Biology

Biology
  • 文章类型: Journal Article
    由于不断的变化和生物多样性的下降,今天的科学应该依靠长期的基于物种的生态研究。我们对水甲虫科进行了长期的生态动力学研究,which,尽管它在底栖群落中非常丰富,仍然缺乏研究。这项研究的主要目的是调查人口方面(组成,多样性,性别比例)和生态方面(出现模式,PlitviceLakesNP15年以上的Scirtidae家族的季节性动态和对环境因素的偏好,克罗地亚。该研究在三个地点和五种不同的底物类型中进行。在研究区域中总共记录了三个具有不同分布的分类单元:在凝灰岩屏障和Elodessp。在春季地区。在春季和初夏,性别比对男性有利,而在秋末,它转向了对女性的青睐。家庭的丰富和出现主要取决于环境参数,这些参数在15年内表现出最大的波动:水温,水排放和氧饱和度。我们的结果清楚地表明,Scirtidae可以用作河流分区和栖息地质量的指标。根据本研究的方法和结果,我们得出结论,应在东南欧喀斯特淡水栖息地的未来监测和保护措施中使用Scirtidae。
    Due to ongoing changes and a decline in biodiversity, science today should rely on long-term species-based ecological studies. We have conducted a long-term ecological dynamics study on the water beetle family Scirtidae, which, although it is very abundant in benthic communities, is still poorly studied. The main objective of this study was to investigate the population aspects (composition, diversity, sex ratio) and ecological aspects (emergence patterns, seasonal dynamics and preferences for environmental factors) of the family Scirtidae over 15 years in Plitvice Lakes NP, Croatia. The study was conducted at three sites and in five different substrate types. A total of three taxa with different distributions were recorded in the study area: Hydrocyphon novaki and H. deflexicollis on the tufa barriers and the Elodes sp. in the spring area. The sex ratio was in favour of males in spring and early summer, while it shifted in favour of females towards the end of autumn. The abundance and emergence of the family were primarily determined by the environmental parameters which showed the greatest fluctuations over a period of 15 years: water temperature, water discharge and oxygen saturation. Our results clearly show that Scirtidae can be used as indicators of stream zonation and habitat quality. Based on the methodology and the results of this study, we conclude that Scirtidae should be used in future monitoring and protection measures in karst freshwater habitats in southeastern Europe.
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  • 文章类型: Journal Article
    背景:下一代测序(NGS)技术的不断发展导致了大规模基因组数据的产生。虽然基因组数据整合和分析的工具变得越来越可用,在许多生物学背景下,概念和分析的复杂性仍然是一个巨大的挑战。
    结果:要解决此问题,我们描述了基因组数据集成最佳实践的六步教程,包括(1)设计数据矩阵;(2)针对数据描述制定特定的生物学问题,选择和预测;(3)选择适合目标问题的工具;(4)对数据进行预处理;(5)进行初步分析,最后(6)执行基因组数据集成。
    结论:本教程已在杨树(PopulusL.)产生的公开基因组数据上进行了测试和演示,木本植物模型.我们还为无监督多块分析开发了一种新的图形输出,cimDiablo_v2,可在https://forgemia获得。inra.fr/umr-gdec/omics-整合在杨树上,并允许在基因组数据变异和相互作用中选择主驱动因素。
    BACKGROUND: The ongoing evolution of the Next Generation Sequencing (NGS) technologies has led to the production of genomic data on a massive scale. While tools for genomic data integration and analysis are becoming increasingly available, the conceptual and analytical complexities still represent a great challenge in many biological contexts.
    RESULTS: To address this issue, we describe a six-steps tutorial for the best practices in genomic data integration, consisting of (1) designing a data matrix; (2) formulating a specific biological question toward data description, selection and prediction; (3) selecting a tool adapted to the targeted questions; (4) preprocessing of the data; (5) conducting preliminary analysis, and finally (6) executing genomic data integration.
    CONCLUSIONS: The tutorial has been tested and demonstrated on publicly available genomic data generated from poplar (Populus L.), a woody plant model. We also developed a new graphical output for the unsupervised multi-block analysis, cimDiablo_v2, available at https://forgemia.inra.fr/umr-gdec/omics-integration-on-poplar , and allowing the selection of master drivers in genomic data variation and interplay.
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  • 文章类型: Journal Article
    虽然不常见,爱泼斯坦-巴尔病毒相关的神经系统疾病是成人感染性脑炎的第七大常见原因。关于EBV脑炎的出版物数量有限,主要记录了孤立的临床病例。本研究旨在总结有关EBV脑炎的已发表数据。系统的文献检索确定了97例EBV脑炎病例。在选定的案例中,EBV相关的神经系统疾病表现为脑脊液(CSF)中的淋巴细胞性细胞增多,并伴有中度高蛋白性。87%的脑脊液样本EBVPCR检测呈阳性,具有广泛的病毒载量。当脑炎发生在过去的EBV感染的背景下,所有CSF样本的EBVPCR检测均为阳性.相反,CSF样本的EBVPCR检测阴性仅发生在原发感染的情况下.很少对血液样本进行EBVPCR,对诊断贡献最小。对于EBV脑炎的治疗,29%的病例单独使用阿昔洛韦,在40%的病例中与其他药物有关。更昔洛韦(30%),皮质激素(52%),免疫球蛋白(15%)主要与其他药物联合使用。69%的病例脑影像学异常,主要在小脑和基底神经节。这项工作突出表明,对CSF样本进行EBVPCR测试是目前诊断EBV脑炎的主要实验室诊断测试。这个诊断测试是有用的;然而,它是不完美的。新的补充诊断工具,批准的治疗,和标准化的实践可以改善患者管理。
    Although uncommon, Epstein-Barr virus-related neurological disorders represent the seventh most frequent cause of infectious encephalitis in adults. The limited number of publications on EBV encephalitis mainly document isolated clinical cases. This study aimed to summarize published data on EBV encephalitis. A systematic literature search identified 97 EBV encephalitis cases. In the selected cases, EBV-related neurological disorders manifested as lymphocytic pleocytosis in the cerebrospinal fluid (CSF) with moderate hyperproteinorachia. The EBV PCR test was positive in 87% of the CSF samples, with wide-ranging viral loads. When encephalitis occurred in the context of past EBV infections, all of the EBV PCR tests on CSF samples were positive. On the contrary, negative EBV PCR tests on CSF samples occurred only in the context of primary infections. EBV PCR was rarely carried out on blood samples, contributing minimally to the diagnosis. For the treatment of EBV encephalitis, Aciclovir was used alone in 29% of cases, and in association with other drugs in 40% of cases. Ganciclovir (30%), corticoids (52%), and immunoglobulins (15%) were mainly used in association with other drugs. Cerebral imaging was abnormal in 69% of cases, mostly in the cerebellum and basal ganglia. This work highlights that the EBV PCR test on CSF samples is currently the main laboratory diagnostic test to diagnose EBV encephalitis. This diagnostic test is useful; however, it is imperfect. New complementary diagnostic tools, approved treatments, and standardized practices could improve patient management.
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  • 文章类型: News
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  • 文章类型: Journal Article
    生产,提取,净化,和稳定完整的膜蛋白是成功的结构生物学研究的关键步骤,特别是X射线晶体学或单粒子显微镜。这里,我们提出了从铜绿假单胞菌中纯化CntI的方案,药物代谢转运蛋白(DMT)家族的一个新的金属矿出口国参与假嘌呤分泌。在CntI纯化之后,我们优化了缓冲液的pH值,盐,和添加剂的差示扫描荧光分析(DSF),也称为热荧光测定(TFA)或荧光热稳定性测定(FTSA),使用染料1-苯胺萘-8-磺酸(ANS),与洗涤剂相容的荧光分子。缓冲区优化后,纯化的CntI通过尺寸排阻色谱法与多角度激光散射(SEC-MALLS)进行分析,UV吸光度,和折射率检测器,为了确定蛋白质-洗涤剂复合物的绝对摩尔质量,与蛋白质结合的洗涤剂量和无蛋白质洗涤剂胶束的量。总之,这些生物物理技术提供了有关纯化膜蛋白是否适合进一步生物物理或结构研究的初步和强制性信息。
    Production, extraction, purification, and stabilization of integral membrane proteins are key steps for successful structural biology studies, in particular for X-ray crystallography or single particle microscopy. Here, we present the purification protocol of CntI from Pseudomonas aeruginosa, a new metallophore exporter of the Drug Metabolite Transporter (DMT) family involved in pseudopaline secretion. Subsequent to CntI purification, we optimized the buffer pH, salts, and additives by differential scanning fluorimetry (DSF), also known as Thermofluor Assay (TFA) or fluorescent thermal stability assay (FTSA), with the use of dye 1-AnilinoNaphthalene-8-Sulfonic acid (ANS), a fluorescent molecule compatible with detergents. After the buffer optimization, the purified CntI was analyzed by Size Exclusion Chromatography coupled with Multi-Angle Laser Light Scattering (SEC-MALLS), UV absorbance, and Refractive Index detectors, in order to determine the absolute molar mass of the protein-detergent complex, the detergent amount bound to the protein and the amount of protein-free detergent micelles. Altogether, these biophysical techniques give preliminary and mandatory information about the suitability of the purified membrane protein for further biophysical or structural investigations.
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  • 文章类型: Journal Article
    在我们日益多样化的社会中,检查生物学和免疫学等科学领域中使用的语言很重要。性别中立的语言旨在避免基于性别的假设和排他性语言,促进包容性和多样性,这是科学研究的基本价值。
    In our increasingly diverse society, it is important to examine the language used in scientific fields such as biology and immunology. Gender-neutral language aims to avoid gender-based assumptions and exclusionary language, promoting inclusivity and diversity, which are essential values in scientific research.
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  • 文章类型: Journal Article
    提高个人进入STEM职业的速度仍然是一个国家关注的问题。STEM领域目前正面临着与合格工人一起填补工作的危机,这表明STEM工作是可用的,但仍然开放,等待合格的毕业生。尽管研究人员之前已经调查了人口统计学和流失率等变量,因为缺乏STEM毕业生来填补这些职位空缺,有一个额外的研究,以检查额外的职业相关变量的影响是至关重要的。探索以生物学为重点的职业发展课程(CDC)的影响,我们调查了277名在最后一个学期参加CDC的生物专业学生.受访者被要求描述他们对CDC中包含的专业发展模块的看法,并描述如果CDC在其学术生涯早期可用,他们会做什么不同。我们将数据分析扎根于科学和生物学身份框架中。与早期的身份研究一致,我们发现与CDC的参与增强了学生在生物学方面的表现/能力和作为生物学家的认可,两个因素对身份形成很重要。此外,我们表明,学生们更喜欢在他们的学术生涯早期有CDC。总的来说,我们的数据以两种新颖的方式促进了我们对生物学专业学生职业发展的理解。首先,我们提供了急需的定性数据,突出了以生物学为重点的CDC的潜在机制.第二,我们提供的定量和定性数据都集中在疾病预防控制中心的时间,在生物学中尚未被有意探讨的话题。
    Improving the rate at which individuals enter into STEM careers remains a national concern. STEM fields are currently facing a crisis with respect to filling jobs with qualified workers, suggesting that STEM jobs are available yet remain open and waiting for qualified graduates. Although researchers have previously investigated variables such as demographics and attrition rates for the lack of STEM graduates available to fill these job vacancies, there is a critical need for additional research examining the impact of additional career-related variables. To explore the impact of a biology-focused career development course (CDC), we surveyed 277 biology majors in their final semester who participated in the CDC. Respondents were asked to describe their perceptions of the professional development modules contained within the CDC and to describe what they would have done differently had the CDC been available earlier in their academic career. We grounded data analysis in science and biology identity frameworks. In agreement with earlier identity studies, we found that engagement with the CDC enhanced student\'s performance/competence in biology and recognition as a biologist, two factors that are important for identity formation. Additionally, we show that students prefer to have the CDC earlier in their academic careers. Collectively, our data advance our understanding of career development of biology majors in two novel ways. First, we provide much needed qualitative data highlighting the mechanisms underlying the biology-focused CDC. Second, we provide both quantitative and qualitative data focused on the timing of the CDC, a topic which has not yet been purposely explored in biology.
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  • 文章类型: Journal Article
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  • 文章类型: English Abstract
    近年来,在国家政策和社会就业需求的支持下,生物专业的人才一直在快速增长。在高等教育“双世界一流”的背景下,为社会培养高素质的生物学人才,本研究分析了湖州学院生物专业本科生对就业的看法以及他们对生物专业的专业认可度。本研究旨在为生物类专业本科生提出高质量就业驱动的人才培养模式,为其他相关专业人才培养模式改革提供参考。
    In recent years, driven by the support of national policies and societal needs for employments, talents in biology majors have been growing rapidly. To foster high-calibre biology talents for the society in the context of the \"double world-class initiative\" in higher education, this study analyzed the opinion of biology undergraduates in Huzhou University on employment and their professional recognition of biology majors. The aim of this study was to propose a high-quality employments-driven talent training mode for undergraduates in biology majors, so as to serve as a reference for the reform in training modes of other relevant majors.
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    文章类型: Case Reports
    We report the clinical case of a patient, 36 years old, presenting a major depressive disorder for more than 6 months. Somatic complaints (diarrhea and eczema) are also present. Thanks to a biological assessment, the diagnosis of celiac disease will be made and a strict gluten-free diet will be prescribed to the patient. This will allow the improvement of depressive symptoms and somatic complaints. This clinical case underlines the importance of the search for somatic causes in the development of a depressive symptomatology.
    Nous rapportons le cas clinique d’une patiente, âgée de 36 ans, présentant un trouble dépressif majeur depuis plus de 6 mois. Des plaintes somatiques (diarrhée et eczéma) sont également présentes. Grâce à un bilan biologique, le diagnostic de maladie cœliaque sera posé et un régime strict sans gluten sera prescrit à la patiente. Celui-ci permettra l’amélioration de la symptomatologie dépressive et des plaintes somatiques. Ce cas clinique illustre l’importance de la recherche de causes somatiques dans la mise au point d’une symptomatologie dépressive.
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