Molecular classification

分子分类
  • 文章类型: Case Reports
    癌肉瘤是高级子宫内膜癌,其包含间充质和上皮分化成分。这些癌症中的绝大多数属于p53异常分子亚组,通常预后不良。POLE突变癌肉瘤很少见,仅占该组织学亚型的5%。最近的文献甚至表明,这个数字仍然是高估和未分化或去分化子宫内膜癌分类错误的结果。在这里,我们介绍了一例诊断为子宫癌肉瘤的56岁患者。子宫切除术,进行了双侧输卵管卵巢切除术并进行了盆腔淋巴结分期,对肿瘤进行了完整的分子检查,发现p53表达异常以及病理性POLE突变。NGS分别对这种高级别癌症的上皮和间质成分进行,这两个成分共有两个相同的POLE突变,一个已知的病理性突变,和未知意义的变体(VUS)。这一发现暗示了该肿瘤的两种组织学成分的克隆起源,并支持转化理论作为癌肉瘤出现的机制。癌症正确分期为FIGO2023期IAmPOLEmut,根据ESGO-ESTRO-ESP指南,不再考虑辅助化疗,我们的患者在详细讨论后进入随访。
    Carcinosarcomas are high-grade endometrial cancers which enclose mesenchymal and epithelial differentiated components. The vast majority of these cancers belong to the p53 abnormal molecular subgroup and usually come with an unfavorable prognosis. POLE mutant carcinosarcomas are a rarity and only make up about 5% of this histologic subtype. Recent literature even suggests that this number is still an overestimation and the result of misclassification of undifferentiated or dedifferentiated endometrial cancers. Here we present a case of a 56-years old patient diagnosed with carcinosarcoma of the uterus. Hysterectomy, bilateral salpingo-oophorectomy with pelvic lymph node staging was performed and complete molecular workup of the tumor revealed an abnormal p53 expression as well as a pathologic POLE mutation. NGS was performed separately on the epithelial and mesenchymal component of this high-grade cancer and both components shared two identical POLE mutations, a known pathologic mutation, and a variant of unknown significance (VUS). This finding hints to a clonal origin of both histologic components of this tumor and supports conversion theory as mechanism of carcinosarcoma emergence. The cancer was correctly staged as FIGO 2023 Stage IAmPOLEmut and according to ESGO-ESTRO-ESP guidelines adjuvant chemotherapy no longer considered and our patient entered follow-up after a detailed discussion.
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  • 文章类型: Case Reports
    中枢神经细胞瘤(CN)通常由其脑室内位置定义,神经元/神经细胞分化,和少突胶质细胞瘤的组织学相似。脑室外神经细胞瘤(EVN)具有与CN相似的组织学特征,同时它分布任何部位而不与心室系统接触。CN和EVN具有不同的甲基化景观,EVN有一个特征融合基因,FGFR1-TACC1。这些特性区分CN和EVN。一名30岁的女性在我们机构接受了开颅手术和左心室肿瘤切除术。组织病理学证明了CN的经典发现。随后用60Gy辅助照射。术后25年无复发记录。RNA测序显示FGFR1-TACC1融合和甲基化谱与CN不一致,但与EVN兼容。我们在侧脑室经历了一次解剖学和组织学证实的CN病例。然而,FGFR1-TACC1融合基因和甲基化分析提示EVN的分子诊断。代表性病例是“脑室内”神经细胞瘤,表现出“脑室外”神经细胞瘤的分子特征。在我们的案例中,临床病理和分子定义发生了冲突,并对CN和EVN的当前定义提出了疑问。
    Central neurocytoma (CN) is classically defined by its intraventricular location, neuronal/neurocytic differentiation, and histological resemblance to oligodendroglioma. Extraventricular neurocytoma (EVN) shares similar histological features with CN, while it distributes any site without contact with the ventricular system. CN and EVN have distinct methylation landscapes, and EVN has a signature fusion gene, FGFR1-TACC1. These characteristics distinguish between CN and EVN. A 30-year-old female underwent craniotomy and resection of a left intraventricular tumor at our institution. The histopathology demonstrated the classical findings of CN. Adjuvant irradiation with 60 Gy followed. No recurrence has been recorded for 25 years postoperatively. RNA sequencing revealed FGFR1-TACC1 fusion and methylation profile was discrepant with CN but compatible with EVN. We experienced a case of anatomically and histologically proven CN in the lateral ventricle. However, the FGFR1-TACC1 fusion gene and methylation profiling suggested the molecular diagnosis of EVN. The representative case was an \"intraventricular\" neurocytoma displaying molecular features of an \"extraventricular\" neurocytoma. Clinicopathological and molecular definitions have collided in our case and raised questions about the current definition of CN and EVN.
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  • 文章类型: Journal Article
    乳腺癌向胃的转移性扩散是罕见的事件,通常代表诊断挑战。在本研究中,23例乳腺癌胃转移的回顾性发现可追溯到2007年。原始组织型,本地化,粗糙的外观,微观结构进行了分析。细胞角蛋白7和20,性激素,评估HER2和Ki67表达。根据结果,该系列的特征是小叶原始组织型的富集(43.7%)。在大多数情况下,胃转移被描述为壁结节,息肉样肿块或溃疡病变,主要涉及前角区域。在相对较高的比率(10.5%)的病例中,内镜检查结果为宏观病变阴性.超过一半的病例(52.2%)在显微镜下类似于原始粘性差的胃癌。因为粗略和组织学的发现可能是欺骗性的,免疫组织化学可能对乳腺癌胃转移的诊断至关重要。根据我们的分析和文献综述的结果,由细胞角蛋白7和20、雌激素和孕激素受体组成的免疫组织化学小组将大大提高诊断准确性。临床医生之间的互动,内窥镜医师和病理学家对于为患者提供最佳治疗选择也至关重要。
    The metastatic spread of breast carcinoma to the stomach is a rare event and often represents a diagnostic challenge. In the present study, 23 cases of gastric metastases from breast cancer were retrospectively identified dating back until 2007. Primitive histotype, localization, gross appearance, microscopic architecture were analyzed. Cytokeratins 7 and 20, sex hormones, HER2 and Ki67 expression was evaluated. According to the results, the series was characterized by an enrichment of lobular primitive histotype (43.7%). In most cases gastric metastases were described as parietal nodules, polypoid masses or ulcerated lesions, mainly involving the antro-angular region. In a relatively high rate (10.5%) of cases, endoscopic examinations resulted negative for macroscopic lesions. More than half of the cases (52.2%) microscopically resembled primitive poorly cohesive gastric cancer. Because gross and histological findings can be deceiving, immunohistochemistry may be essential for the diagnosis of gastric metastases from breast cancer. Accordingly with the results of our analysis and literature review, an immunohistochemical panel composed of cytokeratins 7 and 20, Estrogen and Progesteron Receptors would drastically improve diagnostic accuracy. Interaction among the clinician, endoscopist and the pathologist is also essential to provide the patient the best therapeutic option.
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  • 文章类型: Case Reports
    我们报告了一例26岁的中国男子,他在过去两个月中经历了三次大发作。磁共振成像显示左额叶有相对明确的病灶。进行了完全切除肿瘤的开颅手术。根据世界卫生组织的分类,组织病理学研究证实了2级室管膜瘤。遗传分析显示肿瘤有FAM118B与YAP1融合,未检测到O6-甲基鸟嘌呤-DNA甲基转移酶基因启动子的其他遗传改变或甲基化。这是第二例YAP1:FAM118B融合的室管膜瘤。
    We report a case of a 26-year-old Chinese man who had experienced three grand mal seizures in the past two months. Magnetic resonance imaging revealed a relatively well-circumscribed lesion in the left frontal lobe. A craniotomy with total excision of the tumor was performed. Histopathological investigations confirmed a grade 2 ependymoma according to the World Health Organization classification. Genetic analysis revealed a tumor harboring FAM118B fusion to YAP1, and no other genetic alterations or methylation of the O6 -methylguanine-DNA methyltransferase gene promoter were detected. This is the second case report of ependymoma with YAP1:FAM118B fusion.
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  • 文章类型: Case Reports
    BACKGROUND: The concept of precision medicine in cancer includes individual molecular studies to predict clinical outcomes. In the present N = 1 case we retrospectively have analysed lymphoma tissue by exome sequencing and global gene expression in a patient with unexpected long-term remission following relaps. The goals were to phenotype the diagnostic and relapsed lymphoma tissue and evaluate its pattern. Furthermore, to identify mutations available for targeted therapy and expression of genes to predict specific drug effects by resistance gene signatures (REGS) for R-CHOP as described at http://www.hemaclass.org. We expected that such a study could generate therapeutic information and a frame for future individual evaluation of molecular resistance detected at clinical relapse.
    METHODS: The patient was diagnosed with a transformed high-grade non-Hodgkin lymphoma stage III and treated with conventional R-CHOP [rituximab (R), cyclophosphamide (C), doxorubicin (H), vincristine (O) and prednisone (P)]. Unfortunately, she suffered from severe toxicity but recovered during the following 6 months\' remission until biopsy-verified relapse. The patient refused second-line combination chemotherapy, but accepted 3 months\' palliation with R and chlorambucil. Unexpectedly, she obtained continuous complete remission and is at present >9 years after primary diagnosis. Molecular studies and data evaluation by principal component analysis, mutation screening and copy number variations of the primary and relapsed tumor, identified a pattern of branched lymphoma evolution, most likely diverging from an in situ follicular lymphoma. Accordingly, the primary diagnosed transformed lymphoma was classified as a diffuse large B cell lymphoma (DLBCL) of the GCB/centrocytic subtype by \"cell of origin BAGS\" assignment and R sensitive and C, H, O and P resistant by \"drug specific REGS\" assignment. The relapsed DLBCL was classified as NC/memory subtype and R, C, H sensitive but O and P resistant.
    CONCLUSIONS: Thorough analysis of the tumor DNA and RNA documented a branched evolution of the two clinical diagnosed tFL, most likely transformed from an unknown in situ lymphoma. Classification of the malignant tissue for drug-specific resistance did not explain the unexpected long-term remission and potential cure. However, it is tempting to consider the anti-CD20 immunotherapy as the curative intervention in the two independent tumors of this case.
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