Morphometry

形态计量学
  • 文章类型: Journal Article
    扫描电子显微镜(SEM)的发明推动了成像方法,并允许以高分辨率观察细胞细节。目前,SEM似乎是分析生物样品形态的非常有用的工具。本文的目的是为使用SEM分析原核和真核细胞的形态提供一套指南,以大肠杆菌和B-35大鼠神经母细胞瘤细胞为模型。在这里,我们讨论了仔细制备样品的必要性,并提供了一个优化的方案,该方案允许以最小的处理努力观察细胞超微结构(≥50nm)的细节。突出形态计量学描述符的多功能性,我们提供了信息最丰富的参数,并将它们与分子过程耦合。这样,我们指出了可以通过生物材料的SEM成像收集的广泛信息,这使得SEM成为检测细胞病理学的便捷筛选方法。
    The invention of a scanning electron microscopy (SEM) pushed the imaging methods and allowed for the observation of cell details with a high resolution. Currently, SEM appears as an extremely useful tool to analyse the morphology of biological samples. The aim of this paper is to provide a set of guidelines for using SEM to analyse morphology of prokaryotic and eukaryotic cells, taking as model cases Escherichia coli bacteria and B-35 rat neuroblastoma cells. Herein, we discuss the necessity of a careful sample preparation and provide an optimised protocol that allows to observe the details of cell ultrastructure (≥ 50 nm) with a minimum processing effort. Highlighting the versatility of morphometric descriptors, we present the most informative parameters and couple them with molecular processes. In this way, we indicate the wide range of information that can be collected through SEM imaging of biological materials that makes SEM a convenient screening method to detect cell pathology.
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  • 文章类型: Evaluation Study
    评估鱼肝状态在水产养殖营养测定中很常见。这通常意味着确定常规薄(5-7μm)组织学切片中的肝细胞分布区域。然而,在薄切片中使用平面形态测量法存在理论问题:固有的采样细胞偏差,采样的细胞数量太少了,低估/高估尺寸,当细胞是三维(3D)实体时,测量大小作为面积。评估/验证细胞大小的黄金标准是使用厚切片(20-40μm)的立体学。这里,我们通过成核剂和光学解剖体视学探针(厚切片)估计肝细胞及其细胞核的体积,and,创新,在薄切片中也是如此(使用单切片切片器)。目标是食用含有低或高脂质水平的鲤鱼饲料的肝脏。使用薄切片将结果与平面形态测量的先前轮廓区域进行比较,并在此处使用二维(2D)成核器估算轮廓面积。计算并比较细胞核与细胞/细胞质(N/C)面积和体积之间的比率。薄切片和厚切片的体积之间存在高度正相关(r=.85至.89;p<.001),对单节数据进行了实证验证。轮廓衍生面积与2D成核面积之间存在很强的相关性(r=.74至.83;p<.001)。使用平面形态测量法系统地低估了细胞和细胞核的大小。从2D成核剂数据得出的N/C比高于平面形态计量学得出的N/C比。尽管在薄切片中使用简单平面形态计量学的理论前提存在缺陷,我们的结果支持,这种形态计量学对鲤鱼/鱼肝细胞可能提供一些有效的生物学结论。不管怎样,我们提出了实施适当方法的指导方针。
    Assessing fish liver status is common in aquaculture nutrition assays. This often implies determining hepatocytes profile areas in routine thin (5-7 μm) histological sections. However, there are theoretical problems using planar morphometry in thin sections: inherent sampling cells biases, too small numbers of sampled cells, under/overestimation of size, measuring size as areas when cells are three-dimensional (3D) entities. The gold standard for assessing/validate cell size is stereology using thick sections (20-40 μm). Here, we estimated the volume of hepatocytes and their nuclei by the nucleator and optical disector stereological probes (in thick sections), and, innovatively, in thin sections too (using single-section disectors). The liver of common carp eating feed containing either low or high level of lipids was targeted. Results were compared with prior profile areas from planar morphometry using thin sections, and with profile areas estimated here with the two-dimensional (2D) nucleator. Ratios between nucleus and cell/cytoplasm (N/C) areas and volumes were calculated and compared. There was high positive correlation between volumes in thin and thick sections (r = .85 to .89; p < .001), empirically validating the single-section disector. Strong correlations existed between profile-derived versus 2D-nucleator areas (r = .74 to .83; p < .001). There was systematic underestimation of cells and nucleus size using planar morphometry. The N/C ratios derived from the 2D-nucleator data were higher than those from planar morphometry. Despite theoretical premises for using simple planar morphometry in thin sections are flawed, our results support that such morphometry on carp/fish hepatocytes may offer some valid biological conclusions. Anyway, we advanced guidelines for implementing proper methods.
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  • 文章类型: Journal Article
    环境化学品的发育神经毒性(DNT)的潜力可以使用美国环境保护署或经济合作与发展组织(OECD)的特定测试指南进行评估。这些指南产生神经行为,神经病理学,和由全球监管机构评估的形态计量数据。这些DNT指南研究的数据,或者最近的经合组织扩展了一代生殖毒性指南,在世界不同地区的儿童健康风险评估中发挥着举足轻重的作用。来自同一研究的数据可能会被不同国家的监管当局解释不同,导致评估不一致,可能导致国际风险评估决策不一致。导致公共卫生保护或商业贸易壁垒的地区差异。这些数据解释和报告问题也与针对药品和兽药更常规地进行的青少年和产后研究有关。有必要制定针对监管科学审查员的业务需求的建议,他们将这些研究应用于风险评估,以及生成DNT数据集的科学家。这里总结的研讨会借鉴了代表政府的作者的经验,工业,合同研究组织,和学术界讨论从不同的监管评估中出现的科学问题。尽管各监管机构有不同的风险管理决策和标签要求,难以统一,研讨会提供了一个机会,可以在不同监管框架的背景下,努力采用更统一的科学方法来评估DNT数据。五位演讲者和他们的共同作者与神经毒理学,神经病理学,和监管毒理学专业知识讨论了变异性问题,数据报告和分析,以及监管机构对DNT数据的预期。此外,使用指南DNT数据作为案例研究,提出了数据协调评估的原则。
    The potential for developmental neurotoxicity (DNT) of environmental chemicals may be evaluated using specific test guidelines from the US Environmental Protection Agency or the Organisation for Economic Cooperation and Development (OECD). These guidelines generate neurobehavioral, neuropathological, and morphometric data that are evaluated by regulatory agencies globally. Data from these DNT guideline studies, or the more recent OECD extended one-generation reproductive toxicity guideline, play a pivotal role in children\'s health risk assessment in different world areas. Data from the same study may be interpreted differently by regulatory authorities in different countries resulting in inconsistent evaluations that may lead to inconsistencies in risk assessment decisions internationally, resulting in regional differences in public health protection or in commercial trade barriers. These issues of data interpretation and reporting are also relevant to juvenile and pre-postnatal studies conducted more routinely for pharmaceuticals and veterinary medicines. There is a need for development of recommendations geared toward the operational needs of the regulatory scientific reviewers who apply these studies in risk assessments, as well as the scientists who generate DNT data sets. The workshops summarized here draw upon the experience of the authors representing government, industry, contract research organizations, and academia to discuss the scientific issues that have emerged from diverse regulatory evaluations. Although various regulatory bodies have different risk management decisions and labeling requirements that are difficult to harmonize, the workshops provided an opportunity to work toward more harmonized scientific approaches for evaluating DNT data within the context of different regulatory frameworks. Five speakers and their coauthors with neurotoxicology, neuropathology, and regulatory toxicology expertise discussed issues of variability, data reporting and analysis, and expectations in DNT data that are encountered by regulatory authorities. In addition, principles for harmonized evaluation of data were suggested using guideline DNT data as case studies.
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