Biofilms

生物膜
  • 文章类型: Case Reports
    特发性牙龈纤维瘤病(IGF),一种病因不明的罕见纤维增生性疾病,影响牙龈组织,并对患者产生重大不利影响。因此,IGF的发病机制需要更广泛和深入的研究。在这种情况下,一名确诊为IGF的患者接受了初始非手术牙周治疗和牙龈切除术,预后良好。患者没有牙周附着丧失,但在纤维肿大之前有牙龈肿胀和出血的病史,这促使进一步调查。我们探索了患者的龈下微生物组,发现了大量的牙周病原体。牙龈组织活检显示丰富的纤维组织含有多个炎症细胞浸润。这些结果表明,继发于牙周病原体的牙龈炎症可能有助于IGF的发作。
    Idiopathic gingival fibromatosis (IGF), a rare fibroproliferative disease of unknown etiology, affects gingival tissue and has substantial adverse effects on patients. Therefore, the pathogenesis of IGF requires more extensive and in-depth research. In this case, a patient with confirmed IGF underwent initial nonsurgical periodontal therapy and gingivectomy, and the prognosis was good. The patient had no loss of periodontal attachment but had a history of swelling and bleeding of the gingiva prior to fibrous enlargement, which prompted further investigation. We explored the patient\'s subgingival microbiome and found a high abundance of periodontal pathogens. Gingival tissue biopsy revealed abundant fibrous tissue containing multiple inflammatory cell infiltrates. These results suggest that gingival inflammation secondary to periodontal pathogens can contribute to IGF onset.
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  • 文章类型: Case Reports
    生物方法和混凝经常用于减少处理陶瓷废水的化学需氧量(COD)。称为移动床生物膜反应器(MBBR)的技术可以实现这一目标。Further,使用生物表面活性剂的乳化辅助创新MBBR的工艺可用于陶瓷废水处理。在逐步升级方案中,生物表面活性剂和嗜盐和耐盐微生物培养物的聚生体用于处理废水。在21天的过程中,COD逐渐降低高达95.79%。在接下来的48小时内,生化需氧量(BOD)降低了98.3%,而总悬浮固体(TSS)下降了79.41%。通过使用这种创新的MBBR技术,生物膜形成加速,降低COD,BOD,和TSS水平。这使得处理过的水可以用于进一步的研究,将其回收回陶瓷行业,并将其重新用于农业目的。实践要点:实施改良的MBBR技术处理废水。生物表面活性剂可以减少有机和无机负荷。观察到MLSS值随着COD去除而增加。不使用化学凝结剂的工厂操作对生物表面活性剂有效。刮除载体上的生物膜形成,并确认表面活性素和鼠李糖脂的存在。
    Biological approaches and coagulation are frequently used to reduce the chemical oxygen demand (COD) for treatment of ceramic effluent water. The technology known as the moving bed biofilm reactor (MBBR) can accomplish this goal. Further, the process of emulsification-aided innovative MBBR using biosurfactants can be proposed for ceramic effluent treatment. In a step-by-step upgrading scheme, biosurfactants and a consortia of halophilic and halotolerant microbial culture was utilized for the treatment of the effluent water. Over the course of 21 days, a progressive decrease in COD of up to 95.79% was achieved. Over the next 48 h period, the biochemical oxygen demand (BOD) was reduced by 98.3%, while total suspended solids (TSS) decreased by 79.41%. With the use of this innovative MBBR technology, biofilm formation accelerated, lowering the COD, BOD, and TSS levels. This allows treated water to be used for further research on recycling it back into the ceramics sector and repurposing it for agricultural purposes. PRACTITIONER POINTS: Implementation of modified MBBR technology for the treatment of effluent water. Biosurfactants could reduce in the organic and inorganic loads. Increase in MLSS values with COD removal observed. The plant operations without the use of chemical coagulants was effective with biosurfactants. Biofilm formation on carriers was scraped and the presence of surfactin and rhamnolipid was confirmed.
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  • 文章类型: Journal Article
    电化学活性细菌(EAB)在太空探索和生命支持系统中具有广阔的前景。然而,空间环境对EAB的影响尚不清楚。在这项研究中,说明了模拟微重力对当前一代混合培养EAB的影响,并阐明了潜在的机制。结果表明,混合培养EAB的电化学活性得到增强,这主要是由于Geobacter的富集和EAB生物量的增加。此外,在模拟微重力条件下,生物膜的基因和蛋白质发生了明显的变化,包括:I)与信号传递相关的基因,II)与细胞壁合成相关的基因,和III)与核黄素合成相关的基因。这项研究首次揭示了EAB丰度的富集,EAB生物量的增加,以及在模拟微重力下促进电流产生。
    Electrochemically active bacteria (EAB) exhibit promising prospects for space exploration and life support systems. However, the effects of the space environment on EAB are unclear. In this study, the effects of simulated microgravity on the current generation of mixed-culture EAB were illustrated, and the underlying mechanism was elucidated. The results demonstrated that the electrochemical activity of mixed-culture EAB was enhanced, which was mainly due to the enrichment of Geobacter and the increase in EAB biomass. Additionally, the genes and proteins of the biofilm changed obviously under simulated microgravity conditions, including: I) genes related to signal transfer, II) genes related to cell wall synthesis, and III) genes related to riboflavin synthesis. This study first revealed the enrichment in EAB abundance, the increase in EAB biomass, and the promotion of current generation under simulated microgravity.
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  • 文章类型: Journal Article
    木质部有限的细菌病原体引起一些最具破坏性的植物病害。尽管控制这些病原体的措施通常是无效的,即使在易感类群中,一些宿主可以限制细菌负荷和症状表达。实现这种抗性的机制知之甚少。特别是,目前尚不清楚血管结构的差异如何影响生物膜在宿主内的生长和扩散。为了解决这个问题,我们开发了一个新的理论框架来描述木质部血管内的生物膜行为,采用基于聚合物的建模方法。然后,我们对模型进行了参数化,以研究木质部血管直径与橄榄品种中木质部抗性的相关性。感染下所有血管的功能严重下降,液压流量减少2-3个数量级。然而,结果表明,更宽的血管充当生物膜孵化器;允许生物膜长时间发展,同时仍然通过脉管系统运输。相比之下,较薄的血管更早被阻塞,限制生物膜传播。使用血管直径分布的实验数据,我们能够确定橄榄品种Leccino的抗性机制是最宽血管的丰度相对较低,限制X.fastidiosa传播。
    Xylem-limited bacterial pathogens cause some of the most destructive plant diseases. Though imposed measures to control these pathogens are generally ineffective, even among susceptible taxa, some hosts can limit bacterial loads and symptom expression. Mechanisms by which this resistance is achieved are poorly understood. In particular, it is still unknown how differences in vascular structure may influence biofilm growth and spread within a host. To address this, we developed a novel theoretical framework to describe biofilm behaviour within xylem vessels, adopting a polymer-based modelling approach. We then parameterised the model to investigate the relevance of xylem vessel diameters on Xylella fastidiosa resistance among olive cultivars. The functionality of all vessels was severely reduced under infection, with hydraulic flow reductions of 2-3 orders of magnitude. However, results suggest wider vessels act as biofilm incubators; allowing biofilms to develop over a long time while still transporting them through the vasculature. By contrast, thinner vessels become blocked much earlier, limiting biofilm spread. Using experimental data on vessel diameter distributions, we were able to determine that a mechanism of resistance in the olive cultivar Leccino is a relatively low abundance of the widest vessels, limiting X. fastidiosa spread.
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  • 文章类型: Journal Article
    洞穴遗产经常受到旅游甚至科学活动的威胁,这可能导致不可逆转的恶化。我们提出了一种预防性保护监测协议,以保护岩石艺术的洞穴,专注于LaGarma洞穴(西班牙),拥有珍贵考古材料和旧石器时代绘画的世界遗产。这项研究通过连续的小气候和空气颗粒监测评估了洞穴对游客的适用性,生物膜分析,空气生物学监测和实验访问。我们的研究结果表明,有几个因素使洞穴适合游客使用是不可取的。人类在洞穴中的存在和过境会对环境非常稳定和脆弱的区域的温度造成累积影响,并使洞穴沉积物中的颗粒大量重新悬浮。这些环境扰动代表了严重的影响,因为它们影响了空气中颗粒的自然空气动力学控制,并决定了细菌在整个洞穴中的扩散。该监测协议为可持续洞穴管理的设计策略提供了部分证据。
    Cave heritage is often threatened by tourism or even scientific activities, which can lead to irreversible deterioration. We present a preventive conservation monitoring protocol to protect caves with rock art, focusing on La Garma Cave (Spain), a World Heritage Site with valuable archaeological materials and Palaeolithic paintings. This study assessed the suitability of the cave for tourist use through continuous microclimate and airborne particles monitoring, biofilm analysis, aerobiological monitoring and experimental visits. Our findings indicate several factors that make it inadvisable to adapt the cave for tourist use. Human presence and transit within the cave cause cumulative effects on the temperature of environmentally very stable and fragile sectors and significant resuspension of particles from the cave sediments. These environmental perturbations represent severe impacts as they affect the natural aerodynamic control of airborne particles and determine bacterial dispersal throughout the cave. This monitoring protocol provides part of the evidence to design strategies for sustainable cave management.
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  • 文章类型: Journal Article
    背景:伤口的适当护理和治疗是小时的需要,无论是感染的还是未感染的伤口。如果伤口愈合由于某种原因而延迟,它会导致严重的并发症,并进一步增加住院时间和治疗费用。在这里,我们描述了一种新型抗菌伤口敷料配方(VG111),目的是产生显示不同类型伤口的独特优势的初步数据。
    方法:本病例系列涉及不同病因患者对VG111常规伤口愈合治疗反应不佳的急性伤口或慢性伤口的治疗。13例患者包括糖尿病患者,压疮,烧伤,创伤,在所有情况下,用VG111治疗的其他患者均显示出快速的伤口愈合,甚至在发生完全皮肤再生时无需移植。
    结果:通过清除伤口感染来说明,渗出物的减少/消失,强烈造粒的外观,上皮化,和抗生物膜活性,然后完全闭合伤口。这种VG111排除了局部感染对全身抗菌药物的需要,这种单一的代理是试图解决现有产品的局限性和缺点。
    结论:尽管患者属于老年组,有糖尿病等合并症,VG111仍然显示出有效的快速伤口愈合,而且在难以治愈的情况下也没有任何疤痕形成,感染,和未感染的伤口。

    Introduction: Appropriate care and treatment of a wound is the need of the hour whether it is an infected or a non-infected wound. If wound healing is delayed for some reason, it leads to serious complications and further increases the hospital stay and cost of treatment. Herein, we describe a novel antimicrobial wound dressing formulation (VG111), with an objective to generate the preliminary data showing the distinct advantages in various types of wounds.

    Method: This case series involved the treatment of acute cases of wounds or chronic wounds that did not respond well to conventional wound healing treatments with VG111 in patients with different etiologies. Thirteen cases of patients that included patients with diabetes, pressure ulcers, burns, trauma, and others treated with VG111 showed rapid wound healing in all the cases, even obviating the need for a graft when complete skin regeneration occurred.

    Result: This was illustrated by clearing of the wound infections, reduction/disappearance of the exudate, appearance of intense granulation, epithelialization, and anti-biofilm activity followed by complete wound closure. This VG111 precludes the need for systemic antimicrobial agents in localized infections and therefore, this single agent is an attempt to address the limitations and the drawbacks of the available products.

    Conclusion: Despite patients belonging to the old age group and having comorbidities like diabetes, still VG111 showed effective rapid wound healing, and that too without any scar formation in hardto- heal, infected, and non-infected wounds.

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  • 文章类型: Journal Article
    生物膜形成保护细菌免受抗生素治疗和宿主免疫反应,使生物膜感染难以治疗。在生物膜中,细菌细胞缠绕在自身产生的细胞外基质中,所述细胞外基质通常包括胞外多糖。生物膜基质组分的分子水平描述,尤其是胞外多糖,由于其复杂的性质以及缺乏溶解度和结晶度,因此很难获得。固态核磁共振(NMR)已成为确定生物膜基质胞外多糖结构而无需降解样品制备的关键工具。在这次审查中,我们讨论了研究生物膜基质胞外多糖的挑战以及开发固态NMR方法来研究这些通常难以处理的材料的机会。我们特别强调了由机会病原体制成的称为Pel的胞外多糖的研究,铜绿假单胞菌.我们提供了确定胞外多糖结构的路线图,并讨论了使用固态NMR研究此类系统的未来机会。所讨论的用于阐明生物膜胞外多糖结构的策略应广泛适用于研究其他聚糖的结构。
    Biofilm formation protects bacteria from antibiotic treatment and host immune responses, making biofilm infections difficult to treat. Within biofilms, bacterial cells are entangled in a self-produced extracellular matrix that typically includes exopolysaccharides. Molecular-level descriptions of biofilm matrix components, especially exopolysaccharides, have been challenging to attain due to their complex nature and lack of solubility and crystallinity. Solid-state nuclear magnetic resonance (NMR) has emerged as a key tool to determine the structure of biofilm matrix exopolysaccharides without degradative sample preparation. In this review, we discuss challenges of studying biofilm matrix exopolysaccharides and opportunities to develop solid-state NMR approaches to study these generally intractable materials. We specifically highlight investigations of the exopolysaccharide called Pel made by the opportunistic pathogen, Pseudomonas aeruginosa. We provide a roadmap for determining exopolysaccharide structure and discuss future opportunities to study such systems using solid-state NMR. The strategies discussed for elucidating biofilm exopolysaccharide structure should be broadly applicable to studying the structures of other glycans.
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  • 文章类型: Journal Article
    生物膜中微生物群落变化的调查,生长在TRIGA核反应堆的安全壳壁上,在贫营养和充满重金属的环境中发现了一个繁荣的社区,定期暴露于高脉冲的电离辐射(IR)。我们观察到微生物属的垂直红外抗性/耐受性分层,更高的阻力和更少的多样性更接近反应堆核心。分离出的芽孢杆菌菌株之一在15kGy的伽马射线和质子辐射联合作用下存活,这是令人惊讶的。似乎有一系列属在新的或红外灭菌的表面上定殖或重新定殖,由芽孢杆菌和/或放线菌领导,在两周内建立了光自养和重氮营养社区。生物膜群落的时间进展也被评估为微生物对放射性污染事件的反应的代表。这表明需要更好的剂量反应模型,可以描述微生物对污染事件的反应。总的来说,TRIGA核反应堆提供了对红外微生物学的独特见解,并提供了有用的手段来研究放射性污染期间和之后的相关微生物剂量阈值。
    The investigation of the microbial community change in the biofilm, growing on the walls of a containment tank of TRIGA nuclear reactor revealed a thriving community in an oligotrophic and heavy-metal-laden environment, periodically exposed to high pulses of ionizing radiation (IR). We observed a vertical IR resistance/tolerance stratification of microbial genera, with higher resistance and less diversity closer to the reactor core. One of the isolated Bacillus strains survived 15 kGy of combined gamma and proton radiation, which was surprising. It appears that there is a succession of genera that colonizes or re-colonizes new or IR-sterilized surfaces, led by Bacilli and/or Actinobacteria, upon which a photoautotrophic and diazotrophic community is established within a fortnight. The temporal progression of the biofilm community was evaluated also as a proxy for microbial response to radiological contamination events. This indicated there is a need for better dose-response models that could describe microbial response to contamination events. Overall, TRIGA nuclear reactor offers a unique insight into IR microbiology and provides useful means to study relevant microbial dose-thresholds during and after radiological contamination.
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  • 文章类型: Case Reports
    背景:慢性细菌性前列腺炎(CBP)是由细菌感染引起的前列腺炎症。估计有8.2%的男性患有前列腺炎,最常见的是50岁以下。由于细菌生物膜的存在和病原菌菌株的抗生素耐药性上升,抗生素通常无法治疗CBP。CBP病例中经常涉及的多药耐药(MDR)细菌菌株包括超广谱β-内酰胺耐药大肠杆菌,耐万古霉素肠球菌,革兰氏阳性细菌菌株,如葡萄球菌和链球菌,肠杆菌科,如克雷伯菌和变形杆菌,还有铜绿假单胞菌.CBP患者生活质量显著恶化,对心理健康的影响与糖尿病和慢性心力衰竭患者相当,引导患者探索噬菌体疗法等替代品。病例介绍:我们介绍了诊断为CBP并表现出典型症状的患者的病例。对前列腺和精液的测试将大肠杆菌确定为病原体。尽管反复使用抗生素疗程超过5年,但患者并未获得良好的长期治疗结果。这导致他寻求噬菌体疗法来治疗他的病情。方法和结果:培养的大肠杆菌菌株针对Eliava研究所开发的噬菌体制剂进行了测试,格鲁吉亚。在Eliava噬菌体治疗中心(EPTC)将显示针对菌株的裂解活性的制剂用于患者的治疗。患者接受了两个疗程的EPTC治疗。第一个疗程导致症状明显改善,在第二个疗程的噬菌体治疗后,症状完全缓解。在治疗期间测试的样品显示细菌生长下降,与症状改善相对应。后处理培养物没有病原菌的生长。讨论:这个案例说明了噬菌体在治疗CBP中的功效,一种通常对抗生素疗法有抗性的疾病。抗生素如氧氟沙星,磷霉素,甲氧苄啶,呋喃妥因和头孢曲松分5年多疗程给药,但是每个疗程后感染都会复发。经过两个疗程的噬菌体治疗,患者经历了长期症状缓解和细菌载量显著减少。全球越来越多的此类病例需要进一步研究噬菌体治疗MDR和慢性感染的潜力。
    Background: Chronic Bacterial Prostatitis (CBP) is inflammation of the prostate caused by bacterial infection. An estimated 8.2% of men have prostatitis, most commonly under the age of 50. Antibiotics often fail to treat CBP due to presence of bacterial biofilms and rising antibiotic resistance of pathogenic bacterial strains. The multidrug resistant (MDR) bacterial strains often implicated in cases of CBP include Extended Spectrum Beta Lactam resistant Escherichia coli, Vancomycin resistant Enterococci, Gram-positive bacterial strains like Staphylococci and Streptococci, Enterobacteriaceae like Klebsiella and Proteus, and Pseudomonas aeruginosa. CBP patients experience significant deterioration in quality of life, with impact on mental health comparable with patients of diabetes mellitus and chronic heart failure, leading patients to explore alternatives like phage therapy. Case presentation: We present the case of a patient diagnosed with and exhibiting typical symptoms of CBP. Tests of the prostatic and seminal fluids identified E. coli as the causative pathogen. The patient did not experience favourable long-term treatment outcomes despite repeated antibiotic courses administered over 5 years. This led him to seek phage therapy for treatment of his condition. Methods and outcome: The cultured strain of E. coli was tested against bacteriophage preparations developed by the Eliava Institute, Georgia. Preparations showing lytic activity against the strain were used for the patient\'s treatment at the Eliava Phage Therapy Center (EPTC). The patient underwent two courses of treatment with the EPTC. The first treatment course resulted in significant symptomatic improvement, followed by complete resolution of symptoms post the second course of phage therapy. Samples tested during treatment showed declining bacterial growth, corresponding with symptomatic improvement. Post-treatment cultures had no growth of pathogenic bacteria. Discussion: This case illustrates the efficacy of bacteriophages in treating CBP, a condition that is often resistant to antibiotic therapies. Antibiotics such as ofloxacin, Fosfomycin, trimethoprim, nitrofurantoin and ceftriaxone were administered in multiple courses over 5 years, but the infection recurred after each course. After two courses of phage therapy, the patient experienced long-term symptom resolution and substantial reduction in bacterial load. Increasing numbers of such cases globally warrant further research into the potential for bacteriophages for treating MDR and chronic infections.
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  • 文章类型: Journal Article
    近年来,移动床生物膜反应器(MBBR)已经优于具有悬浮生物质的常规方法。这种偏好的主要原因是它可以实现比具有较小占地面积的常规系统更好的去除效率。然而,在现实生活中,释放大规模WWTP中MBBR的全部潜力仍然具有挑战性。在这项研究中,三种不同处理技术的性能,延长曝气活性污泥(EAAS),混合固定床生物膜反应器(HFBBR),和混合移动床生物膜反应器(HMBBR),在位于El-Gouna的污水处理厂进行了一年的调查,埃及。三个系统的COD去除效率相当,EAAS达到93.5%,HFBBR94%,HMBRR95%。然而,EAAS的NH4去除效率略低于HFBBR和HMBBR(97.5%),达到98%的去除效率。BioWin软件能够模仿El-Gouna的WWTP的真实案例,并严格定义了所有工厂限制和运营数据。对不同的模拟进行了建模,以测试三种系统在不同场景和运行条件下的水力和有机负载能力。HMBBR系统无法承受有机负荷的增加,因为生物质脱落效应以及随后在沉降器中的高TSS负荷。生物质脱落使沉降器过载,并导致废水中的生物质损失。由于HMBBR污泥的沉降性明显低于HFBBR,因此废水中的TSS损失发生得更早,以至于移动载体的应用具有不利影响,与添加介质载体的主要目的相矛盾。使用模型模拟和数据分析结果来推荐最合适的配置,以使用具有所有动力学参数和操作条件的附加生长技术来升级现有系统。推荐的配置主要集中在具有非常低的液压停留时间的隔室中的塑料介质的分离,以吸收进入的冲击载荷。
    In recent years, Moving Bed Biofilm Reactors (MBBRs) have been preferred to conventional processes with suspended biomass. The main reason for this preference is that it can achieve better removal efficiencies than conventional systems with smaller footprints. However, unlocking the full potential of MBBRs in large-scale WWTPs remains challenging in real life. In this study, the performance of three different treatment technologies, Extended Aeration Activated Sludge (EAAS), Hybrid Fixed Bed Biofilm Reactor (HFBBR), and Hybrid Moving Bed Biofilm Reactor (HMBBR), was investigated over a year in a WWTP located in El-Gouna, Egypt. The COD removal efficiencies of the three systems were comparable, with the EAAS achieving 93.5%, HFBBR 94%, and HMBRR 95%. Nevertheless, the NH4 removal efficiency of the EAAS was slightly lower (97.5%) than that of the HFBBR and the HMBBR, that achieved a removal efficiency of 98%. BioWin Software was able to mimic the real case of the WWTP of El-Gouna and critically defined all plant limitations and operational data. Different simulations were modeled to test the hydraulic and organic loading capacities of the three systems under different scenarios and operating conditions. The HMBBR system failed to withstand the increase in organic load because of the biomass sloughing effect and subsequently high TSS loads in the settlers. Biomass sloughing overloaded the settlers and lead to biomass loss in the effluent. As the settleability of the HMBBR sludge was significantly lower than for the HFBBR the TSS loss in the effluent happened that much earlier that the moving carrier application had an adverse effect contradicting with the primary purpose of adding media carriers. Model simulations and data analysis findings were used to recommend the most suitable configuration for upgrading an existing system using the attached growth technique with all kinetic parameters and operational conditions. The recommended configuration focuses mainly on the separation of plastic media in a compartment with a very low hydraulic retention time to absorb the incoming shock load.
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