RNA, Ribosomal, 18S

RNA,核糖体,18S
  • 文章类型: Journal Article
    在过去的六十年里,中国西北地区经历了从“温暖干燥”到“温暖潮湿”的重大气候转变,深刻影响了整个地区湖泊生态系统的结构和功能。然而,这种气候变化对多样性模式的影响,共现网络,和湖泊生态系统中真核微生物群落的组装过程,以及潜在的机制,在很大程度上仍未被探索。为了弥合这种知识差距,我们的研究集中在博斯腾湖,中国最大的内陆淡水水体,进行全面分析。首先,我们根据长期监测数据(1992-2022年)检查了湖泊中关键水质参数的动态。随后,我们收集了93个水样,跨越两个不同的时期:低水位(WL)和高总溶解固体(TDS)(PerWLTDS;2010-2011;归因于“温暖-干燥”气候),以及高WL和低TDS(PerTDSWL;2021-2022年;与“暖湿”气候相关)。使用18SrRNA基因测序和各种统计方法进一步研究了真核微生物。我们的发现表明,气候变暖和湿润显着增加了真核微生物α-多样性(所有Wilcox。试验:P<0.05),同时降低β-多样性(所有Wilcox。测试:P<0.001)和网络复杂性。通过两个采样周期,真核微生物的组装机制主要受随机过程中的分散限制(DL)和漂移(DR)的影响,与确定性过程中的同质选择(HoS)一起。WL在PerTDSWL的真核微生物DL和HoS过程中起中介作用,而水质和α-多样性影响了PerWLTDS中的DL过程。总的来说,这些结果强调了“温湿”条件对博斯腾湖内真核微生物的直接和间接影响。这项研究为在这种气候条件下湖泊生态系统的进化动态提供了宝贵的见解,并有助于预测全球气候变化的生态后果。
    Over the last six decades, northwest China has undergone a significant climatic shift from \"warm-dry\" to \"warm-wet\", profoundly impacting the structures and functions of lake ecosystem across the region. However, the influences of this climatic transition on the diversity patterns, co-occurrence network, and assembly processes of eukaryotic microbial communities in lake ecosystem, along with the underlying mechanisms, remain largely unexplored. To bridge this knowledge gap, our study focused on Lake Bosten, the largest inland freshwater body in China, conducting a comprehensive analysis. Firstly, we examined the dynamics of key water quality parameters in the lake based on long-term monitoring data (1992-2022). Subsequently, we collected 93 water samples spanning two distinctive periods: low water level (WL) and high total dissolved solids (TDS) (PerWLTDS; 2010-2011; attributed to \"warm-dry\" climate), and high WL and low TDS (PerTDSWL; 2021-2022; associated with \"warm-wet\" climate). Eukaryotic microorganisms were further investigated using 18S rRNA gene sequencing and various statistical methods. Our findings revealed that climatic warming and wetting significantly increased eukaryotic microbial α-diversity (all Wilcox. test: P<0.05), while simultaneously reducing β-diversity (all Wilcox. test: P<0.001) and network complexity. Through the two sampling periods, assembly mechanisms of eukaryotic microorganisms were predominantly influenced by dispersal limitation (DL) and drift (DR) within stochastic processes, alongside homogeneous selection (HoS) within deterministic processes. WL played a mediating role in eukaryotic microbial DL and HoS processes in the PerTDSWL, whereas water quality and α-diversity influenced the DL process in the PerWLTDS. Collectively, these results underscore the direct and indirect impacts of \"warm-wet\" conditions on the eukaryotic microorganisms within Lake Bosten. This study provides valuable insights into the evolutionary dynamics of lake ecosystems under such climatic conditions and aids in predicting the ecological ramifications of global climatic changes.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    暂无摘要。
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Case Reports
    一种新种阿米巴aeronautan。sp.在实验室研究期间从大型哺乳动物培养物中分离出来。我们对该物种的研究表明,与众所周知的物种Stenamoeba几乎具有完整的形态同一性。尽管系统发育树的形态相似性和接近性,18SrRNA基因序列的显着差异迫使我们将其识别为新物种。已知的Stenamoeba物种具有明显的形态差异,但是新物种的发现表明,在这个变形虫属以及许多其他物种中都出现了神秘的物种形成,像ThecamoebaorVannella.与许多其他变形虫属相反,可用的18SrRNA基因序列的数量超过了形态学描述的分离株。所以,尚不可能建议应用单系物种组的名称,正如最近提出的,因为Stenamoebacon的每个进化枝都包含具有已知形态和未知形态的物种序列。总的来说,本研究进一步证实,变形虫的几乎所有“经典”形态物种都可能代表同胞物种的集群,在分子水平上表现出显著的差异。
    A new speciesStenamoeba aeronautan. sp.was isolated from a culture of large thecamoebids during laboratory studies. Our study of this species showed almost complete morphological identity with the well-known speciesStenamoeba stenopodia. Despite the morphological similarity and proximity in the phylogenetic tree, significant differences in the sequence of the 18S rRNA gene forced us to recognize it as a new species. Known species ofStenamoebahave noticeable morphological differences, but the discovery of the new speciesshows that cryptic speciation appears in this amoeba genus as well as in many others, likeThecamoebaorVannella. In contrast with many other amoebae genera, the number of available 18S rRNA gene sequences exceeds that of morphologically described isolates. So, it is not yet possible to suggest the application of the names of monophyletic species groups, as it was recently proposed forThecamoebaspecies, since every clade ofStenamoebacontains both sequences of species with known morphology and with unknown ones.Overall, the present study further confirms that probably almost all \"classical\" morphospecies of amoebae may represent a cluster of a sibling species, showing remarkable differences at the molecular level.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    Linguatulaserrata是一种蠕虫状寄生虫,具有人畜共患潜力,栖息在犬科动物的鼻腔中。尽管大多数舌病病例与无特异性和相当轻微的呼吸道症状有关,据报道,动物和人类都有异常感染和严重病程的病例。在中欧和北欧,病原体过去只是偶尔出现,然而,在过去的几年中,发现的数量明显增加。2020年7月,一只大约9个月大的狗,从罗马尼亚进口,出现在哥达的兽医实践中,德国中部,由于持续恶化的咳嗽。尽管进行了抗生素治疗,但在狗吐出多个蠕虫状结构之前,咳嗽变得更加严重。这些标本中的三个被送到寄生虫学研究所(兽医学院,莱比锡大学,莱比锡)用于形态和遗传物种鉴定。后者基于线粒体细胞色素c氧化酶亚基I基因(cox1)的1000bp片段和完整的核18SrRNA基因。这项研究中提出的狗患有由居住在其上呼吸道的蠕虫状寄生虫引起的严重呼吸障碍。检测到的寄生虫在形态上被鉴定为所谓的舌虫锯缘的雌性标本,通过对产生的序列进行配对比对和系统发育分析证实了这一点。我们报告了进口犬中异常严重的锯齿乳杆菌感染病例,并讨论了这种潜在危险的寄生虫在中欧和北欧的传播。
    Linguatula serrata is a worm-like parasite with zoonotic potential that inhabits the nasal cavities of canids. Although most cases of linguatulosis are associated with unspecific and rather mild respiratory symptoms, cases of unusual infestations and severe courses in both animals and humans have been reported. In central and northern Europe, the pathogen used to appear only sporadically, however, within the last few years the number of detections has increased noticeably. In July 2020 an approximately nine-month-old dog, imported from Romania, was presented in a veterinary practice in Gotha, central Germany, due to persistent worsening cough. Despite antibiotic treatment the tussis became more severe until the dog expectorated multiple worm-like structures. Three of these specimens were sent to the Institute of Parasitology (Faculty of Veterinary Medicine, University of Leipzig, Leipzig) for morphological and genetic species identification. The latter was based on a 1000-bp fragment of the mitochondrial cytochrome c oxidase subunit I gene (cox1) and the complete nuclear 18S rRNA gene. The dog presented in this study suffered from a severe respiratory impairment caused by worm-like parasites inhabiting its upper respiratory tract. The detected parasites were morphologically identified as female specimens of the so-called tongue-worm L. serrata, which was confirmed by pairwise alignment and phylogenetic analysis of the produced sequences. We report an unusually severe case of L. serrata infection in an imported dog and discuss the spread of this potentially dangerous parasite in central and northern Europe.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Case Reports
    棘阿米巴角膜炎主要由基因型T4引起。我们报告了一例由棘阿米巴引起的严重角膜炎,该病例是一名39岁的男子,该男子先前曾意外接触过腐蚀性化学物质。患者出现中央全厚度环浸润和上皮缺损,并伴有需要进行角膜移植术。从患者分离的棘阿米巴表现出耐热性表型,具有在环境温度和42°C下生长良好的能力。对该分离株的几乎完整的18SrRNA基因的分析揭示了一个独特的序列,可以明确地将其分配给基因型T12,这是一种罕见的基因型,可导致角膜感染。
    Acanthamoeba keratitis is predominantly caused by genotype T4. We report a case of severe keratitis caused by Acanthamoeba in a 39-year-old man who had prior accidental exposure to a corrosive chemical. The patient developed central full thickness ring infiltration and epithelial defect with hypopyon that required keratoplasty. The acanthamoebae isolated from the patient exhibited thermotolerance phenotype with the capability to grow well at ambient temperature and at 42°C. Analysis of a near complete 18S rRNA gene of this isolate revealed a distinct sequence that can be unequivocally assigned to genotype T12, a rare genotype incriminated in corneal infections.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    Myzus persicae is a globally important pest with the ability to adjust to a wide range of environmental situations, and many molecular technologies have been developed and applied to understand the biology and/or control this pest insect directly. Reverse-transcription quantitative real-time PCR (RT-qPCR) is a primary molecular technology that is used to quantify gene expression. Choosing a stable reference gene is significantly important for precisely clarifying the expression level of the target gene. Actin and 18S have been recommended as stable compounds for real-time RT-qPCR in M. persicae under the tested biotic and abiotic conditions. In this study, we checked the stability of Actin and 18S by analyzing the relative expression levels of the cytochrome 450 monooxygenase family member genes CYP6CY3 and CYP6-1, carboxylesterase gene E4 and vacuolar protein sorting gene VPS11 via RT-qPCR under various conditions. The expression levels of these four target genes were normalized using both Actin and 18S individually and the combination of these two genes. Our results confirmed that Actin and 18S can be used as reference genes to normalize the expression of target genes under insecticide treatment and starvation in M. persicae. However, at the developmental stages of M. persicae, the expression of the four tested target genes was normalized stably by Actin but not 18S, with the latter presenting a problematic change with the developmental stages. Thus, the stability of reference genes in response to diverse biotic and abiotic factors should be evaluated before each RT-qPCR experiment.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Case Reports
    One dead 6-wk-old male racing pigeon (Columba livia) was submitted for postmortem evaluation after presenting with weight loss, anorexia, dry shanks, dehydration, and lethargy. The bird belonged to a confined flock with 12 other pigeons raised by a hobbyist. Two pigeons in the flock reportedly had died with a history of similar clinical signs. On gross examination, the liver and the spleen were diffusely dark brown to black. Histopathology revealed moderate to large amounts of anisotropic, intracytoplasmic black pigment, compatible with hemozoin, in the spleen, liver, lung, and kidneys, with small amounts in the heart and meninges of the brain. Marked plasmacytic infiltrates were observed in liver, lungs, heart, and kidneys. Blood smears from a clinically affected concomitant pigeon from the flock revealed numerous light-blue, round to oval, intraerythrocytic trophozoites and meronts suggestive of Plasmodium spp. PCR and sequencing tests were performed from spleen and ceca with fragments of the 18S ribosomal RNA and the mitochondrial cytochrome b (cytB) genes. Sequencing results confirmed the presence of Plasmodium in the affected pigeon. Although an exact genetic match could not be determined, the most similar species to the isolate from this study are Plasmodium relictum, Plasmodium matutinum, Plasmodium lutzi, and Plasmodium homocircumflexum.
    Reporte de caso—Reporte de un caso de malaria aviar (Plasmodium spp.) en palomas criadas en corrales (Columba livia) Una paloma mensajera macho de 6 semanas muerta (Columba livia) fue remitido a evaluación post mortem después de presentar pérdida de peso, anorexia, patas secas, deshidrataciœn y letargo. El pájaro pertenecía a una parvada confinada con otras 12 palomas criadas por un criador aficionado. Dos palomas de la parvada habían muerto con antecedentes de signos clínicos similares. En el examen macroscópico, el hígado y el bazo se observaron de color marrón oscuro a negro. La histopatología reveló cantidades moderadas a abundantes de pigmento negro intracitoplasmático y anisotrópico, compatible con hemozoína, en el bazo, hígado, pulmón y riñones, con pequeñas cantidades en el corazón y en las meninges del cerebro. Se observaron marcados infiltrados plasmocíticos en hígado, pulmones, corazón y riñones. Los frotis de sangre de otra paloma clínicamente afectada de la parvada revelaron numerosos trofozoítos intraeritrocíticos y esquizontes de color azul claro, redondos a ovalados, que sugerían Plasmodium spp. Se realizaron pruebas de PCR y secuenciación a partir del bazo y el ciego con fragmentos de los genes de ARN ribosómico 18S y del citocromo b mitocondrial (cytB). Los resultados de la secuenciación confirmaron la presencia de Plasmodium en la paloma afectada. Aunque no se pudo determinar una identidad genética exacta, las especies más similares al aislado de este estudio son Plasmodium relictum, Plasmodium matutinum, Plasmodium lutzi y Plasmodium homocircumflexum.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Case Reports
    囊胚菌属的肠外感染。很少被记录在案。这里,我们报告了1例肠外囊胚形成的病例,患者的症状轻微的宫颈炎。一名47岁的西班牙裔女性患者在米却肯州的初级保健中心接受了治疗,墨西哥,她的常规妇科体检.作为唯一的症状,她指的是轻微的阴道瘙痒。囊胚属的几个液泡阶段的存在。通过Papanicolaou染色鉴定;通过对细胞学检查2个月后获得的宫颈和粪便样品中的18S基因区域进行培养-PCR测序,尝试进行分子鉴定,即使当患者宣布她尝试用阴道胚珠自我治疗时。仅在粪便样品中鉴定出囊胚ST1。囊胚的存在。在症状稀少的患者的子宫颈中,展示了这种微生物适应新环境和生态位的非凡灵活性。
    Extra-enteric infections by Blastocystis spp. have rarely been documented. Here, we report a case of extra-enteric blastocystosis in a patient with minimal cervicitis symptoms. A 47-year-old Hispanic female patient was attended in a primary health centre in Michoacan state, Mexico, for her routine gynaecological medical examination. As only symptom, she referred to a slight vaginal itching. The presence of several vacuolar-stages of Blastocystis spp. were identified by Papanicolaou staining; molecular identification was attempted by culture-PCR sequencing of a region of 18S gene from cervical and faecal samples obtained 2 months after cytological examination, even when patient declared that she tried self-medicating with vaginal ovules. Blastocystis ST1 was identified only in the faecal sample. The presence of Blastocystis spp. in the cervix of a patient with scarce symptomatology, demonstrates the extraordinary flexibility of this microorganism to adapt to new environments and niches.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Case Reports
    Vector-borne pathogens are responsible for serious emerging diseases and Rangelia vitalii, the etiologic agent of canine rangeliosis, is one of the most pathogenic tick-borne pathogens for dogs in South America. This protozoan is transmitted by the Amblyomma aureolatum tick bite and the clinical features associated to the disease are fever, hemolytic anemia, jaundice, hepatosplenomegaly and bleeding from natural orifices, mainly from the ear egde. The reports of canine rangeliosis in Argentina are scarce. In the present study we report the detection of Rangelia vitalii in a naturally infected dog from Gualeguay, Entre Ríos, Argentina with history of tick infestation and clinical signs compatible with rangeliosis. An initial blood sample was positive to piroplasmids by blood smear examination and the molecular amplification of a fragment of the 18SrRNA gene. Sequencing of the fragment confirmed the pathogen identity. After treatment with imidocarb dipropionate, the clinical signs remitted and the blood smear tested negative.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Sci-hub)

  • 文章类型: Journal Article
    直到最近,似乎可以使用光学显微镜特征可靠地识别出Tecamoeba属的变形虫,比如细胞的大小和形状,褶皱和脊的特征图案和核的结构。然而,最近的分子研究表明,仅根据基因序列数据可以可靠地区分同胞物种的存在。这里我们描述了一种新的陆地物种,叶阿米巴n.sp.在光学显微镜下,该物种几乎与Thecamoebasimilis相同,超微结构差异较小,但SSUrRNA基因序列差异很大。我们调查了光学显微镜数据,以及T.similis1583/8型菌株的透射电子显微镜图像和录像带,并与新物种进行了比较。这项研究进一步支持了这样的结论,即如今的皮卡米巴属物种需要基因测序才能进行可靠的鉴定和物种区分。
    Until recently it seemed that amoebae of the genus Thecamoeba can be reliably identified using light-microscopic characters, like the size and shape of the cell, a characteristic pattern of folds and ridges and structure of the nucleus. However, recent molecular studies show the presence of sibling species that can be reliably distinguished based on the gene sequence data only. Here we describe a new terrestrial species, Thecamoeba foliovenanda n. sp. This species is almost identical with Thecamoeba similis in light-microscopy, which has minor differences in the ultrastructure but considerable differences in the SSU rRNA gene sequence. We investigated the light-microscopic data, as well as transmission electron-microscopic images and videorecords on the type strain of T. similis 1583/8 and performed its comparison with the new species. This study further supports the conclusion that species of the genus Thecamoeba nowadays require gene sequencing for reliable identification and species distinction.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Sci-hub)

公众号