Molecular classification

分子分类
  • 文章类型: Journal Article
    目的:考虑到子宫内膜癌(EC)发病率的上升,已经做出了更好的风险分层的努力。2023FIGO分期现在将组织学亚型和分子分类纳入EC分期的确定。我们试图阐明新的分期系统与2009分期系统相比是否显示出预后差异。
    方法:对2013年9月至2023年5月在我们机构接受EC治疗的女性进行了回顾性图表审查,并结合了公开可用的TCGANature2013数据集。获得了详细的临床信息。根据2023年指南对患者进行重新分组。使用Kaplan-Meier方法获得生存估计值,采用对数秩检验比较无进展生存期(PFS)的生存曲线.
    结果:919例患者纳入我们的分析。数据集在组织学分级方面具有可比性,舞台,和诊断时的年龄。机构数据集中的175名(31.5%)患者和TCGA数据集中的115名(31.6%)患者经历了阶段性变化。大多数患者的分期改变(275/290;94.8%)。无分期变化的IA期患者的3年PFS估计为92.3%(95%CI:87.2,95.4)与72.0%(95%CI:68.4,84.9),p=0.002。其他阶段亚群的生存差异无统计学意义。
    结论:在最初分期为IA的EC患者中,存在适度的生存差异。在重新进入II期或III期亚群的患者中没有观察到显着的生存差异。评估子宫内膜癌患者的预后和辅助治疗需要改进的风险分层。
    OBJECTIVE: Efforts have been made to better risk stratify patients given the rise in incidence of endometrial cancer (EC). The 2023 FIGO staging now incorporates histologic subtype and molecular classification into determination of EC stage. We sought to elucidate if the new staging system demonstrated prognostic differences compared to the 2009 staging system.
    METHODS: A retrospective chart review was performed on women treated for EC at our institution from September 2013 to May 2023 and combined with the publicly available TCGA Nature 2013 dataset. Detailed clinical information was captured. Patients were restaged according to the 2023 guidelines. Survival estimates were obtained using Kaplan-Meier method, and the log-rank test was used to compare survival curves for progression-free survival (PFS).
    RESULTS: 919 patients were included in our analysis. The datasets were comparable regarding histologic grade, stage, and age at diagnosis. 175 (31.5%) of patients in the institution dataset and 115 (31.6%) patients in the TCGA dataset experienced a stage change. Most patients whose stage changed were upstaged (275/290; 94.8%). 3-year PFS estimates for stage IA patients with no stage change versus those upstaged were 92.3% (95% CI: 87.2, 95.4) v. 72.0% (95% CI: 68.4, 84.9), p = 0.002. No significant differences in survival difference were seen in other stage subsets.
    CONCLUSIONS: Modest survival differences exist in patients with EC originally staged as IA who underwent upstaging. No significant survival difference is observed in patients who are restaged to stage II or III subsets. Improved risk stratification is needed in assessing prognosis and adjuvant therapy for patients with endometrial cancer.
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  • 文章类型: Journal Article
    目的:癌症基因组图谱研究显示,2013年子宫内膜癌的高拷贝数(p53异常)基因突变与不良预后之间存在关联。这项回顾性研究调查了p53异常表达和I期患者的预后。低级别子宫内膜子宫内膜样癌(EEC)。
    方法:我们招募了I期女性,在2019年1月至2022年12月期间在麦凯纪念医院接受全面分期和辅助治疗的1级或2级EEC,台北,台湾。病理学家解释癌组织的免疫组织化学染色以检测p53突变。我们比较了复发,生存,无进展生存期,p53异常组和p53正常组之间的总生存率。
    结果:在115名患者中,26例病理证实p53表达异常。在这26名患者中,5人(19.2%)出现复发,两个人因疾病进展而死亡。相比之下,正常p53组没有患者出现疾病复发或因疾病进展而死亡.在复发性疾病状态方面发现了显著的组间差异(19.4%vs.0%,p<0.001),死亡率(7.7%vs.0%,p<0.001),无进展生存期(p<0.001)。总生存率(p=0.055)也显示出强烈的恶化趋势。
    结论:对于I期患者,低等级EEC,p53异常表达可作为预后不良的指标。因此,我们建议考虑对这些患者进行积极的辅助治疗.
    OBJECTIVE: The Cancer Genome Atlas study revealed an association between copy-number high (p53 abnormal) genetic mutation and poor prognosis in endometrial cancer in 2013. This retrospective study investigated outcomes in patients with abnormal p53 expression and stage I, low-grade endometrial endometrioid carcinoma (EEC).
    METHODS: We enrolled women with stage I, grade 1 or 2 EEC who received comprehensive staging and adjuvant therapy between January 2019 and December 2022 at MacKay Memorial Hospital, Taipei, Taiwan. Pathologists interpreted immunohistochemistry stains of cancerous tissues to detect p53 mutation. We compared recurrence, survival, progression-free survival, and overall survival between p53 abnormal and p53 normal groups.
    RESULTS: Of the 115 patients included, 26 had pathologically confirmed abnormal p53 expression. Of these 26 patients, five (19.2%) experienced recurrence, and two died due to disease progression. By contrast, no patients in the normal p53 group experienced disease recurrence or died due to disease progression. Significant intergroup differences were discovered in recurrent disease status (19.4% vs. 0%, p<0.001), mortality (7.7% vs. 0%, p<0.001), and progression-free survival (p<0.001). The overall survival (p=0.055) also showed powerful worse trend.
    CONCLUSIONS: For patients with stage I, low-grade EEC, abnormal p53 expression may be used as an indicator of poor prognosis. Therefore, we suggest considering aggressive adjuvant therapies for these patients.
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  • 文章类型: Journal Article
    没有前瞻性研究验证分子分类来指导子宫内膜癌(EC)的辅助治疗,甚至没有形态学低危EC患者的回顾性数据。我们做了一个回顾,多中心,纳入370例低危子宫内膜样EC患者的观察性研究,以评估p53异常表达(p53abn)在该特定亚组中的发生率和预后作用。在370名患者中,p53异常表达18例(4.9%)。370名患者中有13名(3.6%)观察到复发,两个是p53abn。当调整中位随访时间时,p53abn患者与p53野生型患者(p53wt)的复发比值比(OR)为5.23-95%CI0.98-27.95,p=0.053.最常见的复发部位是阴道袖带(46.2%)。在随访的第一年内发生了一次复发,患者表现为p53abn。p53abn和p53wt组的1年和2年DFS率分别为94.4%和100%,分别。一名患者死于该疾病并包含p53wt。两组之间的OS无差异;中位OS为21.9个月(16.4-30.1)。需要更大的多中心研究来调整p53abn低危EC患者的治疗。对所有EC患者进行分子分类可能具有成本效益,尽管我们的样本相对较小,p53abn患者似乎有更大的复发风险,特别是在当地和诊断两年后。
    No prospective study has validated molecular classification to guide adjuvant treatment in endometrial cancer (EC), and not even retrospective data are present for patients with morphological low-risk EC. We conducted a retrospective, multicenter, observational study including 370 patients with low-risk endometrioid EC to evaluate the incidence and prognostic role of p53 abnormal expression (p53abn) in this specific subgroup. Among 370 patients, 18 had abnormal expressions of p53 (4.9%). In 13 out of 370 patients (3.6%), recurrences were observed and two were p53abn. When adjusting for median follow-up time, the odds ratio (OR) for recurrence among those with p53abn versus p53 wild type (p53wt) was 5.23-CI 95% 0.98-27.95, p = 0.053. The most common site of recurrence was the vaginal cuff (46.2%). One recurrence occurred within the first year of follow-up, and the patient exhibited p53abn. Both 1-year and 2-year DFS rates were 94.4% and 100% in the p53abn and p53wt groups, respectively. One patient died from the disease and comprised p53wt. No difference in OS was registered between the two groups; the median OS was 21.9 months (16.4-30.1). Larger multicenter studies are needed to tailor the treatment of low-risk EC patients with p53abn. Performing molecular classification on all EC patients might be cost-effective, and despite the limits of our relatively small sample, p53abn patients seem to be at greater risk of recurrence, especially locally and after two years since diagnosis.
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  • 文章类型: Journal Article
    背景与目的:胃癌(GC)是世界范围内最常见的癌症之一,也是癌症死亡的第四大原因。个性化治疗可改善GC结果。需要分子分类来选择合适的治疗方法。使用载玻片上生物标志物和福尔马林固定和石蜡包埋(FFPE)组织的分类优于综合基因组分析。2016年,Setia及其同事提出了幻灯片分类;然而,这并没有被广泛使用。我们提出了对该分类的修改,该分类具有六个亚组:与爱泼斯坦-巴尔病毒(GCEBV)相关的GC,具有错配修复缺陷的GC(GCdMMR),GC与上皮间质转化(GCEMT),具有染色体不稳定性的GC(GCCIN),基因组稳定的CG(GCGS)和未另外指定的GC(GCNOS)。该分类还提供了用于当前或新兴靶向疗法的生物标志物(Her2、PD-L1和Claudin18.2)。这里,我们评估这一包容性工作分类的实施和可行性。材料和方法:我们从FFPE组织档案的79例切除病例中构建了组织微阵列库。我们使用了幻灯片上标记的受限面板(EBER,MMR,E-cadherin,β-连环蛋白和p53),定义了他们的解释算法,并将每种情况分配给特定的分子亚型。结果:GCEBV(+)占6%,GCdMMR病例为20%,GCEMT病例为14%,GCCIN病例为23%,GCGS病例为29%,GCNOS病例占8%。结论:此工作分类使用在组织病理学中广泛可用且易于解释的标志物。92%的病例获得了诊断亚组。每个亚组的病例比例与其他已发表的系列一致。Widescale的实施似乎是可行的。有必要进行使用内窥镜活检的研究。
    Background and Objectives: Gastric cancer (GC) is one of the most commonly diagnosed cancers and the fourth cause of cancer death worldwide. Personalised treatment improves GC outcomes. A molecular classification is needed to choose the appropriate therapy. A classification that uses on-slide biomarkers and formalin-fixed and paraffin-embedded (FFPE) tissue is preferable to comprehensive genomic analysis. In 2016, Setia and colleagues proposed an on-slide classification; however, this is not in widespread use. We propose a modification of this classification that has six subgroups: GC associated with Epstein-Barr virus (GC EBV+), GC with mismatch-repair deficiency (GC dMMR), GC with epithelial-mesenchymal transformation (GC EMT), GC with chromosomal instability (GC CIN), CG that is genomically stable (GC GS) and GC not otherwise specified (GC NOS). This classification also has a provision for biomarkers for current or emerging targeted therapies (Her2, PD-L1 and Claudin18.2). Here, we assess the implementation and feasibility of this inclusive working classification. Materials and Methods: We constructed a tissue microarray library from a cohort of 79 resection cases from FFPE tissue archives. We used a restricted panel of on-slide markers (EBER, MMR, E-cadherin, beta-catenin and p53), defined their interpretation algorithms and assigned each case to a specific molecular subtype. Results: GC EBV(+) cases were 6%, GC dMMR cases were 20%, GC EMT cases were 14%, GC CIN cases were 23%, GC GS cases were 29%, and GC NOS cases were 8%. Conclusions: This working classification uses markers that are widely available in histopathology and are easy to interpret. A diagnostic subgroup is obtained for 92% of the cases. The proportion of cases in each subgroup is in keeping with other published series. Widescale implementation appears feasible. A study using endoscopic biopsies is warranted.
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  • 文章类型: Journal Article
    碘-125近距离放射治疗是葡萄膜黑色素瘤的有效保护眼睛的治疗方法。先前的工作表明,葡萄膜黑素瘤根据基因表达谱分为不同的分子类别-区分低度和高度肿瘤。我们的目标是确定局部复发(LR)和无进展生存期(PFS)的临床和分子预测因子。
    我们从迈阿密大学的电子病历中构建了一个回顾性数据库,该数据库于2012年1月8日至2019年1月5日期间使用COMS风格或眼部物理斑块进行治疗。关于肿瘤特征的数据,预处理视网膜并发症,斑块治疗后,LR,并收集PFS。使用SAS版本9.4进行LR和PFS累积发生率的单变量和多变量Cox模型。
    我们确定了262名患者,中位随访时间为33.5个月。19例患者(7.3%)患有LR,56例患者(21.4%)被归类为PFS。我们发现眼黑素细胞增多(风险比=5.55,p<0.001)对PFS的影响最大。遗传表达谱不能预测LR结果(风险比=0.51,p=0.297)。
    这些发现有助于医生确定短期近距离放射治疗结果的预测因素,在决定近距离放射治疗和眼球摘除时,可以在术前与患者更好地共享决策。应根据术前特征(如眼黑素细胞增多症)将患者分层为高危人群。未来的研究必须使用前瞻性队列研究来验证这些发现。
    UNASSIGNED: Iodine-125 brachytherapy is an effective eye-sparing treatment for uveal melanoma. Previous work has shown that uveal melanomas cluster into distinct molecular classes based on gene expression profiles - discriminating low-grade from high-grade tumors. Our objective was to identify clinical and molecular predictors of local recurrence (LR) and progression-free survival (PFS).
    UNASSIGNED: We constructed a retrospective database of uveal melanoma patients from the University of Miami\'s electronic medical records that were treated between January 8, 2012, and January 5, 2019, with either COMS-style or Eye Physics plaque. Data on tumor characteristics, pretreatment retinal complications, post-plaque treatments, LR, and PFS were collected. Univariate and multivariate Cox models for cumulative incidence of LR and PFS were conducted using SAS version 9.4.
    UNASSIGNED: We identified 262 patients, with a median follow-up time of 33.5 months. Nineteen patients (7.3%) had LR, and 56 patients (21.4%) were classified as PFS. We found that ocular melanocytosis (hazard ratio = 5.55, p < 0.001) had the greatest impact on PFS. Genetic expression profile did not predict LR outcomes (hazard ratio = 0.51, p = 0.297).
    UNASSIGNED: These findings help physicians identify predictors for short-term brachytherapy outcomes, allowing better shared decision making with patients preoperatively when deciding between brachytherapy versus enucleation. Patients stratified to higher risk groups based on preoperative characteristics such as ocular melanocytosis should be monitored more closely. Future studies must validate these findings using a prospective cohort study.
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  • 文章类型: Multicenter Study
    背景:子宫透明细胞癌(CCC)由纯透明细胞组织学组成,但也可以显示其他组织学成分(混合子宫CCCs)。在这项研究中,比较了纯子宫和混合子宫CCC的分子和免疫组织化学背景。其次,我们评估了组织学分类和分子背景是否影响临床结局.
    方法:进行了一项回顾性多中心研究,比较了纯子宫CCCs(n=22)和混合子宫CCCs(n=21)。使用12个基因靶向小组的靶向下一代测序将病例分类为聚合酶-ε(POLE)突变,微卫星不稳定(MSI),TP53野生型或TP53突变。对雌激素受体进行免疫组织化学,孕激素受体,L1细胞粘附分子,MSH6和PMS2。
    结果:确定了纯和混合子宫CCCs的以下分子亚群,分别为:POLE突变0%(0/18)和6%(1/18);MSI突变6%(1/18)和50%(9/18);TP53野生型突变56%(10/18)和22%(4/18);TP53突变39%(7/18)和22%(4/18)(p=0.013)。与纯CC患者相比,混合CC患者的预后有所改善。在纯CC中发现频繁的TP53突变,在混合CC中发现频繁的MSI,与临床结果相关。
    结论:纯子宫CCCs和混合子宫CCCs是两种具有不同临床结局的实体,这可以用不同的分子背景来解释。这些结果强调了形态学和分子评估的相关性,并可能有助于定制治疗。
    Uterine clear cell carcinoma (CCC) consists of either pure clear cell histology but can also display other histological components (mixed uterine CCCs). In this study, the molecular and immunohistochemical background of pure and mixed uterine CCC was compared. Secondly, it was evaluated whether histological classification and molecular background affected clinical outcome.
    A retrospective multicenter study was performed comparing pure uterine CCCs (n = 22) and mixed uterine CCCs (n = 21). Targeted next-generation sequencing using a 12-gene targeted panel classified cases as polymerase-ε (POLE) mutated, microsatellite instable (MSI), TP53 wildtype or TP53 mutated. Immunohistochemistry was performed for estrogen receptor, progesterone receptor, L1 cell adhesion molecule, MSH6, and PMS2.
    The following molecular subgroups were identified for pure and mixed uterine CCCs, respectively: POLE mutated 0% (0/18) and 6% (1/18); MSI in 6% (1/18) and 50% (9/18); TP53 wildtype in 56% (10/18) and 22% (4/18); TP53 mutated in 39% (7/18) and 22% (4/18) (p = 0.013). Patients with mixed CCCs had improved outcome compared to patients with pure CCCs. Frequent TP53 mutations were found in pure CCCs and frequent MSI in mixed CCCs, associated with clinical outcome.
    Pure and mixed uterine CCCs are two entities with different clinical outcomes, which could be explained by different molecular backgrounds. These results underline the relevance of both morphological and molecular evaluation, and may assist in tailoring treatment.
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  • 文章类型: Journal Article
    未经证实:软组织肉瘤(STS)是一组异质性肿瘤。为了进行适当的治疗管理,准确的诊断是必要的。在摩洛哥,诊断主要基于形态学和免疫组织化学研究。与其他技术相比,荧光原位杂交(FISH)更容易开发,成本更低。本研究旨在评估实施FISH技术以提高诊断准确性并建立良好分类的可行性和实用性。
    未经评估:这是一项回顾性队列研究。共纳入211例间充质肿瘤。在所有情况下进行苏木精伊红赛峰(HES)染色,然后进行免疫组织化学(IHC)。在所有疑似STS的病例中都进行了FISH。使用的探针是EWSR1、MDM2和SS18。通过ROC曲线法(受试者工作特征)评估FISH和组织病理学测试的性能。我们通过Cohen检验评估了FISH和实时PCR之间的一致性。
    UNASSIGNED:实时PCR技术通过60%的Kappa系数(p=0.035)与FISH测试显示出良好的一致性。FISH能够证实它比组织学/免疫组织化学分析(尤登指数=51%)更准确(尤登指数=91%),以及阳性预测值更高(100%),ROC曲线发现曲线下面积更大0.953(95%CI:0.918-0.988),p=0.000,这支持FISH显示高性能,以提供准确的最终诊断。
    UNASSIGNED:这是FISH对STS进行分子诊断的第一个也是最大的摩洛哥系列。我们的研究表明,石蜡FISH在适当的临床病理背景下使用时,是诊断STS的敏感而特定的辅助工具。
    UNASSIGNED: Soft tissue sarcomas (STS) are a heterogeneous group of tumors. For adequate therapeutic management, an accurate diagnosis is necessary. In Morocco, the diagnosis is essentially based on the morphological and immunohistochemical study. Compared to other techniques, fluorescence in situ hybridization (FISH) is easier to develop and less expensive. This study aims to assess the feasibility and utility of implementing FISH technique to improve diagnostic accuracy and establish a good classification.
    UNASSIGNED: This is a retrospective cohort study. 211 cases of mesenchymal tumors were included. Hematoxylin Eosin Safran (HES) staining was performed in all cases followed by immunohistochemistry (IHC). FISH was performed in all cases with suspected STS. The probes used were EWSR1, MDM2 and SS18. The performance of FISH and histopathological test were evaluated by the ROC curve method (receiver operating characteristic). We evaluated the concordance between FISH and real time PCR by Cohen test.
    UNASSIGNED: The real-time PCR technique showed good agreement with the FISH test by a Kappa coefficient of 60% (p = 0.035). FISH was able to confirm that it is more accurate (Youden\'s Index = 91%) than histological/immunohistochemical analysis (Youden\'s Index = 51%), as well as the positive predictive value was higher (100%) with an ROC curve finding a larger area under the curve of 0.953 (95% CI: 0.918-0.988), p = 0.000 which supports that FISH shows high performance to present an accurate final diagnosis.
    UNASSIGNED: This is the first and the largest Moroccan series for the molecular diagnosis of STS by FISH. Our study shows that paraffin FISH is a sensitive and specific ancillary tool in the diagnosis of STS when used in the appropriate clinicopathological context.
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  • 文章类型: Journal Article
    背景:子宫内膜癌(EC)是发达国家中最常见的妇科恶性肿瘤,也是全球女性中第四常见的恶性肿瘤。治疗EC的基石是手术。临床病理特征目前用于帮助确定个体复发风险和手术后是否需要辅助治疗。尽管如此,在使用形态学分类时,在指定组织学亚型时存在显著的观察者间变异性,揭示了需要更统一的方法。癌症基因组图谱(TCGA)项目基于基因组异常鉴定了4种不同的预后性EC亚型。包括3种免疫组织化学标记(p53,MSH6和PMS2)和1种分子测试(DNA聚合酶epsilon的核酸外切酶结构域的突变分析;POLE)的替代试验允许开发和验证与TCGA分类相关的简化分子分类器。具有预后价值,并且可以很容易地用于临床实践。这种分子分类将EC分为4种亚型:POLE突变,错配修复缺陷,p53异常,没有具体的分子特征.在临床实践中应用这种分类将有助于制定辅助治疗决策。
    目的:本研究的目的是将这种新的分子分类应用于在综合癌症中心接受治疗的EC患者队列。为了评估其在临床实践中的适用性,通过分子亚型评估临床结果,并评估其预后价值。
    方法:在这项回顾性队列研究中,在2013年及之后诊断并在我们机构接受治疗或随访的原发性EC患者,经过明确的手术,将包括在内。人口统计学和临床病理数据将从电子健康记录和病理报告中获得。实验室方法将包括p53和错配修复蛋白的免疫组织化学研究,以及通过基因测序进行POLE突变分析。主要终点是无复发生存率,次要终点是疾病特异性生存率和总生存率。将对变量进行描述性分析。使用Kaplan-Meier方法进行生存分析,并使用对数秩检验比较各组。
    结果:该方案已由波尔图葡萄牙语研究所审查和批准,葡萄牙,伦理委员会于2021年10月;从我们的癌症登记处选择患者于同月开始。总共将包括160名患者。这项工作将呈现现实生活中的结果,这将使人们更好地了解葡萄牙EC种群和整个分子亚组的分布。我们将使用这些结果来了解这种分类在我们人群中的预后价值及其在辅助治疗决策中的作用。这项研究预计将于2022年12月结束。
    结论:这项研究将根据新的分子分类提供有关这些女性结局的重要信息,并将支持在讨论患者需要辅助治疗时使用该方法。
    PRR1-10.2196/34461。
    BACKGROUND: Endometrial carcinoma (EC) is the most common gynecologic malignancy in developed countries and the fourth most frequent in women worldwide. The cornerstone of treatment for EC is surgery. Clinicopathological features are currently used to help determine the individual risk of recurrence and the need for adjuvant treatment after surgery. Nonetheless, there is significant interobserver variability in assigning histologic subtype when using a morphological classification, revealing the need for a more unified approach. The Cancer Genome Atlas (TCGA) project identified 4 distinct prognostic EC subtypes based on genomic abnormalities. Surrogate assays including 3 immunohistochemical markers (p53, MSH6, and PMS2) and 1 molecular test (mutation analysis of the exonuclease domain of DNA polymerase epsilon; POLE) allowed the development and validation of a simplified molecular classifier that correlates with the TCGA classification, has prognostic value, and can easily be used in clinical practice. This molecular classification categorizes EC in 4 subtypes: POLE mutated, mismatch repair-deficient, p53 abnormal, and no specific molecular profile. Applying this classification in clinical practice will help tailor adjuvant treatment decisions.
    OBJECTIVE: The aim of this study is to retrospectively apply this novel molecular classification to a cohort of patients with EC treated in a comprehensive cancer center, to assess its applicability in clinical practice, to evaluate clinical outcomes by molecular subtypes, and to assess its prognostic value.
    METHODS: In this retrospective cohort study, patients with primary EC diagnosed during and after 2013 and treated or followed at our institution, after definite surgery, will be included. Demographic and clinicopathological data will be obtained from electronic health records and from pathology reports. Laboratory methods will include immunohistochemical study of p53 and mismatch repair proteins, as well as POLE mutational analysis by genetic sequencing. The primary end point is recurrence-free survival and secondary end points are disease-specific survival and overall survival. A descriptive analysis of variables will be carried out. Survival analysis will be performed using the Kaplan-Meier method and the groups will be compared using the log-rank test.
    RESULTS: This protocol was reviewed and approved by the Instituto Português de Oncologia do Porto, Portugal, ethics committee in October 2021; patient selection from our cancer registry began the same month. A total of 160 patients will be included. This work will present real-life results that will allow a better understanding of the Portuguese EC population and the distribution of the molecular subgroups throughout. We will use these results to understand the prognostic value of this classification in our population and its role in adjuvant therapy decisions. This study is anticipated to conclude in December 2022.
    CONCLUSIONS: This study will provide important information regarding these women\'s outcomes according to this new molecular classification and will support its use when discussing a patient\'s need for adjuvant treatment.
    UNASSIGNED: PRR1-10.2196/34461.
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  • 文章类型: Journal Article
    小儿脑瘤很少见,建立精确的诊断可能是具有挑战性的。DNA甲基化谱的分析已被证明是对中枢神经系统(CNS)肿瘤进行高精度分类的可靠方法。我们旨在前瞻性分析在瑞典诊断的中枢神经系统肿瘤,评估在未经选择的队列中,将基于DNA甲基化的分类添加到标准儿科脑肿瘤诊断中的临床影响。
    只要有足够的肿瘤材料,在2017-2020年期间在儿童(0-18岁)中诊断出的所有中枢神经系统肿瘤都有资格纳入。使用全基因组DNA甲基化谱分析分析肿瘤,并通过MNP脑肿瘤分类器进行分类。将最初的组织病理学诊断与基于DNA甲基化的分类进行比较。对于不一致的结果,由经验丰富的神经病理学家进行盲法再评估.
    分析了240例基于组织病理学诊断的肿瘤。在78%的病例中达到0.84或更高的高置信度甲基化评分。在69%中,组织病理学诊断得到证实,对于其中一些也精致的,6%不一致,重新评估有利于基于甲基化的分类。在剩下的3%的案例中,甲基化类型为非贡献型.诊断的变化将对所有患者中5%的临床管理产生直接影响。
    将基于DNA甲基化的肿瘤分类整合到常规临床分析中可以改善诊断,并提供对治疗决策重要的分子信息。甲基化分析的结果应在临床和组织病理学信息的背景下解释。
    OBJECTIVE: Paediatric brain tumours are rare, and establishing a precise diagnosis can be challenging. Analysis of DNA methylation profiles has been shown to be a reliable method to classify central nervous system (CNS) tumours with high accuracy. We aimed to prospectively analyse CNS tumours diagnosed in Sweden, to assess the clinical impact of adding DNA methylation-based classification to standard paediatric brain tumour diagnostics in an unselected cohort.
    METHODS: All CNS tumours diagnosed in children (0-18 years) during 2017-2020 were eligible for inclusion provided sufficient tumour material was available. Tumours were analysed using genome-wide DNA methylation profiling and classified by the MNP brain tumour classifier. The initial histopathological diagnosis was compared with the DNA methylation-based classification. For incongruent results, a blinded re-evaluation was performed by an experienced neuropathologist.
    RESULTS: Two hundred forty tumours with a histopathology-based diagnosis were profiled. A high-confidence methylation score of 0.84 or more was reached in 78% of the cases. In 69%, the histopathological diagnosis was confirmed, and for some of these also refined, 6% were incongruent, and the re-evaluation favoured the methylation-based classification. In the remaining 3% of cases, the methylation class was non-contributory. The change in diagnosis would have had a direct impact on the clinical management in 5% of all patients.
    CONCLUSIONS: Integrating DNA methylation-based tumour classification into routine clinical analysis improves diagnostics and provides molecular information that is important for treatment decisions. The results from methylation profiling should be interpreted in the context of clinical and histopathological information.
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  • 文章类型: Journal Article
    评估最新的ESGO子宫内膜癌分子分类指南对法国队列治疗策略的潜在影响。
    所有患者在1月1日之前接受治疗,2014年和2020年12月31日在克雷泰尔社区医院中心治疗子宫内膜癌(CHIC,法国)是从我们前瞻性维护的数据库中选择的。检查所有术后样本以确认组织学亚型,子宫肌层浸润,细胞核分级和淋巴管栓子的存在。首先通过免疫组织化学对p53,MLH1,MSH2,MSH6,PMS2基因进行分析,然后进行系统的POLE测序以鉴定基因突变。评估了最新的ESGO2020指南对辅助治疗的影响,手术策略,和生存。
    对80例患者进行了分析,包括70%的NSMP(n=56),13.75%MSI(n=11),10%p53突变(n=8)和6.25%POLEmut突变(n=5)。共有21例患者(26.3%)使用最新的ESGO分类进行了重新分类。分类为低风险或晚期/转移性疾病的患者未使用分子分析进行重新分类。分子分析和最新的ESGO分类对最初分类为中等风险的患者具有最重要的影响-被重新分类为中等风险(10/23)和低风险(4/23)。根据2020年ESGO分类,9例患者(11.3%)被过度治疗:低危组6例(4例接受阴道近距离放射治疗和2例外部放射治疗),中危组3例(3例接受外部放射治疗和1例接受化疗)。我们队列中的所有患者都不会使用2020ESGO分类进行治疗。p53突变组的患者最有可能出现复发(37.5%,3/8),POLE突变的患者均未复发。
    使用分子诊断和最新的ESGO指南,大约四分之一的患者被重新分类为更准确的预后组,这可以减少辅助治疗的使用以避免发病率。
    To evaluate the potential impact of the latest ESGO guidelines for endometrial cancer with molecular classification on the management strategy in a French cohort.
    All patients treated between January 1st, 2014 and December 31, 2020 for an endometrial cancer at the Centre Hospitalier Intercommunal de Créteil (CHIC, FRANCE) were selected from our prospectively maintained database. All postoperative samples were reviewed to confirm histological subtype, myometrial infiltration, cytonuclear grade and presence of lymphovascular emboli. Analysis of p53, MLH1, MSH2, MSH6, PMS2 genes was performed by immunohistochemistry first then a systematic POLE sequencing was performed to identify gene mutation. The impact of the latest ESGO 2020 guidelines was assessed regarding adjuvant therapy, surgical strategy, and survival.
    Eighty patients were analyzed, including 70% NSMP (n = 56), 13.75% MSI (n = 11), 10% p53 mutated (n = 8) and 6.25% POLEmut (n = 5). A total of 21 patients (26.3%) were reclassified using the latest ESGO classification. Patients classified at low risk or with advanced / metastatic disease were not reclassified using molecular analysis. Molecular analysis and the latest ESGO classification had the most important impact on patients initially classified at intermediate - high risk that were reclassified in intermediate (10/23) and in low (4/23) risk. Nine patients (11.3%) were overtreated according to the 2020 ESGO classification: six patients in the low - risk group (4 received vaginal brachytherapy and 2 external radiotherapy) and three in the intermediate risk group (3 received external irradiation and 1 received chemotherapy). None of the patients in our cohort would have been undertreated using the 2020 ESGO classification. Patients within the p53 mutated group were the most likely to experience recurrence (37.5%, 3/8) and none of the patients POLE mutated recurred.
    Around one in 4 patients were reclassified in a more accurate prognostic group using molecular diagnosis and the latest ESGO guidelines which could decrease the use of adjuvant therapies to spare morbidity.
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