Campylobacter

弯曲杆菌
  • 文章类型: Journal Article
    迅速识别和诊断胃肠道感染对于及时治疗至关重要,预防并发症,降低医院传播的风险。计算机断层扫描的放射学外观可能为胃肠道感染的病因提供重要线索。我们旨在描述基于计算机断层扫描诊断为弯曲杆菌的患者的特征,瑞典南部的沙门氏菌或志贺氏菌感染。
    这是一项回顾性观察性的基于人群的队列研究,于2019年至2022年在斯科恩进行,瑞典南部,一个拥有140万人口的地区。使用临床微生物学系的数据与放射科的数据相结合,我们确定了所有因怀疑弯曲杆菌而在采样前两天和采样后长达七天接受腹部CTA计算机断层扫描的患者,研究期间的沙门氏菌或志贺氏菌。
    在研究期间对213名患者进行了215次CTA扫描。纳入患者的中位年龄为45岁(范围11-86岁),54%(114/213)的患者是女性。在215个CTA中,80%(n=172)由于弯曲杆菌和20%(n=43)由于沙门氏菌肠炎。在研究期间未对任何诊断为志贺氏菌的个体进行CTA。弯曲杆菌和沙门氏菌感染的放射学表现没有统计学上的显着差异。
    弯曲杆菌和沙门氏菌感染的最常见位置是盲肠,其次是升结肠。肠壁水肿,受影响的粘膜的对比负荷,和肠脂肪绞合是两种感染的典型特征。弯曲杆菌和沙门氏菌的CTA特征相似,并且不能用于可靠地区分不同的感染病因。
    UNASSIGNED: Swift identification and diagnosis of gastrointestinal infections are crucial for prompt treatment, prevention of complications, and reduction of the risk of hospital transmission. The radiological appearance on computed tomography could potentially provide important clues to the etiology of gastrointestinal infections. We aimed to describe features based on computed tomography of patients diagnosed with Campylobacter, Salmonella or Shigella infections in South Sweden.
    UNASSIGNED: This was a retrospective observational population-based cohort study conducted between 2019 and 2022 in Skåne, southern Sweden, a region populated by 1.4 million people. Using data from the Department of Clinical Microbiology combined with data from the Department of Radiology, we identified all patients who underwent computed tomography of the abdomen CTA two days before and up to seven days after sampling due to the suspicion of Campylobacter, Salmonella or Shigella during the study period.
    UNASSIGNED: A total of 215 CTAs scans performed on 213 patients during the study period were included in the study. The median age of included patients was 45 years (range 11-86 years), and 54% (114/213) of the patients were women. Of the 215 CTAs, 80% (n = 172) had been performed due to Campylobacter and 20% (n = 43) due to Salmonella enteritis. CTA was not performed for any individual diagnosed with Shigella during the study period. There were no statistically significant differences in the radiological presentation of Campylobacter and Salmonella infections.
    UNASSIGNED: The most common location of Campylobacter and Salmonella infections was the cecum, followed by the ascending colon. Enteric wall edema, contrast loading of the affected mucosa, and enteric fat stranding are typical features of both infections. The CTA characteristics of Campylobacter and Salmonella are similar, and cannot be used to reliably differentiate between different infectious etiologies.
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  • 文章类型: Journal Article
    弯曲杆菌属的菌血症很少见,与弯曲杆菌肠炎相比,对病程的了解有限。
    这是一项基于人群的回顾性研究。通过实验室数据库确定了瑞典南部在2015年至2022年之间发生的弯曲杆菌菌血症和弯曲杆菌肠炎的发作,同时血液培养结果为阴性。检查了医疗记录,比较了菌血症性弯曲杆菌感染患者与粪便中发现弯曲杆菌的患者之间的临床特征。
    该研究包括29例弯曲杆菌的细菌感染和119例粪便中发现的弯曲杆菌。弯曲杆菌菌血症患者的年龄明显高于肠炎患者(72岁[IQR,58-62]vs58岁[IQR,33-67],P<.0001)。11例菌血症患者在血液培养后48小时内出现败血症,并且没有患者在入院后30天内死亡。
    弯曲杆菌菌血症很少见,主要发生在有合并症的老年人中。与局限于胃肠道的弯曲杆菌感染相比,菌血症性弯曲杆菌感染患者年龄较大,似乎更容易发生败血症.在弯曲杆菌的菌血症病例中,可能没有经典的胃肠炎症状。
    UNASSIGNED: Bacteremia with species in the genus Campylobacter is rare, and knowledge of the disease course in comparison with Campylobacter enteritis is limited.
    UNASSIGNED: This is a retrospective population-based study. Episodes of Campylobacter bacteremia and Campylobacter enteritis with a concurrent negative blood culture result that occurred between 2015 and 2022 in southern Sweden were identified through the laboratory database. Medical records were reviewed, and clinical features between patients with bacteremic Campylobacter infections were compared with patients with Campylobacter spp found in feces.
    UNASSIGNED: The study included 29 bacteremic infections with Campylobacter and 119 cases of Campylobacter spp found in feces. Patients with Campylobacter bacteremia were significantly older than those with enteritis (72 years [IQR, 58-62] vs 58 years [IQR, 33-67], P < .0001). Eleven patients with bacteremia developed sepsis within 48 hours from blood culturing, and no patient died within 30 days from hospital admission.
    UNASSIGNED: Campylobacter bacteremia is rare and occurs mainly in the elderly with comorbidities. In comparison with Campylobacter infections limited to the gastrointestinal tract, patients with bacteremic Campylobacter infections are older and seem more prone to develop sepsis. Classical gastroenteritis symptoms in bacteremic cases with Campylobacter may be absent.
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  • 文章类型: Journal Article
    Poultry meat contaminated with Campylobacter, a major bacterial cause of foodborne gastroenteritis worldwide, is considered the primary source of human campylobacteriosis. Thus, reduction or elimination of Campylobacter in poultry production will have a significant impact on food safety and public health. Despite the significant progress made over the last decades, many puzzles remain about the epidemiology of Campylobacter on poultry farms, hampering the development of an effective control strategy. This longitudinal study was conducted to determine the prevalence and genetic diversity of Campylobacter in a U.S. commercial broiler production farm system. Cecal contents (15 samples/flock) and boot swabs (3 samples/flock) were collected from approximately 6-wk-old birds from 406 conventional broiler flocks reared in 53 houses on 15 farms (located within a relatively close geographic proximity and managed by the same poultry integrator) for up to eight consecutive production cycles and cultured for Campylobacter. Pulsed-field gel electrophoresis was used to investigate the genetic diversity of the Campylobacter jejuni isolates recovered from the cecal contents. The prevalence of Campylobacter at the farm, house, and flock levels were found to be 93% (14/15), 79% (42/53), and 47% (192/406), respectively. Campylobacter prevalence varied remarkably among different farms and flocks, with some farms or houses testing consistently negative while others being positive all the time over the entire study period. Campylobacter isolation rate changed significantly by sample type (higher by cecal contents vs. boot swabs) and season/production cycle (higher in spring vs. other seasons). The majority (88%; 2364/2675) of the isolates were identified as C. jejuni, and almost all the rest (11%; 303/2675) were Campylobacter coli. Genotyping showed limited diversity within a flock and suggested persistence of some C. jejuni clones over multiple production cycles on the same farm. In conclusion, this study indicated that although Campylobacter prevalence was overall high, there were marked differences in the prevalence among the broiler flocks or farms tested. Future studies aimed at identification of potential risk factors associated with differential Campylobacter status are warranted in order to develop effective on-farm interventions.
    Estudio longitudinal sobre Campylobacter en parvadas comerciales de pollo de engorde criados convencionalmente en los Estados Unidos: prevalencia y diversidad genética. Los productos cárnicos de origen avícola contaminado con Campylobacter, que es una importante causa bacteriana de gastroenteritis transmitida por alimentos en todo el mundo, se consideran la principal fuente de campilobacteriosis humana. Por lo tanto, la reducción o eliminación de Campylobacter en la producción avícola tendrá un impacto significativo en la seguridad alimentaria y en la salud pública. A pesar de los importantes avances realizados en las últimas décadas, persisten muchos enigmas sobre la epidemiología de Campylobacter en las granjas avícolas, lo que obstaculiza el desarrollo de una estrategia de control eficaz. Este estudio longitudinal se realizó para determinar la prevalencia y la diversidad genética de Campylobacter en un sistema de granja de producción comercial de pollos de engorde en los Estados Unidos. Se recogieron contenidos cecales (15 muestras/parvada) y cubre botas de arrastre (tres muestras/parvada) de aves de aproximadamente seis semanas de edad de 406 parvadas de pollos de engorde convencionales criadas en 53 casetas de 15 granjas (ubicadas dentro de una proximidad geográfica relativamente cercana y manejadas por el mismo integrador avícola) durante ocho ciclos de producción consecutivos y con cultivo para Campylobacter. Se utilizó electroforesis en gel de campo con pulsasiones para investigar la diversidad genética de los aislados de Campylobacter jejuni recuperados del contenido cecal. Se encontró que la prevalencia de Campylobacter a nivel de granja, caseta y parvada era del 93% (14/15), 79% (42/53) y 47% (192/406), respectivamente. La prevalencia de Campylobacter varió notablemente entre diferentes granjas y rebaños, y algunas granjas o casetas dieron resultados consistentemente negativos mientras que otras dieron positivo todo el tiempo durante todo el período del estudio. La tasa de aislamiento de Campylobacter cambió significativamente según el tipo de muestra (mayor con muestras de contenido cecal en comparación con los cubre botas de arrastre) y la estación/ciclo de producción (mayor en primavera frente a otras estaciones). La mayoría (88%; 2364/2675) de los aislados se identificaron como C. jejuni, y casi todo el resto (11%; 303/2675) fueron Campylobacter coli. La genotipificación mostró una diversidad limitada dentro de una parvada y sugirió la persistencia de algunos clones de C. jejuni durante múltiples ciclos de producción en la misma granja. En conclusión, este estudio indicó que, aunque la prevalencia de Campylobacter fue alta en general, hubo marcadas diferencias en la prevalencia entre las parvadas o granjas de pollos de engorde analizadas. Se justifica la conducción de estudios futuros destinados a identificar posibles factores de riesgo asociados con el estado diferencial de Campylobacter para desarrollar intervenciones efectivas en las granjas.
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  • 文章类型: Journal Article
    解开天气对传染病传播的影响对健康保护至关重要,准备和预防。因为天气因素是共同的,部分相关的,我们以弯曲杆菌病作为案例研究,利用地理学来分离出各个天气参数对其他季节变量的影响。弯曲杆菌感染遍布全球,是发达国家最常见的细菌性食源性疾病,它们表现出一致但特定国家的季节性。我们开发了一种新的条件发生方法,基于经典的分层,从长远来看,高分辨率,20年来,英格兰和威尔士约有100万例弯曲杆菌病病例与诊断实验室所在地的当地气象数据集相关联。在8°-15°范围内,温度每升高5°(摄氏度),弯曲杆菌病的预测发病率每百万人增加1例。在该范围之外观察到有限的关联。与日长有很强的关联。随着相对湿度在75-80%的区域内,病例趋于增加,而与降雨和风速的关联较弱。该方法能够检查多个因素,并对复杂趋势的出现进行建模,例如,5月至6月英格兰和威尔士弯曲杆菌病的持续急剧增加及其空间变异性。这种透明和直接的方法导致准确的预测,而不依赖于回归模型和/或假设特定的参数。分析的关键输出是对特定当地天气因素条件下的疾病发病率的全面现象学描述。这项研究对于推断弯曲杆菌病的传播机制至关重要;例如,通过模拟假定机制的条件发生率,并将其与现象学模式进行比较作为基准。这些发现挑战了这一假设,通常用统计模型制作,弯曲杆菌病等疾病的转化平均感染率只是环境变量的累加和组合。
    Disentangling the impact of the weather on transmission of infectious diseases is crucial for health protection, preparedness and prevention. Because weather factors are co-incidental and partly correlated, we have used geography to separate out the impact of individual weather parameters on other seasonal variables using campylobacteriosis as a case study. Campylobacter infections are found worldwide and are the most common bacterial food-borne disease in developed countries, where they exhibit consistent but country specific seasonality. We developed a novel conditional incidence method, based on classical stratification, exploiting the long term, high-resolution, linkage of approximately one-million campylobacteriosis cases over 20 years in England and Wales with local meteorological datasets from diagnostic laboratory locations. The predicted incidence of campylobacteriosis increased by 1 case per million people for every 5° (Celsius) increase in temperature within the range of 8°-15°. Limited association was observed outside that range. There were strong associations with day-length. Cases tended to increase with relative humidity in the region of 75-80%, while the associations with rainfall and wind-speed were weaker. The approach is able to examine multiple factors and model how complex trends arise, e.g. the consistent steep increase in campylobacteriosis in England and Wales in May-June and its spatial variability. This transparent and straightforward approach leads to accurate predictions without relying on regression models and/or postulating specific parameterisations. A key output of the analysis is a thoroughly phenomenological description of the incidence of the disease conditional on specific local weather factors. The study can be crucially important to infer the elusive mechanism of transmission of campylobacteriosis; for instance, by simulating the conditional incidence for a postulated mechanism and compare it with the phenomenological patterns as benchmark. The findings challenge the assumption, commonly made in statistical models, that the transformed mean rate of infection for diseases like campylobacteriosis is a mere additive and combination of the environmental variables.
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  • 文章类型: Observational Study
    记录肠胃炎爆发对当地初级卫生保健服务的影响,与控制期相比。
    对照观察性研究,数据来自爆发和控制期。从全科医生(GP)的电子病历(EMR)和非工作时间(OOH)服务中获得的数据。电话数据来自OOH服务的电话记录。
    在Askøy市爆发弯曲杆菌病,2019年挪威。超过2000人被感染。
    在爆发和控制期间与全科医生和OOH服务接触的患者。
    在爆发和控制期间,患者与全科医生和OOH服务接触。
    与控制期相比,疫情期间接触者增加了36%(4798vs.3528),OOH服务处理了78%与疫情相关的联系人。电话咨询是管理与初级保健联系增加的主要方法,OOH服务和日间全科医生(OR3.73CI:[3.24-4.28])。0-4岁儿童在暴发期间增加了初级保健的使用(OR1.51CI:[1.28-1.78])。全科医生转诊了25%,OOH服务转诊了70例住院病例中的75%。
    OOH服务在爆发期间处理了大多数患者,在白天一般实践的支持下。疫情导致转向电话咨询作为提供护理的一种手段。在疫情爆发期间,幼儿显著增加了对初级保健的使用。
    UNASSIGNED: Document the impact of an outbreak of gastroenteritis on local primary health care services, compared to a control period.
    UNASSIGNED: Controlled observational study with data from the outbreak and a control period. Data obtained from electronic medical records (EMR) of general practitioners (GPs) and the out-of-hours (OOH) service. Telephone data from the OOH service\'s telephone records.
    UNASSIGNED: Campylobacteriosis outbreak in Askøy municipality, Norway in 2019. Over 2000 individuals were infected.
    UNASSIGNED: Patients in contact with GPs and the OOH service during the outbreak and a control period.
    UNASSIGNED: Patient contacts with GPs and the OOH service during the outbreak and a control period.
    UNASSIGNED: There was a 36% increase in contacts during the outbreak compared to the control period (4798 vs. 3528), with the OOH service handling 78% of outbreak-related contacts. Telephone advice was the dominant method for managing the increase in contacts to primary care, both in OOH services and daytime general practice (OR 3.73 CI: [3.24-4.28]). Children aged 0-4 years had increased use of primary care during the outbreak (OR 1.51 CI: [1.28-1.78]). GPs referred 25% and OOH services referred 75% of 70 hospitalized cases.
    UNASSIGNED: The OOH service handled most of the patients during the outbreak, with support from daytime general practice. The outbreak caused a shift towards telephone advice as a means of providing care. Young children significantly increased their use of primary care during the outbreak.
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  • 文章类型: Journal Article
    弯曲杆菌属。是革兰氏阴性杆菌,其在世界范围内被广泛认为是细菌性胃肠炎的主要原因。弯曲杆菌病是由这种病原体引起的疾病。最近,越来越多的关注弯曲杆菌病在不同动物中的流行,包括宠物。这些动物被认为是这种人畜共患病的重要水库。在黎巴嫩,弯曲杆菌感染的发生率很高。我们在黎巴嫩进行的首次试点研究旨在估计家犬中弯曲杆菌的粪便患病率。
    从不同年龄的雄性和雌性家犬中收集了35个直肠拭子,有或没有腹泻。从狗获得的样品在细菌DNA提取后通过聚合酶链反应测定进行定性微生物培养测试和分子诊断。
    弯曲杆菌属的粪便患病率。在这项研究中,室内犬只占17%。年轻女性的患病率相对较高,健康犬和腹泻犬之间存在显着差异。
    在黎巴嫩的家犬中发现弯曲杆菌病很普遍,使它们成为弯曲杆菌的潜在携带者。
    UNASSIGNED: Campylobacter spp. are Gram-negative bacilli that are widely recognized as a primary cause of bacterial gastroenteritis worldwide. Campylobacteriosis is the disease caused by this pathogen. Recently, greater attention has been given to the prevalence of campylobacteriosis in different animals, including pets. These animals are considered to be significant reservoirs for this zoonosis. In Lebanon, the occurrence of Campylobacter infection is high. Our first-of-its-kind pilot study in Lebanon aimed to estimate the fecal prevalence of Campylobacter species in house dogs.
    UNASSIGNED: Thirty-five rectal swabs were collected from male and female house dogs of different ages, both with or without diarrhea. Samples obtained from the dogs were subjected to qualitative microbiological culture testing and molecular diagnosis by polymerase chain reaction assays after bacterial DNA extraction.
    UNASSIGNED: Fecal prevalence of Campylobacter spp. in house dogs in this study was 17%. There was a relatively higher prevalence among young females and a significant difference between healthy dogs and those suffering from diarrhea.
    UNASSIGNED: Campylobacteriosis was found to be prevalent among house dogs in Lebanon, making them potential carriers of Campylobacter species.
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  • 文章类型: Randomized Controlled Trial
    背景:志贺氏菌/EIEC的早期儿童肠道感染,肠聚集性大肠杆菌(EAEC),弯曲杆菌,贾第鞭毛虫与儿童生长减少有关,然而,最近一项减少这些感染的抗菌治疗的随机试验并未改善生长结局.为了询问这个差异,我们从这项研究中测量了肠道感染。
    方法:我们利用早期生命干预措施促进坦桑尼亚儿童生长发育(ELICIT)试验,一项阿奇霉素和硝唑尼特抗菌治疗的随机双盲安慰剂对照试验每季度向6~15月龄婴儿提供.我们使用定量PCR在整个研究的时间点测试了5,479个粪便样品中的34种肠病原体。
    结果:粪便中有大量携带肠病原体。阿奇霉素给药导致空肠弯曲杆菌/大肠杆菌减少,肠聚集性大肠杆菌,治疗后2周,志贺氏菌/EIEC(绝对风险差异为-0.06至0.24),但3个月后没有效果。硝唑尼特给药后贾第鞭毛虫没有差异(12个月给药后ARR0.03)。在检查阿奇霉素与安慰剂对治疗时感染特定病原体的儿童亚组的影响时,仅在空肠弯曲杆菌/大肠杆菌感染的患者中观察到年龄Z评分的体重略有增加(0.10Z评分,95%CI-0.01-0.20;年龄Z评分0.07,95%CI-0.06-0.20)。
    结论:每季度阿奇霉素加或减硝唑尼特的抗菌干预仅导致志贺氏菌/EIEC肠道感染的短暂减少,肠聚集性大肠杆菌(EAEC),弯曲杆菌,还有贾第虫.每季度接受阿奇霉素治疗的弯曲杆菌感染儿童有改善生长的趋势。
    BACKGROUND: Early childhood enteric infection with Shigella/EIEC, enteroaggregative E. coli (EAEC), Campylobacter, and Giardia has been associated with reduced child growth, yet a recent randomized trial of antimicrobial therapy to reduce these infections did not improve growth outcomes. To interrogate this discrepancy, we measured the enteric infections from this study.
    METHODS: We leveraged the Early Life Interventions for Childhood Growth and Development in Tanzania (ELICIT) trial, a randomized double-blind placebo-controlled trial of antimicrobial therapy with azithromycin and nitazoxanide provided quarterly to infants from 6 to 15 months of age. We tested 5,479 stool samples at time points across the study for 34 enteropathogens using quantitative PCR.
    RESULTS: There was substantial carriage of enteropathogens in stool. Azithromycin administration led to reductions in Campylobacter jejuni/coli, enteroaggregative E. coli, and Shigella/EIEC (absolute risk difference ranged from -0.06 to 0.24) 2 weeks after treatment however there was no effect after 3 months. There was no difference in Giardia after nitazoxanide administration (ARR 0.03 at the 12 month administration). When examining the effect of azithromycin versus placebo on the subset of children infected with specific pathogens at the time of treatment, a small increase in weight-for-age Z score was seen only in those infected with Campylobacter jejuni/coli (0.10 Z score, 95% CI -0.01-0.20; length-for-age Z score 0.07, 95% CI -0.06-0.20).
    CONCLUSIONS: The antimicrobial intervention of quarterly azithromycin plus or minus nitazoxanide led to only transient decreases in enteric infections with Shigella/EIEC, enteroaggregative E. coli (EAEC), Campylobacter, and Giardia. There was a trend towards improved growth in children infected with Campylobacter that received quarterly azithromycin.
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  • 文章类型: Journal Article
    目的:这项研究很重要,因为它显示了与使用培养作为实验室鉴定人类弯曲杆菌病的主要诊断方法相关的潜在流行病学沉默。此外,我们展示了聚合酶链反应方法如何与常规疾病监测报告的人类弯曲杆菌病发作次数系统性增加相关.这些发现与操作相关,并具有公共卫生意义,因为它们表明了考虑诊断方法变化的重要性。例如,在对历史数据的流行病学分析和根据过去对未来数据的解释中。我们还认为,这项研究强调了微生物学和流行病学之间的协同作用对于疾病监测至关重要。
    OBJECTIVE: This study is important because it shows the potential epidemiological silence associated with the use of culture as the primary diagnostic method for the laboratory identification of human campylobacteriosis. Also, we show how polymerase chain reaction methods are associated with a systematic increase in the number of human campylobacteriosis episodes as reported by routine disease surveillance. These findings are operationally relevant and have public health implications because they tell how crucial it is to consider changes in diagnostic methods, e.g., in the epidemiological analysis of historical data and in the interpretation of future data in light of the past. We also believe that this study highlights how the synergy between microbiology and epidemiology is essential for disease surveillance.
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  • 文章类型: Journal Article
    目的:我们旨在探讨弯曲菌菌血症的临床特点和趋势,死亡的危险因素,和来自临床样本的抗菌药物敏感性模式。
    方法:这项回顾性队列研究纳入了2010年1月至2021年6月7家医院证实患有弯曲杆菌菌血症的患者。人口统计数据和基本历史,临床表现,收集和分析抗菌药物敏感性模式。从公共数据库中提取弯曲杆菌肠炎的年度病例。
    结果:共纳入108例患者,5个物种被隔离。空肠弯曲菌占54例(50.0%),17例(16%)患者除发烧外没有其他症状。14例(13.0%)患者发生院内死亡。与非空肠杆菌菌血症相比,空肠杆菌菌血症的死亡率较低。空肠菌血症.基础癌症和感染性休克是与住院死亡率相关的重要因素。喹诺酮耐药率很高(59%),而只有4%的分离株表现出大环内酯耐药性。弯曲杆菌肠炎的病例有显著增加,这与弯曲杆菌菌血症病例数密切相关(皮尔逊系数:0.953;p<0.0001)。
    结论:弯曲杆菌菌血症和抗生素耐药模式的发病率显著增加可能对治疗提出挑战,许多部门需要国家监测和网络的集体努力。
    OBJECTIVE: We aimed to explore the clinical characteristics of Campylobacter bacteraemia and identify the trends, risk factors for mortality, and antimicrobial susceptibility patterns from clinical samples.
    METHODS: This retrospective cohort study included patients confirmed to have Campylobacter bacteraemia from seven hospitals between January 2010 and June 2021. Data on demographics and underlying history, clinical manifestation, and antimicrobial susceptibility patterns were collected and analyzed. Annual cases of Campylobacter enteritis were extracted from a public database.
    RESULTS: A total of 108 patients were included, and five species were isolated. Campylobacter jejuni accounted for 54 (50.0%) cases and 17 (16%) patients had no symptoms other than fever. In-hospital mortality occurred in 14 (13.0%) patients. C. jejuni bacteraemia was associated with lower mortality compared to non-C. jejuni bacteraemia. Underlying cancer and septic shock were the significant factors associated with in-hospital mortality. Quinolone resistance was high (59%), whereas only 4% of isolates exhibited macrolide resistance. There has been a significant increase in the number of Campylobacter enteritis cases, which was strongly correlated with the number of Campylobacter bacteraemia cases (Pearson\'s coefficient: 0.953; p < 0.0001).
    CONCLUSIONS: The notably increasing incidence of Campylobacter bacteraemia and antibiotic resistance patterns can challenge the treatment, necessitating collective efforts of national surveillance and networks by many departments.
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  • 文章类型: Journal Article
    抗菌素耐药性(AMR)是由过度使用导致的一个关键的全球问题,误用,和/或对人类使用抗生素不足,动物\'农业,以及受污染的环境。这项研究是中东地区首次进行的一项健康调查,该调查结合了全基因组测序(WGS)来检查AMR在弯曲杆菌属中的传播。和沙门氏菌。进行这项横断面研究是为了检查AMR在人-动物-环境界面的作用,并在西岸中部的拉马拉/比雷赫省和耶路撒冷省进行,巴勒斯坦。在2021年和2022年,共收集和分析了592个样本。共有65种空肠弯曲杆菌和19种沙门氏菌。隔离物,使用牛津纳米孔技术MinION平台提取用于WGS的DNA。我们发现鸡粪中存在空肠弯曲菌和肠沙门氏菌的优势血清型,市场上出售的鸡肉,和无症状的农场工人的粪便,无论来源如何,分离株之间的遗传相似性都很高。此外,我们的结果显示,在2021年至2022年间,来自相同地点的空肠弯曲菌的菌株快速周转。大多数阳性沙门氏菌。样品是多药耐药(MDR)肠球菌血清型Muenchen,携带新生婴儿链球菌(pESI)大质粒的质粒,赋予多种抗生素耐药性。我们的发现强调了MDR食源性病原体通过食物链从动物传播到人类,强调“一个健康”方法的重要性,该方法考虑了人与人之间的相互联系,动物,和环境健康。重要性在这项研究之前,在中东国家,几乎没有关于沙门氏菌病和弯曲杆菌病以及相关AMR的人-动物-环境综合研究。现有的少数研究缺乏强大的流行病学研究设计,适用于一种健康方法,并且没有使用WGS来确定循环血清型及其AMR谱。由于公共卫生和粮食安全服务的崩溃,中东国家的内乱和战争推动了AMR。这项研究同时对人类进行采样,动物,和环境,利用WGS对巴勒斯坦肉鸡生产链中的食源性致病菌进行全面调查。我们表明,在养鸡场的样本中可以发现相同的空肠弯曲杆菌和肠球菌血清型。市场上出售的鸡肉,和无症状肉鸡生产工人。最显着的特征是在同一采样位置检测到的物种的遗传谱变化迅速。大多数阳性沙门氏菌。样品是携带pESI大质粒的MDR肠溶菌分离株。结果表明,在我们的样本中发现的肠沙门氏菌分离株与占所有临床沙门氏菌40%的分离株之间存在密切的关系。如前所述,在以色列的分离株,序列同一性超过99.9%。这些发现表明MDRS.enterica血清型Muenchen菌株通过食物链从动物到人类的跨界传播。该研究强调了将OneHealth综合研究与WGS相结合的重要性,以检测无法检测到的食源性病原体的环境-动物-人类传播。这项研究展示了环境-动物-人类综合采样和WGS监测AMR的好处。环境样本,在受冲突蹂躏的地方,监测系统有限,法规薄弱,可以提供有效的AMR监控解决方案。细菌分离物的WGS提供了细菌血清型和AMR在复杂的社会生态系统中的分布和传播的因果推断。因此,我们的研究结果指出,通过公共和动物卫生和食品安全当局的更紧密合作,实施“一个健康”方法的预期好处。
    Antimicrobial resistance (AMR) is a critical global concern driven by the overuse, misuse, and/or usage of inadequate antibiotics on humans, animals\' agriculture, and as a result of contaminated environments. This study is the first One Health survey in the Middle East that incorporated whole-genome sequencing (WGS) to examine the spread of AMR in Campylobacter spp. and Salmonella spp. This cross-sectional study was conducted to examine the role of AMR at the human-animal-environmental interface and was performed in Ramallah/Al-Bireh and Jerusalem governorates of the central West Bank, Palestine. In 2021 and 2022, a total of 592 samples were collected and analyzed. From a total of 65 Campylobacter jejuni and 19 Salmonella spp. isolates, DNA was extracted for WGS using Oxford Nanopore Technologies MinION platform. We found that the dominant serotypes of C. jejuni and Salmonella enterica were present in chicken manure, chicken meat sold in markets, and feces of asymptomatic farm workers, with high genetic similarities between the isolates regardless of origin. Additionally, our results showed rapid strain turnover in C. jejuni from the same sites between 2021 and 2022. Most of the positive Salmonella spp. samples were multidrug-resistant (MDR) S. enterica serovar Muenchen carrying the plasmid of emerging S. infantis (pESI) megaplasmid, conferring resistance to multiple antibiotics. Our findings highlight the spread of MDR foodborne pathogens from animals to humans through the food chain, emphasizing the importance of a One Health approach that considers the interconnections between human, animal, and environmental health. IMPORTANCE Prior to this study, there existed hardly an integrated human-animal-environmental study of Salmonellosis and Campylobacteriosis and related AMR in Middle Eastern countries. The few existing studies lack robust epidemiological study designs, adequate for a One Health approach, and did not use WGS to determine the circulating serotypes and their AMR profiles. Civil unrest and war in Middle Eastern countries drive AMR because of the breakdown of public health and food security services. This study samples simultaneously humans, animals, and the environment to comprehensively investigate foodborne pathogens in the broiler chicken production chain in Palestine using WGS. We show that identical serotypes of C. jejuni and S. enterica can be found in samples from chicken farms, chicken meat sold in markets, and asymptomatic broiler chicken production workers. The most striking feature is the rapid dynamic of change in the genetic profile of the detected species in the same sampling locations. The majority of positive Salmonella spp. samples are MDR S. enterica serovar Muenchen isolates carrying the pESI megaplasmid. The results demonstrate a close relationship between the S. enterica serovar Muenchen isolates found in our sample collection and those responsible for 40% of all clinical Salmonella spp. isolates in Israel as previously reported, with a sequence identity of over 99.9%. These findings suggest the transboundary spread of MDR S. enterica serovar Muenchen strains from animals to humans through the food chain. The study underscores the importance of combining integrated One Health studies with WGS for detecting environmental-animal-human transmission of foodborne pathogens that could not be detected otherwise. This study showcases the benefits of integrated environmental-animal-human sampling and WGS for monitoring AMR. Environmental samples, which may be more accessible in conflict-torn places where monitoring systems are limited and regulations are weak, can provide an effective AMR surveillance solution. WGS of bacterial isolates provides causal inference of the distribution and spread of bacterial serotypes and AMR in complex social-ecological systems. Consequently, our results point toward the expected benefits of operationalizing a One Health approach through closer cooperation of public and animal health and food safety authorities.
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