Morphometry

形态计量学
  • 文章类型: Journal Article
    形态计量学是研究和关联神经元形态与脑功能的基础。随着计算能力的提高,可以自动提取形态特征,包括长度等特征,volume,和神经元分支的数量。然而,据我们所知,还没有形态测量工具的绘图。在这种情况下,我们进行了系统的搜索和审查,以识别和分析神经元分析范围内的工具。因此,这项工作遵循了一个明确的协议,并试图回答以下研究问题:哪些开源工具可用于神经元形态分析?这些工具提取了哪些形态特征?为此,旨在提高鲁棒性和覆盖率,该研究基于论文分析以及使用存储库中可用工具对文档和测试的研究。我们分析了1586篇论文,绘制了23种工具,其中NeuroM,L-Measure,神经形态血管提取了最多的特征。此外,我们以前所未有的方式呈现150种独特的形态计量学特征,为知识体系做出了贡献,这些特征的术语被分类和标准化。总的来说,这项研究有助于提高对大脑复杂机制的理解。
    Morphometry is fundamental for studying and correlating neuronal morphology with brain functions. With increasing computational power, it is possible to extract morphometric characteristics automatically, including features such as length, volume, and number of neuron branches. However, to the best of our knowledge, there is no mapping of morphometric tools yet. In this context, we conducted a systematic search and review to identify and analyze tools within the scope of neuron analysis. Thus, the work followed a well-defined protocol and sought to answer the following research questions: What open-source tools are available for neuronal morphometric analysis? What morphometric characteristics are extracted by these tools? For this, aiming for greater robustness and coverage, the study was based on the paper analysis as well as the study of documentation and tests with the tools available in repositories. We analyzed 1,586 papers and mapped 23 tools, where NeuroM, L-Measure, and NeuroMorphoVis extract the most features. Furthermore, we contribute to the body of knowledge with the unprecedented presentation of 150 unique morphometric features whose terminologies were categorized and standardized. Overall, the study contributes to advancing the understanding of the complex mechanisms underlying the brain.
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  • 文章类型: Journal Article
    了解距骨颈的三维解剖结构对于评估距骨颈骨折复位的准确性以及计划距骨畸形的手术矫正至关重要。然而,描述这种解剖结构的几何参数在骨科文献中很少报道。我们的目的是从现有的文献中找出,描述距骨颈部解剖结构的几何参数,确定这些是如何测量的,和他们的规范价值观。根据系统审查和荟萃分析(PRISMA)扩展范围审查(PRISMA-ScR)指南的首选报告项目进行范围审查。主要搜索是在PubMed上进行的,Embase,和Scopus数据库。包括观察人类距骨颈部几何形状的任何原始研究研究。确定了描述距骨颈解剖结构的参数,和汇总估计值由随机效应荟萃分析模型确定。异质性通过I2检验和留一法荟萃分析进行评估。进行亚组分析以比较亚洲和非亚洲人群之间的参数值。偏见的风险由美国国立卫生研究院(NIH)病例系列工具评估。组合搜索产生了6326个结果,其中21项研究被纳入综述,15项被纳入六组不同的元分析。大多数研究(n=19,90.5%)评估了成人塔利,只有两个(9.5%)评估了小儿距骨。在大多数研究中(n=13,61.9%),在干骨或解剖标本上评估距骨颈几何形状;通过成像技术评估(X光片,CT,MRI,和放射立体测量分析)被用于八项研究,(39.1%)。总共八个不同的几何参数(颈部长度,高度,宽度,偏角,倾角,扭转角,周长,和横截面积)被识别。除了距骨扭转,所有其他参数的测量方法均存在差异.亚组分析显示,与非亚洲人相比,亚洲人的颈部高度更高;其他参数没有显着差异。尽管文献报道了评估距骨几何形状的几何参数,这些参数的测量方法是可变的。大多数现有文献描述了尸体上的测量技术,并且没有关于如何在常规CT或MRI切片上测量这些参数的文献。进一步的研究需要集中在常规CT和/或MRI扫描上这些参数的测量技术的标准化上。
    Understanding the three-dimensional anatomy of the talar neck is essential in assessing the accuracy of reduction in talar neck fractures as well as for planning surgical correction for talar malunions. However, the geometrical parameters that describe this anatomy are sparsely reported in the orthopedics literature. We aimed to identify from the existing literature, geometrical parameters that describe the anatomy of the talar neck, determine how these are measured, and their normative values. A scoping literature review was conducted in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) extension for scoping reviews (PRISMA-ScR) guidelines. The primary searches were conducted on the PubMed, Embase, and Scopus databases. Any original research study looking at the human talus neck geometry was included. Parameters that described the anatomy of the talar neck were identified, and pooled estimates were determined by the random-effects meta-analysis model. Heterogeneity was assessed by the I2 test and leave-one-out meta-analysis. Subgroup analysis was done to compare the values of parameters between the Asian and Non-Asian populations. The risk of bias was assessed by the National Institutes of Health (NIH) Case Series Tool. The combined searches yielded 6326 results, of which 21 studies were included in the review and 15 in six different sets of metanalysis. The majority of the studies (n=19, 90.5%) evaluated adult tali, and only two (9.5%) evaluated pediatric tali. In most of the studies (n=13, 61.9%), talus neck geometry was evaluated on dry bones or anatomical specimens; evaluation by imaging techniques (radiographs, CT, MRI, and radiostereometric analysis) was used in eight studies, (39.1%). A total of eight different geometrical parameters (neck length, height, width, declination angle, inclination angle, torsion angle, circumference, and cross-sectional area) were identified. Except for talar torsion, variability was noted in methods of measurement of all other parameters. Subgroup analysis revealed that Asians had a higher neck height as compared to non-Asians; other parameters were not significantly different. Although the literature reports geometrical parameters to assess the talar geometry, the methods of measurement of these parameters are variable. Most of the available literature describes measurement techniques on cadaveric tali, and there is no literature on how these parameters should be measured on conventional CT or MRI slices. Further research needs to focus on the standardization of measurement techniques for these parameters on conventional CT and/or MRI scans.
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  • 文章类型: Journal Article
    在转化动物研究中,旨在评估创新方法治疗脑卒中的有效性,包括再生细胞技术,特别重要的是评估治疗后脑梗死体积变化的动力学。在评估梗死灶的方法中,MRI是用于临床前研究的最有效和最方便的工具。这篇综述描述了用于可视化脑缺血发展各个阶段的MR脉冲序列,并详细描述了脑梗死的MR符号学。脑梗塞病灶形态计量学分析的各种方法的比较,包括基于人工智能的系统,用于更客观地测量病变的体积,也提出了。
    In translational animal study aimed at evaluation of the effectiveness of innovative methods for treating cerebral stroke, including regenerative cell technologies, of particular importance is evaluation of the dynamics of changes in the volume of the cerebral infarction in response to therapy. Among the methods for assessing the focus of infarction, MRI is the most effective and convenient tool for use in preclinical studies. This review provides a description of MR pulse sequences used to visualize cerebral ischemia at various stages of its development, and a detailed description of the MR semiotics of cerebral infarction. A comparison of various methods for morphometric analysis of the focus of a cerebral infarction, including systems based on artificial intelligence for a more objective measurement of the volume of the lesion, is also presented.
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  • 文章类型: Systematic Review
    目的:本系统综述的目的是评估腓肠神经超声检查在诊断糖尿病(DM)和糖尿病性多发性神经病(DPN)中的作用。后者是糖尿病患者常见的长期并发症,经常累及腓肠神经。
    方法:对健康个体和糖尿病患者的腓肠神经横截面积(CSAs)进行荟萃分析,基于2015年至2023年的32项超声检查研究。对地理位置和测量地点等因素进行了分分析。
    结果:荟萃分析显示,与所有地区的健康个体相比,仅DPN的DM患者的腓肠神经平均CSA明显更大。当将儿科人群与成年人进行比较时,健康腓肠神经的CSA的年龄依赖性增加是显而易见的。
    结论:腓肠神经超声检查可以根据横截面面积测量将糖尿病成人与健康成人区分开来。未来的研究需要澄清其他参数之间的关系,比如身体指标和年龄,腓肠神经CSA。DPN的截止日期可能需要特定于不同的地理区域。
    OBJECTIVE: The aim of this systematic review is to evaluate the usefulness of sural nerve ultrasonography in diagnosing diabetes mellitus (DM) and diabetic polyneuropathy (DPN), the latter of which is a common long-term complication for diabetic patients that frequently involves the sural nerve.
    METHODS: A meta-analysis of the cross-sectional areas (CSAs) of sural nerves in healthy individuals and patients with diabetes mellitus based on a total of 32 ultrasonographic-based studies from 2015 to 2023 was performed. Sub-analyses were performed for factors such as geographical location and measurement site.
    RESULTS: The meta-analysis showed that the mean CSA of the sural nerve was significantly larger in DM patients with DPN only compared to healthy individuals across all regions and when pooled together. An age-dependent increase in the CSA of healthy sural nerves is apparent when comparing the paediatric population with adults.
    CONCLUSIONS: Sural nerve ultrasonography can distinguish diabetic adults with DPN from healthy adults based on cross-sectional area measurement. Future studies are needed to clarify the relationships between other parameters, such as body metrics and age, with sural nerve CSAs. Cut-offs for DPN likely need to be specific for different geographical regions.
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  • 文章类型: Journal Article
    形成威利斯环(CW)的动脉形态测量的全面数据对于放射学和神经外科干预至关重要。进行了这项系统评价,目的是找到大脑前动脉(ACA)的长度和直径的有效范围,并观察ACA的长度和直径是否因年龄或性别而异。本系统综述考虑了通过尸体或放射学等任何研究模式基于ACA长度和直径的文章。使用Cochrane图书馆数据库进行全面的文献检索,PubMed,和Scopus做了相关文章。选择回答重点问题的研究论文进行数据分析。据观察,ACA的长度和直径范围为8.1毫米-21毫米和0.5µ-3.4毫米,分别。在大多数研究中,ACA的长度和直径在年轻年龄组(>40岁)更多;女性ACA的长度更多,而男性ACA的直径更多。这些数据将适用于更好地构建和解密血管造影图像。这将有助于颅内病理的正确和指导治疗。
    Thorough data of morphometric measurements of arteries forming Circle of Willis (CW) is crucial for radiological and neurosurgical interventions. This systematic review has been conducted with the objective to find an effective range of length and diameter of anterior cerebral artery (ACA) and to observe whether there is any change in the length and diameter of ACA depending on age or sex. Articles based on length and diameter of ACA via any mode of study like cadaveric or radiological were considered in this systematic review. A comprehensive literature search using databases Cochrane Library, PubMed, and Scopus for relevant articles was done. Research papers which answered the focused questions were selected for data analysis. It was observed that the range of length and diameter of ACA were 8.1 mm-21 mm and 0.5 Å-3.4 mm, respectively. In majority of the studies, length and diameter of ACA were more in the younger age group (>40 years); and the length of ACA was more in females whereas the diameter of ACA was more in males. These data will be applicable for better construction and decipherment of angiographic images. This will help in the proper and guided treatment of intracranial pathologies.
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  • 文章类型: Journal Article
    小LumbrineridaGallardonerisibericaMartins,卡雷拉-帕拉,Quintino&Rodrigues,2012年最初被描述为基于葡萄牙水域标本的科学新事物。然后,从几个南欧地区相继报道,包括西班牙,意大利,希腊,塞浦路斯。这里有证据表明,G.iberica应与LumbrinerisnonatoiRamos同义,1976年,最初来自西北地中海水域,符合Gallardoneris诊断的物种。根据西北地中海的法国海岸的标本,本文(1)使用新组合Gallardonerisnonatoi(Ramos,1976)和(2)提供了其主要形态特征的形态计量学分析。缺乏G.nonatoicomb的最新报道。11月。在地中海水域中,大概是由于最近根据墨西哥湾的标本将该物种重新描述为L.nonatoi。然而,这些标本属于腰椎,如目前定义。通过评估它们的形态差异,得出的结论是,来自墨西哥湾的标本代表了一个不同的新物种,即Lumbrinerisjansp.11月。还讨论了腰椎的可能分配,1990年,从卡塔尼亚湾(地中海)到Gallardoneris的原始描述以来,鲜为人知的物种很少记录,以及它是否是有效的物种,或者可能是G.nonatoicomb的其他初级同义词。11月。
    The small LumbrineridaeGallardonerisiberica Martins, Carrera-Parra, Quintino & Rodrigues, 2012 was first described as new to science based on specimens from Portuguese waters. Then, it was successively reported from several south European areas, including Spain, Italy, Greece, and Cyprus. Here evidence is presented that G.iberica should be placed in synonymy with Lumbrinerisnonatoi Ramos, 1976, originally described from NW Mediterranean waters, a species that fits with the diagnosis of Gallardoneris. Based on specimens from the French coasts of the NW Mediterranean, this paper (1) redescribes the species using the new combination Gallardonerisnonatoi (Ramos, 1976) and (2) provides a morphometric analysis of its main morphological characters. The lack of recent reports of G.nonatoi comb. nov. in Mediterranean waters is presumably due to the recent redescription of the species as L.nonatoi based on specimens from the Gulf of Mexico. However, these specimens belong to Lumbrineris, as currently defined. By assessing their morphological differences, it is concluded that the specimens from the Gulf of Mexico represent a different and new species, namely Lumbrinerisjan sp. nov. Also discussed is the possible assignation of Lumbrinerislongipodiata Cantone, 1990, a poorly known species seldom recorded since its original description from the Gulf of Catania (Mediterranean Sea) to Gallardoneris, as well as on whether it is a valid species or may be an additional junior synonym of G.nonatoi comb. nov.
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  • 文章类型: Meta-Analysis
    背景:已经报道了大量股骨髁矢状形态的解剖变异,在球形(或单半径)和卵形(或多半径)髁之间具有连续体。本系统综述和荟萃分析的目的是批判性地评估和综合有关矢状股骨轮廓的现有文献。假设是,研究将揭示个体之间相当大的差异,而且在他们量化矢状轮廓的方法中。
    方法:本系统评价按照系统评价和荟萃分析(PRISMA)指南的首选报告项目进行。2021年9月10日,两位作者使用MEDLINE®搜索了I至IV级研究,这些研究报告了股骨内侧和/或外侧髁的矢状曲率。EMBASE®和Cochrane图书馆。结果以表格方式汇总,报告的曲率半径的标准偏差和/或范围,或椭圆体的半大和半小长度的髁。为了量化矢状面的“Ovoidicity”和不对称性,结果根据坐标参考框架(后髁轴(PCA),临床和外科经上髁轴(cTEA和sTEA),统一矢状面(USP),或不清楚),并在森林地块中总结为标准化平均差异(SMD)。
    结果:38篇文章符合全文抽取条件,通过最佳拟合圆(BFC)量化矢状曲率半径,椭圆体,多项式,球形或圆柱形配件。对测量平面有明确定义的研究表明,两个髁通常都是卵圆形的,在内侧髁处具有相当大的“卵性”(SMD,4.09)与外侧髁(SMD,3.33).此外,当与TEA正常测量时,髁突远端半径内侧更大(cTEA:SMD,0.81;sTEA:SMD,0.79),但在USP中测量时横向更大(SMD,-0.83)。在USP中测量时,后髁半径横向更大(SMD,-0.60)。
    结论:研究报告了股骨髁的矢状曲率半径的相当大的变异性,它们不是增量的,而是一个从球形到卵形的连续体。虽然这种变化可以通过单一的,双半径和多半径股骨组件,外科医生通常仅使用一个或两个TKA设计。因此,天然矢状面和假体矢状面之间存在不匹配的风险,这可能导致中屈曲韧带失衡,除非改变其他参数.这些发现支持了对患者特定植入物的驱动,以通过植入物定制实现准确的矢状骨-植入物配合。
    方法:IV.
    BACKGROUND: Considerable anatomic variations of sagittal femoral condylar shape have been reported, with a continuum between spherical (or single-radius) and ovoid (or multi-radius) condyles. The purpose of this systematic review and meta-analysis was to critically appraise and synthesise the available literature on the sagittal femoral profile. The hypothesis was that studies would reveal considerable variability among individuals, but also in their methodology to quantify sagittal profiles.
    METHODS: This systematic review was performed in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. On 10 September 2021 two authors searched for Level I to IV studies that reported on the sagittal curvature of the medial and/or lateral femoral condyles using the MEDLINE®, EMBASE® and Cochrane Library. Results were summarised by tabulating means, standard deviations and/or ranges for the reported radii-of-curvature, or ellipsoidal semi-major and semi-minor lengths of the condyles. To quantify sagittal \'ovoidicity\' and asymmetry, results were stratified according to coordinate reference frame (posterior condylar axis (PCA), clinical and surgical transepicondylar axis (cTEA and sTEA), unified sagittal plane (USP), or unclear) and summarised in forest plots as standardised mean differences (SMD).
    RESULTS: Thirty-eight articles were eligible for full text extraction, quantifying sagittal radii-of-curvature by best-fit circles (BFC), ellipsoids, polynomials, spherical or cylindrical fitting. Studies with clear definition of the measurement plane revealed that both condyles were generally ovoid, with considerably greater \'ovoidicity\' at the medial condyle (SMD, 4.09) versus the lateral condyle (SMD, 3.33). In addition, distal condylar radii were greater medially when measured normal to the TEA (cTEA: SMD, 0.81; sTEA: SMD, 0.79), but greater laterally when measured in a USP (SMD, - 0.83). Posterior condylar radii were greater laterally when measured in a USP (SMD, - 0.60).
    CONCLUSIONS: Studies reported considerable variability of sagittal femoral condylar radii-of-curvature, which are not incremental, but rather a continuum that ranges from spherical to ovoid. Although this variation could be accommodated by single-, dual- and multi-radii femoral components, a surgeon typically uses only one or two TKA designs. Hence, there is a risk of mismatch between the native and prosthetic sagittal profile that could result in mid-flexion ligament imbalance unless other parameters are changed. These findings support the drive towards patient-specific implants to potentially achieve accurate sagittal bone-implant fit through implant customisation.
    METHODS: IV.
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  • 文章类型: Review
    肝外胆道树成分的形态计量学和形态显示出广泛的差异。事先识别这些变化对于在该区域进行手术时防止意外并发症非常关键。这项研究是为了分析肝外胆管树的构型及其可能的变异,以及测量限制囊肝三角的成分。在主要的在线索引数据库(Medline和PubMed,Scopus,Embase,CINAHLPlus,WebofScience和GoogleScholar)使用相关关键词。共有73篇文章符合搜索标准,其中55篇文章被确定用于数据提取。在大多数研究中,发现左和右肝导管的长度>10毫米。在5-43mm之间观察到宽范围的肝管直径。胆囊管的平均长度约为20mm。胆总管的长度和直径分别为50-150mm和3-9mm。最常见的胆囊管插入肝总管的模式是右外侧,很少前,或后螺旋插入可以存在。这项研究的结果将提供一个标准的参考范围,而这将有助于区分正常和病理状况。
    The morphometry and morphology of the components of extrahepatic biliary tree show extensive variations. A beforehand recognition of these variations is very crucial to prevent unintended complications while performing surgeries in this region. This study was conducted to analyse the configuration of the extrahepatic biliary tree and its possible variations, as well as measure the components that limit the cystohepatic triangle. Articles were searched in major online indexed databases (Medline and PubMed, Scopus, Embase, CINAHL Plus, Web of Science and Google Scholar) using relevant key words. A total of 73 articles matched the search criteria of which 55 articles were identified for data extraction. The length of left and right hepatic duct in majority of studies was found to be > 10 mm. A wide range of diameters of hepatic ducts were observed between 5 and 43 mm. The average length of cystic duct is around 20 mm. The length and diameter of the common bile duct are 50-150 mm and 3-9 mm, respectively. The most frequently observed pattern of insertion of cystic duct into common hepatic duct is right lateral, rarely anterior, or posterior spiral insertion can present. The results of this study will provide a standard reference range which instead will help to differentiate the normal and pathological conditions.
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  • 文章类型: Journal Article
    在过去的三十年里,皮肤穿刺活检已成为诊断小纤维神经病的金标准,包括糖尿病患者常见的自主神经病变,HIV患者,和遗传性感觉自主神经神经病和毒素诱发的神经病的儿童。临床,生物化学,电生理测试尚无定论,很难诊断和开始治疗。在门诊很容易进行皮肤穿刺活检,高度敏感,并提供客观诊断。重要的是,它有助于避免对小纤维神经病变患者进行侵入性神经活检,从而防止并发症,如活检部位不愈合,这在这些患者中很常见。其次,皮肤穿刺活检的最大优点是它们可以重复任何次数,不像神经活检,并可用于评估疾病进展和治疗反应。最近,它的用途已经扩展到大纤维神经病的诊断,遗传性脱髓鞘神经病,等。,避免了神经活检的需要.欧洲神经学会联合会已经公布了评估指南,以确保活检部位的一致性。processing,和量化。皮肤活检的评估包括通过亮场显微镜使用PGP9.5免疫染色切片对表皮内神经纤维密度进行形态测量评估。这篇综述着重于皮肤穿刺活检的实践方面及其对执业病理学家的实用性。
    Over the last three decades, skin punch biopsy has become the gold standard for diagnosis of small fiber neuropathies, including autonomic neuropathies commonly seen in diabetics, patients with HIV, and children with hereditary sensory autonomic neuropathies and toxin-induced neuropathy. Clinical, biochemical, electrophysiological tests are inconclusive, making it difficult to diagnose and initiate treatment. A skin punch biopsy is easy to perform in the outpatient clinic, is highly sensitive, and provides an objective diagnosis. Importantly, it helps avoid performing invasive nerve biopsy in patients with small fiber neuropathy, thereby preventing complications such as non-healing of the biopsy site, which is common in these patients. Secondly, the greatest advantage of skin punch biopsies is that they can be repeated any number of times, unlike a nerve biopsy, and are useful to evaluate disease progression and therapeutic response. More recently, its use has been expanded to the diagnosis of large fiber neuropathies, inherited demyelinating neuropathies, etc., obviating the need for a nerve biopsy. The European Federation of Neurological Societies has published guidelines for evaluation to ensure uniformity with regard to the site of biopsy, processing, and quantification. The evaluation of the skin biopsy involves morphometric assessment of the intraepidermal nerve fiber density using PGP 9.5 immunostained sections by bright-field microscopy. This review focuses on the practical aspects of skin punch biopsy and its utility for the practicing pathologist.
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  • 文章类型: Journal Article
    重金属,包括铅和锰,空气污染,杀虫剂,环境烟草烟雾,和阻燃剂是已知和可疑的环境神经毒物暴露与磁共振成像(MRI)为基础的儿科人群的研究检查。许多研究以与暴露相关的形态变化为特征,而其他研究则采用磁共振波谱学,扩散成像,基于任务,和静息状态功能磁共振成像来揭示异常的代谢浓度,白质无序,和非典型的激活模式。一些研究跟踪孕妇及其后代的整个生命周期,收集个体标本作为暴露生物标志物。其他人则创新地利用公共数据库来获取相关的暴露生物标志物,同时利用这些研究来监测大型,以人口为基础,成像队列。由于子宫内和整个儿童时期接触神经毒物会对健康和福祉产生终身影响,这些创新的神经影像学研究的重要性日益增加.
    Heavy metals, including lead and manganese, air pollution, pesticides, environmental tobacco smoke, and flame retardants are among the known and suspected environmental neurotoxicant exposures examined with magnetic resonance imaging (MRI)-based studies of pediatric populations. Many studies feature morphological changes associated with the exposures while others employ magnetic resonance spectroscopy, diffusion imaging, task-based, and resting state functional magnetic resonance imaging to reveal abnormal metabolic concentrations, white matter disorganization, and atypical patterns of activation. Some studies follow pregnant women and their offspring throughout the lifespan with collection of individual specimens as exposure biomarkers. Others innovatively make use of public databases to obtain relevant exposure biomarkers while taking advantage of these studies in their efforts to monitor developmental features in large, population-based, imaging cohorts. As exposures to neurotoxicants in the womb and throughout childhood have life-long impacts on health and well-being, the importance of these innovative neuroimaging investigations is ever increasing.
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