同义词。
    The planktonic dinoflagellate Prorocentrum compressum is widespread in warm and temperate seas. A strain identified as P. cf. compressum BEA 0681B isolated from the island of Gran Canaria, NE Atlantic Ocean, showed a divergence in rDNA/ITS phylogenies with respect to P. compressum. The Canarian strain was oval, with an average length-to-width ratio of 1.35, smooth thecal surface with less than 150 thecal pores, including oblique pores, sometimes with a bifurcated opening. In contrast, P. compressum was rounder, with a length-to-width ratio < 1.2, with reticulate-foveate ornamentation and 200-300 pores per valve. We propose Prorocentrum canariense sp. nov. These species clustered as the most early-branching lineage in the clade Prorocentrum sensu stricto. Although this clade mainly contains planktonic species, the closer relatives were the benthic species P. tsawwassenense and P. elegans. Interestingly, P. compressum and P. canariense sp. nov. are widely distributed in temperate and warm seas without an apparent morphological adaptation to planktonic life. The formation of two concentric hyaline mucilaginous walls could contribute to this success. We discuss the use of Prorocentrum bidens to solve the nomenclature issue of P. compressum that was described citing a diatom as basionym.
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  • 文章类型: Journal Article
    分类历史,综述了尖囊皮菌和乳杆菌之间常见杂种可用的最古老物种名称的命名和应用。EliasFries用第二个版本替换了exsiccata标本室的印刷标签,从而造成了命名和书目冲突。稍后分发,其中出现了suecicum的原型。在这个主题中,新物种名称已有效发布,仅引用了H.auriculavar的原始描述。majus,因此是基于后者的类型。在同一Exsiccata的后来的分册中,Fries排除了这个同义词,并分布了不同的H.suecicum形态,这引起了分类学上的混乱,并以H.fennicum的名称对同一分类单元进行了重新描述。尚存的原始材料。马修斯被拒绝,它的新类型被指定,使H.suecicum成为严格介于P.lactucella和P.caespitosa之间的杂种的正确名称。这种杂种构成了斯堪的纳维亚半岛Pilosella最常见的杂种类群,芬兰和邻国俄罗斯,有许多同义词从这一领域描述,并在这里部分典型。另一个同源的杂种类群,更类似于乳杆菌,以前被称为幽门螺旋杆菌,被正确地命名为P.stipitifloracomb。11月。Exsiccata的命名价值和书目复杂性,分类植物学中一种普遍被低估的灰色文献,进一步强调。
    The taxonomic history, nomenclature and application of the oldest species names available for the common hybrids between Pilosella caespitosa and P. lactucella are reviewed. Elias Fries created a nomenclatural and bibliographical collision when he replaced a printed label of his exsiccata Herbarium normale with its second version, distributed at a later date, in which the protologue of Hieracium suecicum had appeared. In this protologue, the new species name was validly published with a mere reference to the original description of H. auricula var. majus, thus being based on the type of the latter. In a later fascicle of the same exsiccata, Fries excluded this synonym and distributed a different morphotype of H. suecicum, which caused taxonomic confusion and re-description of the same taxon under the name H. fennicum. The surviving original material of H. auricula var. majus is rejected, and its neotype is designated, making H. suecicum the correct name for the hybrids strictly intermediate between P. lactucella and P. caespitosa. Such hybrids constitute the most common hybridogenous taxon of Pilosella in Scandinavia, Finland and neighbouring Russia, with many synonyms described from this area and partly typified here. Another hybridogenous taxon of the same origin, more similar to P. lactucella and previously known as P. cochlearis, is correctly named P. stipitiflora comb. nov. The nomenclatural value and bibliographic complexity of exsiccata, a commonly underestimated kind of grey literature in taxonomic botany, are further highlighted.
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  • 文章类型: Journal Article
    评估尺度形态变异性(形状,尺寸,拓扑宏观和微观结构,鲤鱼的装饰图案),选择了Garra属的9种,并使用光学和扫描电子显微镜研究了它们来自五个不同身体区域的尺度。被检查物种的尺度很薄,焦点位于中央或中央,后部没有cteni。除了这些典型的特征,在整体形状中观察到一些形态变化(不规则圆形,真正的椭圆形,圆形三角形,不规则的五边形,六边形,不规则六边形,五边形,卵形),和焦点形状。这些变化主要取决于鱼的长度和侧翼区域。形态学分析将检查的物种分为两个不同的组。第一组由G.amirhosseini和G.gynotorax组成,而第二组有三个子组,其中包括G.persica和G.mondica(I亚组),G.meymehensis,G.Rossica,G.nudiventris,G.hormuzensis(亚组II),和G.rufa(第三组)。根据当前的尺度形态特征和分子数据对所研究的Garra物种进行分组仅与G.rossica和G.nudiventris一致。此外,在系统发育树中,G.Persica,G.Mondica,G.Amirhosseini,和G.hormuzensis形成了一个独特的进化枝。然而,在从鳞片形态学获得的树状图中,这些物种并不代表密切关系。为什么根据其鳞片形态特征对所研究的Garra物种进行分组与它们的系统发育关系不匹配的一个可能解释是,大多数鳞片形态特征取决于鱼类的大小和鳞片在侧翼的位置。因此,除了一些特质,也就是说,中央或前中央定位的焦点,没有cteni,一种特定的分段形式,称为“四分段”类型,其他检查的变量不足以用于检查的鲤鱼的分类学研究。因此,尺度形态特征应谨慎用于分类学目的。研究重点:形状,尺寸,拓扑宏观和微观结构,利用光学和扫描电子显微镜研究了加拉属9种的装饰模式。鳞片很薄,有中央或中央定位的焦点,后部没有cteni。在整体形状(不规则圆形,真正的椭圆形,圆形三角形,不规则的五边形,六边形,不规则六边形,五边形,和卵形),和焦点形状。根据当前尺度形态特征和分子数据对Garra物种的分组仅与G.rossica和G.nudiventris一致。
    To evaluate scale morphological variability (shape, size, topological macro- and microstructures, ornamentation patterns) of cyprinid fishes, nine species of the genus Garra were selected and their scales from five different body regions were studied by using light and scanning electron microscopy. The scales of the examined species were thin with a central or antero-centrally positioned focus, with no cteni in the posterior part. In addition to these typical characteristics, some morphological variation was observed in the overall shape (irregular round, true oval, round-triangular, irregular pentagonal, hexagonal, irregular hexagonal, pentagonal, ovoid), and the focus shape. These variations were mainly dependent on the fish lengths and the flank region. Morphological analysis clustered the examined species into two distinct groups. Group I consisted of G. amirhosseini and G. gymnothorax, while Group II has three subgroups, which include G. persica and G. mondica (subgroup I), G. meymehensis, G. rossica, G. nudiventris, G. hormuzensis (subgroup II), and G. rufa (subgroup III). The grouping of the studied Garra species based on the current scale morphological characters and the molecular data was only consistent for G. rossica and G. nudiventris. In addition, in the phylogenetic tree, G. persica, G. mondica, G. amirhosseini, and G. hormuzensis formed a distinct clade. However, these species did not represent close relationships in the dendrogram obtained from the scale morphology. A possible explanation why the grouping of the studied Garra species based on their scale morphological characters does not match their phylogenetic relationships is that most of the scale morphological traits vary depending on the fish size and the location of the scales on the flank. Therefore, except for some traits, that is, central or antero-centrally positioned focus, having no cteni, a specific sectioned form so called \"tetra-sectioned\" type, the other examined variables are not useful enough to be used in the taxonomic study of the examined cyprinid fishes. Therefore, scale morphological characters should be used carefully for taxonomic purposes. RESEARCH HIGHLIGHTS: Shape, size, topological macro- and microstructures, and ornamentation patterns of nine species of the genus Garra were studied by using light and scanning electron microscopy. The scales were thin with a central or antero-centrally positioned focus, with no cteni in the posterior part. Morphological variation was observed in the overall shape (irregular round, true oval, round-triangular, irregular pentagonal, hexagonal, irregular hexagonal, pentagonal, and ovoid), and the focus shape. The grouping of Garra species based on the current scale morphological characters and the molecular data was only consistent for G. rossica and G. nudiventris.
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  • 文章类型: Journal Article
    Phlomoides是唇科最大的属之一,约有150-170种主要分布在欧亚大陆。在这项研究中,我们描述和说明一个新物种,P.henryi,以前被误认为是P.bracteosa,来自云南省,中国西南。分子系统发育分析表明,在大多数物种缺乏基叶的进化枝中发现了P.henryi。在这个进化枝,该新物种在形态上与轮曲的区别在于具有明显的茎,从其余的,上花冠唇内有透明到白色的毛状体。此外,花萼和叶表皮上毛状体的微观特征可以将新物种与同一进化枝和关键中的其他物种区分开来,基于这些物种的毛状体形态,提供。研究结果表明,使用扫描电子显微镜可以揭示形态相似物种之间不明显的形态亲和力,并且在Phlomoides属的分类学研究中起着重要作用。
    Phlomoides is one of the largest genera of Lamiaceae with approximately 150-170 species distributed mainly in Eurasia. In this study, we describe and illustrate a new species, P.henryi, which was previously misidentified as P.bracteosa, from Yunnan Province, southwest China. Molecular phylogenetic analyses revealed that P.henryi is found within a clade in which most species lack basal leaves. In this clade, the new species is morphologically distinct from P.rotata in having an obvious stem and, from the rest, by having transparent to white trichomes inside the upper corolla lip. In addition, micro-features of trichomes on the calyx and leaf epidermis can differentiate the new species from other species grouped in the same clade and a key, based on trichome morphology for these species, is provided. The findings demonstrate that the use of scanning electron microscopy can reveal inconspicuous morphological affinities amongst morphologically similar species and play an important role in the taxonomic study of the genus Phlomoides.
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  • 文章类型: Journal Article
    生物数据的检索和可视化对于理解复杂系统至关重要。随着高通量测序技术产生的数据量不断增加,有效和优化的数据可视化工具已成为不可或缺的。这在COVID-19大流行后时期尤其重要,了解微生物群落的多样性和相互作用(即,病毒和细菌)构成了制定和计划适当干预措施的重要资产。在这一章中,我们展示了ExTaxsI(探索分类信息)工具的用途和潜力,以检索存储在国家生物技术信息中心(NCBI)数据库中的病毒生物多样性数据,并创建相关的可视化。此外,通过集成不同的功能和模块,该工具生成相关类型的可视化图,以促进微生物生物多样性群落的探索,有助于深入了解不同物种之间的生态和分类关系,并确定潜在的重要目标。使用猴痘病毒作为案例研究,这项工作指出了生物数据可视化的重要观点,可以用来深入了解生态,进化,和病毒的发病机理。因此,我们展示了ExTaxsI组织和描述可用/下载数据的潜力,简单,和可解释的方式,允许用户通过特定的过滤器与可视化图动态交互,缩放,探索功能。
    Retrieval and visualization of biological data are essential for understanding complex systems. With the increasing volume of data generated from high-throughput sequencing technologies, effective and optimized data visualization tools have become indispensable. This is particularly relevant in the COVID-19 postpandemic period, where understanding the diversity and interactions of microbial communities (i.e., viral and bacterial) constitutes an important asset to develop and plan suitable interventions.In this chapter, we show the usage and the potentials of ExTaxsI (Exploring Taxonomy Information) tool to retrieve viral biodiversity data stored in National Center for Biotechnology Information (NCBI) databases and create the related visualization. In addition, by integrating different functions and modules, the tool generates relevant types of visualization plots to facilitate the exploration of microbial biodiversity communities useful to deep dive into ecological and taxonomic relationships among different species and identify potential significant targets.Using the Monkeypox virus as a case study, this work points out significant perspectives on biological data visualization, which can be used to gain insights into the ecology, evolution, and pathogenesis of viruses. Accordingly, we show the potentiality of ExTaxsI to organize and describe the available/downloaded data in an easy, simple, and interpretable way allowing the user to interact dynamically with the visualization plots through specific filters, zoom, and explore functions.
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  • 文章类型: Journal Article
    在希腊的各个地区和农作物中进行了线虫采样,并使用形态和分子数据对回收的线虫物种进行了表征。回收了7种植物寄生线虫,其中三个是希腊首次报道,包括半乳香,螺旋毛囊和玉米毛囊。希腊已经报告了另外四个恢复的物种,包括苦瓜,微小螺旋藻,小脑和短尾镰刀。提供了所有这些线虫物种的28SrRNA基因的D2-D3区段。
    Nematode samplings in various areas and crops of Greece were carried out and the recovered nematode species were characterized using morphological and molecular data. Seven species of plant-parasitic nematodes were recovered, three of which are reported for the first time in Greece, including Hemicycliophora poranga, Helicotylenchus dihystera and Tylenchorhynchus zeae. Four other recovered species had already been reported in Greece, including Bitylenchus hispaniensis, Helicotylenchus microlobus, Nanidorus minor and Scutellonema brachyurus. D2-D3 segments of 28S rRNA gene for all of these nematode species are provided.
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  • 文章类型: Journal Article
    背景:COVID-19大流行导致全球医疗保健服务受到严重破坏,导致医疗服务适应其标准做法。了解这些适应如何导致患者意外伤害对于减轻未来事件至关重要。事件报告和学习系统数据可用于识别区域以提高患者安全性。需要一个分类系统来理解这些数据,以确定学习和优先事项,以便进一步深入调查。为此创建了患者安全(PISA)分类系统,但目前尚不清楚分类系统是否足以捕捉大流行等危机产生的新安全概念。我们旨在审查PISA分类系统在COVID-19大流行期间的应用,以评估是否需要修改以保持其在大流行背景下的有意义的用途。
    方法:我们进行了一项混合方法研究,顺序设计。这包括对第一波大流行期间进行的两项研究的患者安全事件报告的比较二次分析。我们对来自英国的患者报告事件和来自法国的临床医生报告事件进行了编码。研究结果已提交给分类系统和患者安全方面的焦点专家小组,并对所得成绩单进行了专题分析。
    结果:我们从数据分析和专家小组讨论中确定了五个关键主题。其中包括利用不同群体对安全问题的独特观点,现有框架确实确定了需要进一步调查的优先领域,研究的目标塑造了数据解释,大流行突出了患者长期以来的担忧,收集数据的时间段提供了有价值的背景来帮助解释。小组的共识是,没有COVID-19特定的代码是必要的,PISA分类系统符合目的。
    结论:我们已经仔细研究了在系统医疗保健约束时期对PISA分类系统应用的有意义的使用,COVID-19大流行。尽管有这些限制,我们发现该框架可以成功地应用于事件报告,以实现演绎分析,确定进一步调查的领域,从而支持组织学习。没有新的或修改的代码是必要的。组织和调查人员可以在审查自己的分类系统时使用我们的发现。
    The COVID-19 pandemic resulted in major disruption to healthcare delivery worldwide causing medical services to adapt their standard practices. Learning how these adaptations result in unintended patient harm is essential to mitigate against future incidents. Incident reporting and learning system data can be used to identify areas to improve patient safety. A classification system is required to make sense of such data to identify learning and priorities for further in-depth investigation. The Patient Safety (PISA) classification system was created for this purpose, but it is not known if classification systems are sufficient to capture novel safety concepts arising from crises like the pandemic. We aimed to review the application of the PISA classification system during the COVID-19 pandemic to appraise whether modifications were required to maintain its meaningful use for the pandemic context.
    We conducted a mixed-methods study integrating two phases in an exploratory, sequential design. This included a comparative secondary analysis of patient safety incident reports from two studies conducted during the first wave of the pandemic, where we coded patient-reported incidents from the UK and clinician-reported incidents from France. The findings were presented to a focus group of experts in classification systems and patient safety, and a thematic analysis was conducted on the resultant transcript.
    We identified five key themes derived from the data analysis and expert group discussion. These included capitalising on the unique perspective of safety concerns from different groups, that existing frameworks do identify priority areas to investigate further, the objectives of a study shape the data interpretation, the pandemic spotlighted long-standing patient concerns, and the time period in which data are collected offers valuable context to aid explanation. The group consensus was that no COVID-19-specific codes were warranted, and the PISA classification system was fit for purpose.
    We have scrutinised the meaningful use of the PISA classification system\'s application during a period of systemic healthcare constraint, the COVID-19 pandemic. Despite these constraints, we found the framework can be successfully applied to incident reports to enable deductive analysis, identify areas for further enquiry and thus support organisational learning. No new or amended codes were warranted. Organisations and investigators can use our findings when reviewing their own classification systems.
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  • 文章类型: Journal Article
    研究隐秘物种时,方法论和生物学方面的考虑因素交织在一起。现代生物多样性的潜在重要组成部分,分类群体中隐蔽物种的频率没有得到很好的记录。“神秘物种”一词在科学文献中使用得不准确,在解释它们的进化和生态意义时造成歧义。这项研究回顾了神秘物种是如何定义的,讨论对分类学和生物学的影响,并根据最近发表的有关现有带壳海洋腹足类的文献进行了案例研究,探讨了这些含义。按物种记录了经过审查的腹足动物。隐匿性腹足类的记录由具有不同置信度的作者提供,但在研究工作中很难摆脱固有偏见。尽管有这些复杂性,讨论的大多数腹足动物物种都不是神秘的。在此评论的样本代表灭绝类群的程度上,结果表明,在化石记录中可以识别出很高比例的带壳海洋腹足动物物种。需要做更多的工作来更充分地了解带壳海洋腹足类中隐蔽物种的相对频率,这应该从更明确的定义和有针对性的案例研究开始。
    Methodological and biological considerations are intertwined when studying cryptic species. A potentially large component of modern biodiversity, the frequency of cryptic species among taxonomic groups is not well documented. The term \"cryptic species\" is imprecisely used in scientific literature, causing ambiguity when interpreting their evolutionary and ecological significance. This study reviews how cryptic species have been defined, discussing implications for taxonomy and biology, and explores these implications with a case study based on recently published literature on extant shelled marine gastropods. Reviewed gastropods were recorded by species. Records of cryptic gastropods were presented by authors with variable levels of confidence but were difficult to disentangle from inherent biases in the study effort. These complexities notwithstanding, most gastropod species discussed were not cryptic. To the degree that this review\'s sample represents extinct taxa, the results suggest that a high proportion of shelled marine gastropod species are identifiable for study in the fossil record. Much additional work is needed to provide a more adequate understanding of the relative frequency of cryptic species in shelled marine gastropods, which should start with more explicit definitions and targeted case studies.
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