Molecular classification

分子分类
  • 文章类型: Case Reports
    癌肉瘤是高级子宫内膜癌,其包含间充质和上皮分化成分。这些癌症中的绝大多数属于p53异常分子亚组,通常预后不良。POLE突变癌肉瘤很少见,仅占该组织学亚型的5%。最近的文献甚至表明,这个数字仍然是高估和未分化或去分化子宫内膜癌分类错误的结果。在这里,我们介绍了一例诊断为子宫癌肉瘤的56岁患者。子宫切除术,进行了双侧输卵管卵巢切除术并进行了盆腔淋巴结分期,对肿瘤进行了完整的分子检查,发现p53表达异常以及病理性POLE突变。NGS分别对这种高级别癌症的上皮和间质成分进行,这两个成分共有两个相同的POLE突变,一个已知的病理性突变,和未知意义的变体(VUS)。这一发现暗示了该肿瘤的两种组织学成分的克隆起源,并支持转化理论作为癌肉瘤出现的机制。癌症正确分期为FIGO2023期IAmPOLEmut,根据ESGO-ESTRO-ESP指南,不再考虑辅助化疗,我们的患者在详细讨论后进入随访。
    Carcinosarcomas are high-grade endometrial cancers which enclose mesenchymal and epithelial differentiated components. The vast majority of these cancers belong to the p53 abnormal molecular subgroup and usually come with an unfavorable prognosis. POLE mutant carcinosarcomas are a rarity and only make up about 5% of this histologic subtype. Recent literature even suggests that this number is still an overestimation and the result of misclassification of undifferentiated or dedifferentiated endometrial cancers. Here we present a case of a 56-years old patient diagnosed with carcinosarcoma of the uterus. Hysterectomy, bilateral salpingo-oophorectomy with pelvic lymph node staging was performed and complete molecular workup of the tumor revealed an abnormal p53 expression as well as a pathologic POLE mutation. NGS was performed separately on the epithelial and mesenchymal component of this high-grade cancer and both components shared two identical POLE mutations, a known pathologic mutation, and a variant of unknown significance (VUS). This finding hints to a clonal origin of both histologic components of this tumor and supports conversion theory as mechanism of carcinosarcoma emergence. The cancer was correctly staged as FIGO 2023 Stage IAmPOLEmut and according to ESGO-ESTRO-ESP guidelines adjuvant chemotherapy no longer considered and our patient entered follow-up after a detailed discussion.
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  • 文章类型: Systematic Review
    目的:子宫内膜癌(EC)的分子分类已成为术前定制手术治疗的有希望的信息。我们旨在根据分子谱评估EC患者的淋巴结转移(LNM)率。
    方法:根据PRISMA指南,通过在两个主要的电子数据库(PubMed和Scopus)中搜索进行系统评价和荟萃分析,包括根据ESGO-ESMO-ESP指南中分类的EC分子分类报告淋巴结转移的原始文章。
    结果:15项研究纳入3056例患者。仅考虑接受淋巴结评估的患者的合并患病率LNM为POLE突变的4%(95CI:0-12%),没有特定分子谱的22%(95%CI:9-39%),23%为错配修复缺陷(95CI:10-40%),31%为p53异常(95CI:24-39%)。
    结论:LNM的存在似乎受分子分类的影响。P53异常组淋巴结受累率最高,和POLE突变最低。
    OBJECTIVE: Molecular classification of endometrial cancer (EC) has become a promising information to tailor preoperatively the surgical treatment. We aimed to evaluate the rate of lymph node metastases (LNM) in patients with EC according to molecular profile.
    METHODS: A systematic review and meta-analysis were performed according to PRISMA guidelines by searching in two major electronic databases (PubMed and Scopus), including original articles reporting lymph node metastases according to the molecular classification of EC as categorized in the ESGO-ESMO-ESP guidelines.
    RESULTS: Fifteen studies enrolling 3056 patients were included. Pooled prevalence LNM when considering only patients undergoing lymph node assessment was 4% for POLE-mutated (95%CI: 0-12%), 22% for no specific molecular profile (95% CI: 9-39%), 23% for Mismatch repair-deficiency (95%CI: 10-40%) and 31% for p53-abnormal (95%CI: 24-39%).
    CONCLUSIONS: The presence of LNM seems to be influenced by molecular classification. P53-abnormal group presents the highest rate of nodal involvement, and POLE-mutated the lowest.
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  • 文章类型: Journal Article
    子宫内膜癌是女性常见的妇科肿瘤,其发病率近年来呈上升趋势。由于其主要症状,大多数女性会出现子宫出血。通常在早期诊断,手术在治疗计划中具有重要作用。这些患者的预后和生活质量可能非常有利,如果外科医生提供适当的治疗。传统上,为这些患者提供了更多侵入性的方法和程序,但是最近的数据表明,在治疗算法中可以采用更保守和微创的选择。微创手术,比如腹腔镜和机器人手术,应被视为可接受的替代方案,与开腹手术相比,合并症较少,肿瘤和生存结局相似。此外,前哨淋巴结活检已经出现在子宫内膜癌的手术分期中,以取代综合淋巴结清扫术。它与较少的术中和术后并发症有关,而初步数据显示生存率没有差异。然而,前哨淋巴结活检应在严格的算法内提供,以避免残留的转移性疾病。这篇综述的目的是分析所有可用的数据,以将微创手术应用于早期子宫内膜癌,尤其是前哨淋巴结活检的作用。
    Endometrial cancer is a common female gynecological neoplasia and its incidence rate has increased in the past years. Due to its predominant symptoms, most women will present uterine bleeding. It is usually diagnosed at an early stage and surgery has an important role in the treatment plan. The prognosis and quality of life of these patients can be quite favorable, if proper treatment is offered by surgeons. Traditionally, more invasive approaches and procedures were offered to these patients, but recent data suggest that more conservative and minimal invasive choices can be adopted in the treatment algorithm. Minimal invasive surgery, such as laparoscopy and robotic surgery, should be considered as an acceptable alternative, compared to laparotomy with less comorbidities and similar oncological and survival outcomes. Furthermore, sentinel lymph node biopsy has emerged in the surgical staging of endometrial cancer, in order to replace comprehensive lymphadenectomy. It is associated with less intra- and postoperative complications, while preliminary data show no difference in survival rates. However, sentinel lymph node biopsy should be offered within a strict algorithm, to avoid residual metastatic disease. The aim of this review is to analyze all the available data for the application of minimal invasive surgery in early endometrial cancer and especially the role of sentinel lymph node biopsy.
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  • 文章类型: Meta-Analysis
    背景:胃上皮肿瘤表现出形态学异质性,不同的生物行为,和不同的病理途径。癌症基因组图谱(TCGA)提出了基于遗传和分子发现的胃腺癌的分子分类,这显示了诊断的特殊特征,预后,间接地,治疗替代方案。在这个分类中,爱泼斯坦-巴尔病毒阳性(EBV)和高微卫星不稳定性(MSI-H)亚型是表现出较低侵袭性生物学行为和高度残缺表型的亚型。这项研究进行了系统评价,重点是基于TCGA提出的分子分类的流行病学和预后因素。
    方法:广泛,全面,使用ROBINS-I和GRADepro方案以及适当的关键词组合,进行了方法学严谨的可重复搜索,以进行研究选择。
    结果:总共选择了25项研究:6项具有与TCGA相似的完整分类,19项具有MSI-H和EBV+之间的区别。荟萃分析计算的应用加强了男性中Epstein-Barr腺癌阳性和女性中微卫星高度不稳定的患病率,由于使用了严格的方法,在分析的研究中具有高度的证据确定性和低偏倚风险。
    结论:TCGA提出的分子分类显示传播有限,MSI-H和EBV+亚型是研究最多的,可能是由于与免疫疗法相关的好处。然而,子分类不能限于少于四分之一的案件,这方面的改进对于建立关于全球健康这一重要主题的知识是紧迫的。
    BACKGROUND: Gastric epithelial tumors exhibit morphological heterogeneity, diverse biological behaviors, and different oncopathological pathways. The Cancer Genome Atlas (TCGA) proposed a molecular classification of gastric adenocarcinomas based on genetic and molecular findings, which shows particular characteristics of diagnosis, prognosis, and indirectly, therapeutic alternatives. Within this classification, Epstein-Barr virus-positive (EBV+) and high microsatellite instability (MSI-H) subtypes stand out as subtypes that present a less aggressive biological behavior and a highly mutilated phenotype. This study conducted a systematic review with an emphasis on epidemiological and prognostic factors based on the molecular classification proposed by TCGA.
    METHODS: A broad, comprehensive, and reproducible search with methodological rigor was conducted for study selection using the ROBINS-I and GRADEpro protocols and appropriate combinations of keywords.
    RESULTS: A total of 25 studies were selected: six with a complete classification similar to TCGA and 19 with a distinction between MSI-H and EBV+. The application of meta-analysis calculations reinforces the prevalence of positive Epstein-Barr adenocarcinomas in males and high microsatellite instability in females, with a high level of certainty of evidence and low risk of bias in the analyzed studies due to the rigorous methods used.
    CONCLUSIONS: The molecular classification proposed by TCGA shows limited dissemination, with MSI-H and EBV+ subtypes being the most researched, probably due to the benefit of the association with immunotherapies. However, the subclassification cannot be restricted to less than a quarter of the cases, and improvements in this aspect are urgent for the construction of knowledge on this important topic of global health.
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  • 文章类型: Journal Article
    胃癌(GC)仍然是一种预后不良的疾病,尽管越来越多的更有效的靶向治疗。这可能部分是由于难以选择用于适当治疗的患者。GC的常规分类不适合充分利用个性化治疗的最新进展。在过去的十年中,已经提出了许多分子分类来解决这个问题;然而,到目前为止,在诊断程序中几乎没有实施。这些分类之间缺乏协调,所需的一些测试的复杂性和不可用性,以及对时间和资源的需求,所有这些都导致了诊断程序中的不良摄取。在本研究中,对这些分类进行了审查,并制定了包含其要点的包容性工作分类,侧重于预后和治疗选择,可以使用四个幻灯片上的测试(原位杂交爱泼斯坦-巴尔编码区和免疫组织化学错配修复,提出了E-钙粘蛋白和p53)。这些测试可以在石蜡包埋的组织上进行,并且可以在大多数组织病理学实验室中使用。所提出的分类还包括与治疗选择相关的特定生物标志物的反射测试。
    Gastric cancer (GC) remains a disease with poor prognosis despite increasing availability of more effective targeted treatment. This may be in part due to the difficulty in selecting patients for appropriate treatment. Conventional taxonomic classifications of GC are ill-suited to make full use of recent advances in personalised therapy. In the past decade a number of molecular classifications have been proposed to address this; however, to date, there has been little implementation in the diagnostic routine. The lack of harmonisation between these classifications, the complexity and unavailability of some of the tests required plus the demands on time and resources, all contribute to poor uptake in the diagnostic routine. In the present study, these classifications were reviewed and an inclusive working classification that includes their main points, focuses on prognosis and treatment options and can be delivered using four on-slide tests (in situ hybridization for Epstein-Barr encoding region and immunohistochemistry for mismatch repair, E-cadherin and p53) is proposed. These tests can be performed on paraffin-embedded tissue and could be available in the majority of histopathology laboratories. The proposed classification also includes reflex testing for specific biomarkers relevant to treatment selection.
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  • 文章类型: Systematic Review
    背景与目的:本研究旨在通过系统评价和荟萃分析,阐明EB病毒(EBV)感染在胃癌(GCs)中的预后意义。材料和方法:总计,57项符合条件的研究和22,943例患者被纳入该荟萃分析。我们比较了EBV感染和未感染GC患者的预后。根据研究地点进行亚组分析,分子分类,和劳伦的分类。这项研究是根据PRISMA2020进行检查的。采用综合Meta分析软件包进行Meta分析。结果:在GC患者中,有10.4%(95%置信区间(CI)0.082-0.131)发现EBV感染。与未感染EBV的GC患者相比,感染EBV的GC患者具有更好的总体生存率(风险比(HR)0.890,95%CI0.816-0.970)。在基于分子分类的子群分析中,EBV+和微卫星不稳定性和微卫星稳定(MSS)/EBV-亚组之间没有发现显着差异(分别为HR1.099,95%CI0.885-1.364和HR0.954,95%CI0.872-1.044)。在劳伦分类的扩散类型中,与未感染EBV的GCs相比,感染EBV的GCs具有更好的预后(HR0.400,95%CI0.300-0.534)。EBV感染的预后影响在亚洲和美国亚组中发现,但在欧洲亚组中没有发现(HR0.880,95%CI0.782-0.991,HR0.840,95%CI0.750-0.941和HR0.915,95%CI0.814-1.028)。结论:EBV感染是GCs生存的有利因素。然而,EBV感染在新的分子分类中的预后意义尚不清楚.
    Background and objectives: This study aims to elucidate the prognostic implications of Epstein-Barr virus (EBV) infection in gastric carcinomas (GCs) through a systematic review and meta-analysis. Materials and Methods: In total, 57 eligible studies and 22,943 patients were included in this meta-analysis. We compared the prognoses of EBV-infected and non-infected GC patients. The subgroup analysis was performed based on the study location, molecular classification, and Lauren\'s classification. This study was checked according to the PRISMA 2020. The meta-analysis was performed using the Comprehensive Meta-Analysis software package. Results: EBV infection was found in 10.4% (95% confidence interval (CI) 0.082-0.131) of GC patients. The EBV-infected GC patients had a better overall survival compared with the EBV-non-infected GC patients (hazard ratio (HR) 0.890, 95% CI 0.816-0.970). In the subgroup analysis based on molecular classification, no significant differences were found between EBV+ and microsatellite instability and microsatellite stable (MSS)/EBV- subgroups (HR 1.099, 95% CI 0.885-1.364 and HR 0.954, 95% CI 0.872-1.044, respectively). In the diffuse type of Lauren\'s classification, EBV-infected GCs have a better prognosis compared with the EBV-non-infected GCs (HR 0.400, 95% CI 0.300-0.534). The prognostic impact of EBV infection was found in the Asian and American subgroups but not in the European subgroup (HR 0.880, 95% CI 0.782-0.991, HR 0.840, 95% CI 0.750-0.941, and HR 0.915, 95% CI 0.814-1.028). Conclusions: EBV infection is a favorable survival factor for GCs. However, the prognostic implications of EBV infection in the new molecular classification are not clear.
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  • 文章类型: Journal Article
    乳腺癌是最常见的恶性肿瘤,也是女性癌症相关死亡的第二大常见原因。三阴性乳腺癌不表达雌激素受体,孕激素受体,或人类表皮生长因子受体2,具有较高的复发率,更大的转移潜力,总体生存率低于其他乳腺癌。三阴性乳腺癌的治疗具有挑战性;分子靶向治疗在很大程度上是无效的,并且没有标准的治疗方法。在这次审查中,我们根据三阴性乳腺癌的分子特征评估了目前对其进行分类的尝试.我们还描述了具有不同优势的有前途的治疗方法,并讨论了遗传生物标志物和其他预测工具。三阴性乳腺癌的准确分子分类对于患者风险分类至关重要。治疗决定,和监视。这篇综述为更有效地治疗三阴性乳腺癌提供了新思路,并确定了新的药物开发靶点。
    Breast cancer is the most common malignancy and the second most common cause of cancer-related mortality in women. Triple-negative breast cancers do not express estrogen receptors, progesterone receptors, or human epidermal growth factor receptor 2 and have a higher recurrence rate, greater metastatic potential, and lower overall survival rate than those of other breast cancers. Treatment of triple-negative breast cancer is challenging; molecular-targeted therapies are largely ineffective and there is no standard treatment. In this review, we evaluate current attempts to classify triple-negative breast cancers based on their molecular features. We also describe promising treatment methods with different advantages and discuss genetic biomarkers and other prediction tools. Accurate molecular classification of triple-negative breast cancers is critical for patient risk categorization, treatment decisions, and surveillance. This review offers new ideas for more effective treatment of triple-negative breast cancer and identifies novel targets for drug development.
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  • 文章类型: Journal Article
    背景:分子表征在影响治疗策略和患者预后的神经胶质瘤分类中起着至关重要的作用。已提出动态敏感性对比(DSC)和动态对比增强(DCE)灌注成像作为帮助以非侵入性方式表征神经胶质瘤的方法。本研究旨在回顾和荟萃分析DSC和/或DCE灌注MRI预测IDH基因型和1p/19q完整性状态的准确性的证据。
    方法:在Medline上进行系统的文献检索后,EMBASE,WebofScience和Cochrane图书馆,进行了定性荟萃综合和定量荟萃分析.对不同灌注指标的汇总AUC数据进行Meta分析。
    结果:在680篇论文中,包括12个用于定性元合成,共1384名患者。据观察,CBV,ktrans,Ve和Vp值为,总的来说,与IDH突变的神经胶质瘤相比,IDH野生型明显更高。包括五篇论文(共316例患者)的荟萃分析显示,CBV的AUC,ktrans,Ve和Vp为0.85(95%-CI0.75-0.93),0.81(95%-CI0.74-0.89),0.84(95%-CI0.71-0.97)和0.76(95%-CI0.61-0.90),分别。从这些研究中没有关于1p/19q完整性预测的结论性数据。
    结论:未来的研究应旨在基于灌注MRI数据预测1p/19q完整性。此外,与其他临床相关结果的相关性应进一步研究,包括患者分层治疗和总生存期。
    BACKGROUND: Molecular characterization plays a crucial role in glioma classification which impacts treatment strategy and patient outcome. Dynamic susceptibility contrast (DSC) and dynamic contrast enhanced (DCE) perfusion imaging have been suggested as methods to help characterize glioma in a non-invasive fashion. This study set out to review and meta-analyze the evidence on the accuracy of DSC and/or DCE perfusion MRI in predicting IDH genotype and 1p/19q integrity status.
    METHODS: After systematic literature search on Medline, EMBASE, Web of Science and the Cochrane Library, a qualitative meta-synthesis and quantitative meta-analysis were conducted. Meta-analysis was carried out on aggregated AUC data for different perfusion metrics.
    RESULTS: Of 680 papers, twelve were included for the qualitative meta-synthesis, totaling 1384 patients. It was observed that CBV, ktrans, Ve and Vp values were, in general, significantly higher in IDH wildtype compared to IDH mutated glioma. Meta-analysis comprising of five papers (totaling 316 patients) showed that the AUC of CBV, ktrans, Ve and Vp were 0.85 (95%-CI 0.75-0.93), 0.81 (95%-CI 0.74-0.89), 0.84 (95%-CI 0.71-0.97) and 0.76 (95%-CI 0.61-0.90), respectively. No conclusive data on the prediction of 1p/19q integrity was available from these studies.
    CONCLUSIONS: Future research should aim to predict 1p/19q integrity based on perfusion MRI data. Additionally, correlations with other clinically relevant outcomes should be further investigated, including patient stratification for treatment and overall survival.
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  • 文章类型: Journal Article
    膀胱癌患者的治疗在很大程度上取决于病理分期和分级,目前的形态学分类并不总是显示个体患者的风险。尽管有现代手术技术,术前和术后治疗,这些患者的临床结局几十年来没有改变.今天,有新的膀胱癌生物标志物显示肿瘤生物学和进展的变化,由于影响细胞信号传导的途径的变化,扩散,凋亡,表观遗传变化,血管生成,和调节宿主免疫反应。与这些途径相关的多种生物标志物的评估提供了对肿瘤行为的新理解,同时确定了预测患者管理和结果的重要小组。在这次审查中,介绍了膀胱癌新分子分类的最重要分子和基础。
    The management of bladder cancer patients largely depends on pathologic staging and grading, and current morphological classification does not always show the individual patient\'s risk. Despite modern surgical techniques, pre- and postoperative therapies, clinical outcomes of these patients have not changed over decades. Today, there are new biomarkers for bladder cancer showing changes in tumor biology and progression, as a result of changes in the pathways affecting cell signaling, proliferation, apoptosis, epigenetic changes, angiogenesis, and modulation of host immune response. Assessment of multiple biomarkers associated with those pathways offers new understanding of tumor behavior while identifying important panels of predicting patient management and outcomes. In this review, the most important molecules and basics of the novel molecular classification of bladder cancer are presented.
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  • 文章类型: Journal Article
    术语“卵巢癌”包括至少五种不同的恶性肿瘤:高级别浆液性癌,低级别浆液性癌,子宫内膜样癌,黏液性癌,和透明细胞癌.这五种组织学表现出独特的组织学,分子,和临床特征。新型靶向疗法和量身定制的肿瘤学方法的兴起要求在卵巢癌的背景下采用综合的多学科方法。需要在卵巢癌的全球诊断和治疗环境中实施基于分子的分类,需要寻找易于使用且具有成本效益的分子替代生物标志物。尤其依赖于免疫组织化学分析。本综述着重于免疫组织化学在卵巢癌的日常诊断方法中作为分子分析替代的作用。
    The term \"ovarian carcinoma\" encompasses at least five different malignant neoplasms: high-grade serous carcinoma, low-grade serous carcinoma, endometrioid carcinoma, mucinous carcinoma, and clear cell carcinoma. These five histotypes demonstrated distinctive histological, molecular, and clinical features. The rise of novel target therapies and of a tailored oncological approach has demanded an integrated multidisciplinary approach in the setting of ovarian carcinoma. The need to implement a molecular-based classification in the worldwide diagnostic and therapeutic setting of ovarian cancer demanded a search for easy-to-use and cost-effective molecular-surrogate biomarkers, relying particularly on immunohistochemical analysis. The present review focuses on the role of immunohistochemistry as a surrogate of molecular analysis in the everyday diagnostic approach to ovarian carcinomas.
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