Hydrophobic and Hydrophilic Interactions

疏水和亲水相互作用
  • 文章类型: Journal Article
    跨膜离子通道经常通过在失活时形成孔衬螺旋的束交叉来调节离子渗透。所产生的物理收缩被认为是对离子渗透施加主要自由能屏障的事实上的门。有趣的是,许多离子通道还包含由束交叉封闭的高度疏水的内孔,即使在没有物理收缩的情况下,也会发生自发的去湿并产生“蒸汽屏障”以阻止离子流。使用原子模拟,我们表明,疏水门控和束交叉机制在人TRPV4通道中共存并相互补充。特别是,下孔的单个亲水突变可以增加孔的水合作用,并将离子渗透自由能障减少约一半,而不影响束穿过。我们认为,疏水门控可能在具有疏水内孔的其他束交叉离子通道中起关键作用。
    Transmembrane ion channels frequently regulate ion permeation by forming bundle crossing of the pore-lining helices when deactivated. The resulting physical constriction is believed to serve as the de facto gate that imposes the major free energy barrier to ion permeation. Intriguingly, many ion channels also contain highly hydrophobic inner pores enclosed by bundle crossing, which can undergo spontaneous dewetting and give rise to a \"vapor barrier\" to block ion flow even in the absence of physical constriction. Using atomistic simulations, we show that hydrophobic gating and bundle-crossing mechanisms co-exist and complement one and another in the human TRPV4 channel. In particular, a single hydrophilic mutation in the lower pore can increase pore hydration and reduce the ion permeation free energy barrier by about half without affecting the bundle crossing. We believe that hydrophobic gating may play a key role in other bundle-crossing ion channels with hydrophobic inner pores.
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  • 文章类型: Journal Article
    我们分析了旨在自组装成防污涂层的B-M-E三嵌段蛋白的模块性。以前,我们已经表明,当B被认为是二氧化硅结合肽时,该设计在二氧化硅表面上表现良好,M是热稳定的三聚体结构域,E是不带电荷的弹性蛋白样多肽(ELP),E=(GSGVP)40。这里,我们证明,我们可以通过选择不同的固体结合肽作为结合域B来调节形成涂层的底物的性质,并且我们可以通过选择不同的亲水嵌段E来调节防污特性。为了达到金表面的防污涂层,作为结合块B,我们使用金结合肽GBP1(具有序列MHGKTQATSGTIQS),虽然我们用不同长度的两性离子ELP代替防污嵌段E,EZn=(GDGVP-GKGVP)n/2,其中n=20、40或80。我们发现,即使是具有最短E块的B-M-E蛋白也可以在金表面上形成涂层,对1%人血清(HS)具有出色的防污性,对10%HS具有合理的防污性。这表明B-M-E三嵌段蛋白可以容易地适应于在固体结合肽序列可用的任何基材上形成防污涂层。
    We analyze modularity for a B-M-E triblock protein designed to self-assemble into antifouling coatings. Previously, we have shown that the design performs well on silica surfaces when B is taken to be a silica-binding peptide, M is a thermostable trimer domain, and E is the uncharged elastin-like polypeptide (ELP), E = (GSGVP)40. Here, we demonstrate that we can modulate the nature of the substrate on which the coatings form by choosing different solid-binding peptides as binding domain B and that we can modulate antifouling properties by choosing a different hydrophilic block E. Specifically, to arrive at antifouling coatings for gold surfaces, as binding block B we use the gold-binding peptide GBP1 (with the sequence MHGKTQATSGTIQS), while we replace the antifouling blocks E by zwitterionic ELPs of different lengths, EZn = (GDGVP-GKGVP)n/2, with n = 20, 40, or 80. We find that even the B-M-E proteins with the shortest E blocks make coatings on gold surfaces with excellent antifouling against 1% human serum (HS) and reasonable antifouling against 10% HS. This suggests that the B-M-E triblock protein can be easily adapted to form antifouling coatings on any substrate for which solid-binding peptide sequences are available.
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  • 文章类型: Journal Article
    P.stratiotes是水生植物的一个例子,具有复杂的结构,使其能够漂浮。它生长迅速,大量成为一种不受欢迎的植物,作为一种入侵物种,应该从环境中去除。描述水滴飞溅在P.stratiotes叶子上的动力学可以有助于增加对其行为的了解,并找到根除该植物或将其用于环境的替代方法。P.stratiotes的不可润湿表面呈现复杂的结构,即,简单的单列毛状体,还有脊和静脉。实验包括分析放置在水面上并由高速摄像机记录的叶子上的水滴撞击。根据录音,进行了定量和定性分析。撞击叶子后,水滴扩散,直到达到最大表面积,并在现象的初始阶段伴随着早期液滴的喷射。此后,观察到水行为的三种情况:(I)液滴后退和稳定,(ii)后期形成的液滴后退和喷射作为叶片弹性变形的效果,和(iii)液滴分裂并喷出晚期液滴。结果表明,以韦伯数表示的撞击滴的动能增加和复杂的叶片表面对飞溅的过程有影响。P.stratiotes叶的简单单列毛状体和下落的高能量是早期液滴的形成和特征的原因。脊和脉的存在以及叶片的机械响应对后期液滴的发生有影响。
    Pistia stratiotes is an aquatic plant with a complex structure that allows it to stay afloat. It grows quickly, and in large numbers becomes an undesirable plant as an invasive species. Describing the dynamics of a water drop splash on P. stratiotes leaves can contribute to increasing knowledge of its behavior and finding alternative methods for eradicating it or using it for the benefit of the environment. The non-wettable surface of P. stratiotes presents a complex structure-simple uniseriate trichomes and also ridges and veins. We analyzed the drop impact on a leaf placed on the water surface and recorded it by high-speed cameras. Based on the recordings, quantitative and qualitative analyses were performed. After impacting the leaf, the water drop spread until it reached its maximum surface area accompanied by the ejection of early droplets in the initial stage. Thereafter, three scenarios of water behavior were observed: (i) drop receding and stabilization; (ii) drop receding and ejection of late droplets formed in the later stage as an effect of elastic deformation of the leaf; and (iii) drop breaking apart and ejection of late droplets. The results indicated that the increasing kinetic energy of the impacting drops expressed by the Weber number and the complex leaf surface have an effect on the course of the splash. The simple uniseriate trichomes of the P. stratiotes leaf and the high energy of the falling drops were responsible for the formation and characteristics of the early droplets. The presence of ridges and veins and the leaf\'s mechanical response had an impact on the occurrence of late droplets.
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  • 文章类型: Journal Article
    在这项工作中,使用非离子模型表面活性剂1-辛醇作为分析物,研究了四种不同的市售偏振剂的行为。建立了直接和间接极化转移途径比例比较的相对方法,尽管自由基浓度或样品量不同,但可以直接比较不同自由基和1-辛醇分子不同部分的极化效率。通过这种方法,可以证明亲水性是极化从极化剂转移到分析物的方式的关键因素。这些发现通过确定累积时间Tb,说明极化剂的选择在确保最佳的极化转移中起着至关重要的作用,因此对于DNP增强的NMR测量可能的最大增强量。
    In this work, the behavior of four different commercially available polarizing agents is investigated employing the non-ionic model surfactant 1-octanol as analyte. A relative method for the comparison of the proportion of the direct and indirect polarization transfer pathways is established, allowing a direct comparison of the polarization efficacy for different radicals and different parts of the 1-octanol molecule despite differences in radical concentration or sample amount. With this approach, it could be demonstrated that the hydrophilicity is a key factor in the way polarization is transferred from the polarizing agent to the analyte. These findings are confirmed by the determination of buildup times Tb, illustrating that the choice of polarizing agent plays an essential role in ensuring an optimal polarization transfer and therefore the maximum amount of enhancement possible for DNP enhanced NMR measurements.
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  • 文章类型: Journal Article
    高度有序,直的淀粉样纤维很容易使自己的结构确定技术,因此已被广泛表征。然而,不太有序的卷曲原纤维仍然相对缺乏研究,而其具体特征背后的结构组织仍然知之甚少。我们发现,示例性卷曲原纤维形成蛋白卵清蛋白含有多个易聚集区域(APR),当作为肽分离时或当通过水解从全长蛋白切除时,其形成直的原纤维。在完整的全长蛋白质的背景下,然而,分离APRs的区域促进了卷曲原纤维的形成。事实上,先前报道的卷曲原纤维形成蛋白的荟萃分析表明,与直接原纤维形成蛋白相比,它们的APRs间明显更长,更疏水,表明它们可能会导致淀粉样蛋白状态的菌株。因此,驱动卷曲原纤维形成的APRs间可能不仅适用于我们的模型蛋白质,而且构成了更一般的机制。
    Highly ordered, straight amyloid fibrils readily lend themselves to structure determination techniques and have therefore been extensively characterized. However, the less ordered curly fibrils remain relatively understudied, and the structural organization underlying their specific characteristics remains poorly understood. We found that the exemplary curly fibril-forming protein ovalbumin contains multiple aggregation prone regions (APRs) that form straight fibrils when isolated as peptides or when excised from the full-length protein through hydrolysis. In the context of the intact full-length protein, however, the regions separating the APRs facilitate curly fibril formation. In fact, a meta-analysis of previously reported curly fibril-forming proteins shows that their inter-APRs are significantly longer and more hydrophobic when compared to straight fibril-forming proteins, suggesting that they may cause strain in the amyloid state. Hence, inter-APRs driving curly fibril formation may not only apply to our model protein but rather constitute a more general mechanism.
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  • 文章类型: Journal Article
    亲水性聚合物栓塞(HPE)是使用聚合物涂层血管内装置的罕见医源性并发症,这可能会影响包括皮肤在内的多个器官系统。在这里,我们介绍了1例出现皮肤出疹并继发于局部HPE的相关神经系统表现的患者.这是一个潜在的诊断不足,危及生命的并发症,内科医生在评估血管内手术患者的皮肤出疹时,应考虑HPE.
    Hydrophilic polymer embolism (HPE) is a rare iatrogenic complication of the use of polymer-coated intravascular devices, which may affect several organ systems including the skin. Herein, we present a patient who developed a cutaneous eruption with associated neurologic manifestations secondary to localized HPE. This is a potentially underdiagnosed, life-threatening complication and physicians should consider HPE when evaluating skin eruptions in patients who have undergone endovascular procedures.
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  • 文章类型: Journal Article
    天然糖苷配基,植物中含有糖苷的主要成分,在各种疾病的治疗中发挥了重要作用。然而,它们的生物利用度受其水溶性差的限制。与以前需要使用新的外来材料的努力相反,这些材料可能会引起对生物相容性的关注,我们报道了第一例无赋形剂纳米分散体,其中不溶性甘草次酸(GA)与其两亲性母体药物甘草酸二铵(DG)组装成水分散性纳米分散体(粒径为130.8nm,包封率为91.74%).该策略使GA的水表观溶解度大大提高了数百倍,达到549.0μg/mL,体外累积溶出百分比在5分钟内超过80%。形成机理的研究表明,OH,C-O和C=O基团拉伸峰在GA-DG纳米分散体的FTIR光谱中移动,而COOH峰(δCOOH12.19ppm)在GA-DG纳米分散体的1HNMR光谱中消失,表明GA上的羧基可以与溶液中DG的羟基相互作用。分子动力学模拟表明,疏水相互作用和氢键相互作用都有助于GA和DG分子在水溶液中的共组装。大鼠的口服药代动力学研究表明,与GA相比,这种纳米分散体的Cmax和AUC0-t显着增加2.45倍和3.45倍。分别。因此,这一战略,采用两亲性糖苷作为赋形剂来制备纳米分散体,不使用新材料,为疏水糖苷配基药物的进一步应用铺平了道路。
    Natural aglycones, a major ingredient accompanied by glycosides in plants, have played an important role in the treatment of various diseases. However, their bioavailability is limited by their poor water solubility. In contrast to previous efforts that required the use of new exotic materials which may raise concerns about biocompatibility, we report the first case of excipient-free nanodispersions in which an insoluble glycyrrhetinic acid (GA) assembled with its amphiphilic parent drug diammonium glycyrrhizinate (DG) into water-dispersible nanodispersions (130.8 nm for particle size and 91.74% for encapsulation efficiency). This strategy largely increased GA\'s water apparent solubility by hundreds of times to 549.0 μg/mL with a high cumulative dissolution percentage in vitro greater than 80% in 5 min. The study on the formation mechanism showed that the OH, C-O and C=O group stretching peaks shifted in the FTIR spectra of GA-DG nanodispersions, while the COOH peak (δ COOH 12.19 ppm) disappeared in the 1H NMR spectrum of GA-DG nanodispersions, indicating that carboxyl groups on GA may interact with the hydroxyl groups of DG in solution. Molecular dynamics simulations suggested that both hydrophobic interactions and hydrogen-bond interactions contribute to the coassembly of GA and DG molecules in aqueous solution. Oral pharmacokinetic studies in rats demonstrated that such nanodispersions have a significant increase in Cmax and AUC0-t of 2.45- and 3.45-fold compared with those for GA, respectively. Therefore, this strategy, employing amphiphilic glycosides as excipients to prepare nanodispersions, not using new materials, paves the way for the further application of hydrophobic aglycone drugs.
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  • 文章类型: Journal Article
    脂质中间相能够掺入和释放过多的分子,从疏水性药物到小的亲水性蛋白质,因此它们已被广泛用作药物递送系统。然而,它们的3-5纳米水通道不允许释放大的亲水分子,如单克隆抗体和治疗性蛋白质。为了克服这个主要的几何约束,我们通过混合单酰基甘油脂质设计了一种凝胶,FDA通常认为对人类和/或动物使用是安全的,和磷脂,以获得具有适于承载和进一步释放大分子的溶胀水通道的材料。apoferritin,一种具有固有肿瘤靶向特性的12纳米纳米蛋白质,能够掺入几种分子,在此选择作为要嵌入生物相容性凝胶中的亲水性模型蛋白。当完全浸入释放介质中时,具有22nm的溶胀水通道的中间相,由单油酸甘油酯组成,并掺杂了5摩尔%的DOPS和10摩尔%的Chol,使我们实现了60%的蛋白质释放,与使用仅由单油酸酯组成的非溶胀LMPs相比,高120倍。因此,制剂可以局部施用于直肠或阴道粘膜,减少通常与肠胃外施用生物治疗剂相关的缺点。这种方法将为其他生物大分子(包括人类铁蛋白,单克隆抗体和抗体药物缀合物)在局部应用例如直肠或阴道癌容易达到的那些疾病中。
    Lipid mesophases are able to incorporate and release a plethora of molecules, spanning from hydrophobic drugs to small hydrophilic proteins and therefore they have been widely used as drug delivery systems. However, their 3-5 nm water channels do not allow the release of large hydrophilic molecules such as monoclonal antibodies and therapeutic proteins. To overcome this major geometrical constraint, we designed a gel by mixing monoacylglycerol lipids, generally recognized as safe for human and/or animal use by FDA, and phospholipids, to obtain a material with swollen water channels suitable to host and further release macromolecules. Apoferritin, a 12 nm nanocage protein with intrinsic tumor-targeting properties able to incorporate several molecules, was selected here as the hydrophilic model protein to be embedded in the biocompatible gel. When immersed completely in the release media, mesophases with a swollen water channel of 22 nm, composed of monoolein and doped with 5 mole% of DOPS and 10 mole% of Chol allowed us to achieve a protein release of 60%, which is 120 times higher with respect to that obtained by employing non swollen-LMPs composed only of monoolein. Thus, the formulation can be administered locally to the rectal or vaginal mucosa, reducing the drawbacks often associated with the parenteral administration of bio-therapeutics. This approach would pave the way for the local application of other biomacromolecules (including human ferritin, monoclonal antibodies and antibody drug-conjugates) in those diseases easily reachable by a local application such as rectal or vaginal cancer.
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  • 文章类型: Journal Article
    碳纳米管(CNTs)是一种独特且有前途的纳米材料,具有广泛的应用,比如生物传感器,先进的药物输送系统和生物技术。碳纳米管与蛋白质快速结合,这导致在纳米材料表面周围形成称为“蛋白质电晕”的蛋白质涂层。这阻碍了它们作为药物载体的应用并影响生物大分子的性质。本工作的重点是研究两种血红素蛋白的热稳定性和分子水平相互作用,血红蛋白(Hb)和肌红蛋白(Mb),在存在羧化官能化多壁CNT(CA-MWCNT)的情况下。通过目前的研究,已采取以下步骤通过一系列光谱技术和差示扫描量热法(DSC)区分亲水表面CA-MWCNT对血红素蛋白的生物相容性。紫外可见和稳态荧光光谱法用于揭示添加CA-MWCNT后血红素蛋白的芳香族氨基酸残基的变化。圆二色性光谱(CD)显示了在纳米材料存在下蛋白质天然结构的改变。在动态光散射(DLS)中观察到蛋白质CA-MWCNTs系统的大小的巨大增加,这清楚地表明了蛋白质电晕的形成。出乎意料的是,两种蛋白质与CA-MWCNT的相互作用不同,这在CD光谱和DSC中观察到。在CA-MWCNT的存在下,观察到Hb的转变温度(Tm)升高,而对于Mb,Tm值减小。在分子尺度上与蛋白质的不同相互作用可能是这种意外行为的原因。从今以后,本研究结果有助于在开发之前用血红素蛋白冠形成的想法设计下一代药物载体纳米材料。
    Carbon nanotubes (CNTs) are one of the unique and promising nanomaterials that possess plenty of applications, such as biosensors, advanced drug delivery systems and biotechnology. CNTs bind rapidly with proteins, which result in the formation of a protein coating layer known as a \"protein corona\" around the surface of the nanomaterial. This hinders their applications as a drug carrier and influences the properties of biological macromolecules. The present work focuses on studying the thermal stability and molecular level interactions of two heme proteins, hemoglobin (Hb) and myoglobin (Mb), in the presence of carboxylated functionalized multi-walled CNTs (CA-MWCNTs). Through the current study, the following steps have been taken to distinguish the biocompatibility of the hydrophilic surface CA-MWCNTs for heme proteins via a series of spectroscopic techniques and differential scanning calorimetry (DSC). UV-Visible and steady-state fluorescence spectroscopy were used to reveal changes in the aromatic amino acid residues of heme proteins upon the addition of CA-MWCNTs. Circular dichroism spectroscopy (CD) shows the alteration in the native structure of proteins in the presence of the nanomaterial. A tremendous increase in the size of the protein CA-MWCNTs system is observed in dynamic light scattering (DLS), which clearly manifests the protein corona formation. Unexpectedly, both proteins interact differently with CA-MWCNTs, which is observed in CD spectroscopy and DSC. In the presence of CA-MWCNTs, an increase in the transition temperature (Tm) was observed for Hb, while the Tm value decreases for Mb. Different interactions with proteins at the molecular scale may be the reason for this unexpected behavior. Henceforth, the present results can help in the design of the next-generation drug carrier nanomaterials with the idea of the heme protein corona formation prior to development.
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  • 文章类型: Journal Article
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