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  • 文章类型: Case Reports
    小鹦鹉(P.micra),革兰氏阳性厌氧菌,表现出口腔黏膜和皮肤表面的定植倾向,可能演变成与多种疾病相关的致病实体。P.micra相关疾病的诊断轨迹遇到延误,通常会带来严重后果,包括死亡,归因于缺乏症状特异性和文化挑战。对微囊藻的诊断和治疗方法缺乏共识加剧了解决相关病症的复杂性。本研究旨在阐明和审查与P.micra相关的临床表现,从相关病例报告的广泛文献综述中汲取见解。
    一名53岁的男性因反复咯血在我院就诊。在等待病原体培养结果时开始经验性治疗;然而,病人的症状持续存在。随后的宏基因组下一代测序(mNGS)分析揭示了可归因于P.micra的肺部感染。经哌拉西林舒巴坦钠和盐酸莫西沙星治疗后症状缓解。全面的文献综述,利用PubMed数据库,在过去十年中,我们进行了评估病例报告,其中P.micra被确定为病原体。
    文献分析强调了P.micra对患有心血管疾病的免疫功能低下人群的偏爱,糖尿病,骨科条件,和肿瘤。危险因素,包括口腔和牙周卫生,吸烟,和酒精消费,被发现与P.micra感染有关。临床表现包括发热,咳嗽,痰液生产,和背部疼痛,可能导致严重的结果,如脊椎盘炎,化脓性关节炎,肺脓肿,菌血症,脓毒症,和死亡率。虽然传统的细菌培养仍然是主要的诊断工具,mNGS等新兴技术提供了替代考虑因素。在治疗方式上,β-内酰胺类抗生素和硝基咪唑占优势,回收率分别为56.10%(46/82)和23.17%(19/82),分别。本病例报告和文献综述共同旨在提高临床医生和实验室医学专业人员对P.micra相关感染复杂性的认识。
    Parvimonas micra (P. micra), a Gram-positive anaerobic bacterium, exhibits colonization tendencies on oral mucosal and skin surfaces, potentially evolving into a pathogenic entity associated with diverse diseases. The diagnostic trajectory for P. micra-related diseases encounters delays, often with severe consequences, including fatality, attributed to the absence of symptom specificity and challenges in culture. The absence of a consensus on the diagnostic and therapeutic approaches to P. micra exacerbates the complexity of addressing associated conditions. This study aims to elucidate and scrutinize the clinical manifestations linked to P. micra, drawing insights from an extensive literature review of pertinent case reports.
    A 53-year-old male sought medical attention at our institution presenting with recurrent hemoptysis. Empirical treatment was initiated while awaiting pathogen culture results; however, the patient\'s symptoms persisted. Subsequent metagenomic next-generation sequencing (mNGS) analysis revealed a pulmonary infection attributable to P. micra. Resolution of symptoms occurred following treatment with piperacillin sulbactam sodium and moxifloxacin hydrochloride. A comprehensive literature review, utilizing the PubMed database, was conducted to assess case reports over the last decade where P. micra was identified as the causative agent.
    The literature analysis underscores the predilection of P. micra for immunocompromised populations afflicted by cardiovascular diseases, diabetes, orthopedic conditions, and tumors. Risk factors, including oral and periodontal hygiene, smoking, and alcohol consumption, were found to be associated with P. micra infections. Clinical manifestations encompassed fever, cough, sputum production, and back pain, potentially leading to severe outcomes such as Spondylodiscitis, septic arthritis, lung abscess, bacteremia, sepsis, and mortality. While conventional bacterial culture remains the primary diagnostic tool, emerging technologies like mNGS offer alternative considerations. In terms of treatment modalities, β-lactam antibiotics and nitroimidazoles predominated, exhibiting recovery rates of 56.10% (46/82) and 23.17% (19/82), respectively. This case report and literature review collectively aim to enhance awareness among clinicians and laboratory medicine professionals regarding the intricacies of P. micra-associated infections.
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  • 文章类型: Review
    背景:具核梭杆菌(F.核子)属于梭杆菌属,这是一种革兰氏阴性专性厌氧细菌。与核仁F.相关的菌血症是一种严重的并发症,这在临床上并不常见,特别是与其他颅内病原微生物感染合并时。我们首次报道了1例有核F.菌血症合并颅内牙龈卟啉单胞菌(P.牙龈)和1型单纯疱疹病毒(HSV-1)感染。
    方法:一名60岁的女性因头痛入院一周,持续2天恶化。结合历史,体征和检查,以缺血性脑血管病(ICVD)为特征.通过基质辅助激光解吸/电离作用时间质谱(MALDI-TOF-MS)检测血液中的F.同时,通过宏基因组下一代测序(mNGS)鉴定脑脊液(CSF)中的牙龈卟啉单胞菌和HSV-1。在快速诊断以及抗生素和抗病毒治疗的组合后,病人康复出院。
    结论:据我们所知,这是颅内牙龈卟啉单胞菌和HSV-1感染合并有核F.菌血症的首次报道。
    BACKGROUND: Fusobacterium nucleatum (F. nucleatum) belongs to the genus Fusobacterium, which is a gram-negative obligate anaerobic bacterium. Bacteremia associated with F. nucleatum is a serious complication, which is not common in clinic, especially when it is combined with other intracranial pathogenic microorganism infection. We reported for the first time a case of F. nucleatum bacteremia combined with intracranial Porphyromonas gingivalis (P. gingivalis) and herpes simplex virus type 1(HSV-1) infection.
    METHODS: A 60-year-old woman was admitted to our hospital with a headache for a week that worsened for 2 days. Combined with history, physical signs and examination, it was characterized as ischemic cerebrovascular disease (ICVD). F. nucleatum was detected in blood by matrix-assisted laser desorption/ionization time-offight mass spectrometry (MALDI-TOF-MS). Meanwhile, P. gingivalis and HSV-1 in cerebrospinal fluid (CSF) were identified by metagenome next generation sequencing (mNGS). After a quick diagnosis and a combination of antibiotics and antiviral treatment, the patient recovered and was discharged.
    CONCLUSIONS: To our knowledge, this is the first report of intracranial P. gingivalis and HSV-1 infection combined with F. nucleatum bacteremia.
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  • 文章类型: Review
    在著名的个体之后从自然界中命名元素的做法可以追溯到远古时代。这种创建自人名衍生的地名术语的做法已被推广到原核命名法,其中,《国际原核生物命名法》(ICNP)规定了从人名创建科学名的准则。然而,这些指导方针可以被视为文化偏见,脱节,有时,误导。这里,为了使这些建议现代化,使它们更加用户友好,连贯和包容,我根据先例和关键的语言和文化原则回顾当前的实践,同时质疑名/姓范式对许多文化传统的适用性。程序性挑战包括个人姓名的罗马化(包括变音符号的处理),创造一个短而令人愉快的拉丁茎,将词干分配给变调和添加后缀或复合词成分,以创建属名或物种称谓,自定义以元音结尾的名称和词干的方法。我回顾了茎扩增的利弊,这涉及在原始词干上添加一个额外的\'i\'。接下来,我制定了一个连贯的工作流程,我将其合并到Python脚本中,以实现基于计算机的名称创建自动化。与其遵循ICNP,将讨论限制在几十个主要是欧洲名称,我研究了这些原则如何应用于科学家在PubMed数据库中发布的成千上万的姓氏,专注于传统方法失败的边缘情况,特别是非常短和非常长的名字。借鉴这些探索和分析,我建议对ICNP中目前提出的建议进行修正,以迎来现代的,一致,务实和全球包容的方法来创建原核地名。
    The practice of naming elements from the natural world after notable individuals stretches back to ancient times. This practice of creating eponyms-terms derived from personal names-has been carried forward into prokaryotic nomenclature, where the International Code of Nomenclature of Prokaryotes (ICNP) sets guidelines for creating scientific names from personal names. However, these guidelines can be seen as culturally biased, disjointed and, on occasion, misguided. Here, with the goal of modernizing these recommendations to render them more user-friendly, coherent and inclusive, I review current practice in the light of precedents and key linguistic and cultural principles, while questioning the applicability of the first-name/last-name paradigm for many cultural traditions. Procedural challenges include romanization of the personal name (including handling of diacritics), creation of a short and agreeable latinized stem, assignment of the stem to a declension and addition of suffixes or compound word components to create genus names or species epithets, customizing the approach for names and stems that end in a vowel. I review the pros and cons of stem augmentation, which involves addition of an extra \'i\' to the original stem. Next, I formulate a coherent workflow, which I incorporate into a Python script to enable computer-based automation of name creation. Rather than following the ICNP in limiting discussion to a few dozen mainly European names, I examine how these principles work out when applied to the tens of thousands of last names under which scientists publish in the PubMed database, focusing on edge cases where conventional approaches fail, particularly very short and very long names. Drawing on these explorations and analyses, I propose emendations to the advice currently presented in the ICNP to usher in a modern, consistent, pragmatic and globally inclusive approach to the creation of prokaryotic eponyms.
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  • 牙髓卟啉单胞菌是一种与牙周炎相关的口腔厌氧菌,但在其他疾病中很少检测到。仅一例由牙髓卟啉单胞菌引起的呼吸道疾病,脓性气胸,到目前为止已经有报道。由于不确定的肺部占位性病变,一名患有难治性牙周炎的53岁男子入院。通过活检对液化坏死区域和病变的固体成分进行mNGS分析后,检测到根管卟啉单胞菌和微孢子虫。因此,患者被诊断为吸入性肺脓肿,接受有效的抗菌治疗后出院。在门诊随访期间,胸部计算机断层扫描(CT)扫描显示出显着改善。在这项研究中,我们应用mNGS成功诊断了一例由罕见细菌引起的肺脓肿,提示当患者并发牙周病和临床呼吸道症状时,应考虑口腔病原体引起吸入性疾病的可能性。
    Porphyromonas endodontalis is an oral anaerobic bacterium associated with periodontitis but seldomly been detected in other diseases. Only one case of respiratory disease caused by Porphyromonas endodontalis, pyopneumothorax, has been reported so far. A 53-year-old man with refractory periodontitis was admitted due to an indeterminate lung space-occupying lesion. Following mNGS analysis of the liquefaction necrotic area and solid component of the lesion through biopsy, Porphyromonas endodontalis and Parvimonas micra were detected. Therefore, the patient was diagnosed with an aspiration lung abscess and discharged after receiving effective antibacterial treatment. The Chest computed tomography (CT) scan revealed a remarkable improvement during outpatient follow-up. In this study, we applied mNGS to diagnose a case of lung abscess attributed to an uncommon bacterium successfully, suggesting that when patients complicated with periodontal diseases and clinical respiratory symptoms, the possibility of inhalation disease caused by oral pathogens should be considered.
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  • 文章类型: Review
    背景:人型支原体是一种兼性厌氧菌,通常存在于泌尿生殖道。近年来,人分枝杆菌越来越多地与泌尿生殖道外感染有关,特别是在免疫抑制患者中。在诊断实验室中检测人源分枝杆菌可能由于其缓慢的生长速度而具有挑战性,没有细胞壁,以及专业培养基的要求和最佳生长条件。因此,有必要建立这种微生物的检测指南,并要求对免疫抑制患者进行适当的微生物检查。
    方法:我们在此介绍两例发生人型支原体感染的实体器官移植患者。支气管灌洗和胸膜液的显微镜检查未显示微生物。然而,在将样本接种到常规微生物学培养基上时,成功鉴定了该生物体,并使用16SrDNA测序进行了确认.两名患者均接受了适当的治疗,从而解决了人支原体感染。
    结论:在临床标本中迅速检测人源M.hominis可以通过早期干预并最终导致更有利的临床结果,从而对患者护理产生重大影响。尤其是移植患者。
    BACKGROUND: Mycoplasma hominis is a facultative anaerobic bacterium commonly present in the urogenital tract. In recent years, M. hominis has increasingly been associated with extra-urogenital tract infections, particularly in immunosuppressed patients. Detecting M. hominis in a diagnostic laboratory can be challenging due to its slow growth rate, absence of a cell wall, and the requirements of specialized media and conditions for optimal growth. Consequently, it is necessary to establish guidelines for the detection of this microorganism and to request the appropriate microbiological work-up of immunosuppressed patients.
    METHODS: We hereby present two cases of solid organ transplant patients who developed M. hominis infection. Microscopic examination of the bronchial lavage and pleural fluid showed no microorganisms. However, upon inoculating the specimens onto routine microbiology media, the organism was successfully identified and confirmation was performed using 16S rDNA sequencing. Both patients received appropriate treatment resulting in the resolution of M. hominis infection.
    CONCLUSIONS: The prompt detection of M. hominis in a clinical specimen can have a significant impact on patient care by allowing for early intervention and ultimately resulting in more favorable clinical outcomes, especially in transplant patients.
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  • 文章类型: Review
    无毒梭菌是革兰氏阳性厌氧孢子形成杆菌,已被鉴定为正常肠道微生物群的一部分。这种细菌很少与人类感染有关,到目前为止,只有很少的严重感染报告。在这项工作中,我们报告了四名患者的菌血症,由MALDI-TOFMS很好地鉴定。此外,对以前发表的由这种厌氧菌引起的菌血症病例进行了回顾。
    Clostridium innocuum is a Gram-positive anaerobic spore-forming bacillus that has been identified as part of the normal intestinal microbiota. This bacterium has been rarely associated with human infections, and only few severe infections have been reported until now. In this work, we report on four patients with bacteremia due to C. innocuum, which were well identified by MALDI-TOF MS. Moreover, a review of the previous published cases of bacteremia due to this anaerobic bacterium has been performed.
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  • 文章类型: Systematic Review
    牙龈卟啉单胞菌(P.牙龈)是革兰氏阴性口腔厌氧菌,在牙周炎的发病机理中起关键作用。牙龈卟啉单胞菌表达多种破坏先天和适应性免疫的毒力因子,允许牙龈卟啉单胞菌在宿主中存活和繁殖并破坏牙周组织。除了牙周病,牙龈卟啉单胞菌也与全身性疾病有关,其中胰岛素抵抗是一个重要的病理基础。牙龈卟啉单胞菌引起全身炎症反应,破坏胰岛素信号通路,诱导胰腺β细胞功能减退和数量减少,并导致胰岛素敏感性降低,导致胰岛素抵抗(IR)。在本文中,我们系统综述了牙龈卟啉单胞菌诱导胰岛素抵抗机制的研究,讨论牙龈卟啉单胞菌与基于胰岛素抵抗的全身性疾病之间的关系,最后提出相关的治疗方法。总的来说,通过对牙龈卟啉单胞菌通过胰岛素抵抗引起的全身性疾病相关机制的系统评价,我们希望为未来相关系统性疾病的基础研究和临床干预提供新的见解。
    Porphyromonas gingivalis (P. gingivalis) is a Gram-negative oral anaerobic bacterium that plays a key role in the pathogenesis of periodontitis. P. gingivalis expresses a variety of virulence factors that disrupt innate and adaptive immunity, allowing P. gingivalis to survive and multiply in the host and destroy periodontal tissue. In addition to periodontal disease, P.gingivalis is also associated with systemic diseases, of which insulin resistance is an important pathological basis. P. gingivalis causes a systemic inflammatory response, disrupts insulin signaling pathways, induces pancreatic β-cell hypofunction and reduced numbers, and causes decreased insulin sensitivity leading to insulin resistance (IR). In this paper, we systematically review the studies on the mechanism of insulin resistance induced by P. gingivalis, discuss the association between P. gingivalis and systemic diseases based on insulin resistance, and finally propose relevant therapeutic approaches. Overall, through a systematic review of the mechanisms related to systemic diseases caused by P. gingivalis through insulin resistance, we hope to provide new insights for future basic research and clinical interventions for related systemic diseases.
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  • 文章类型: Review
    拉皮雪花是革兰氏阴性的,非封装,兼性厌氧细菌,仅在少数具有不同临床表现的病例中报道,药物敏感性,和自1981年首次隔离以来的治疗。本研究旨在描述秘鲁拉帕吉氏杆菌的病例报告,并系统地回顾已记录的感染拉帕吉氏杆菌的个体的病例报告。一名59岁的男子因帕金森氏病卧床不起,患有癫痫,有1周的发烧和喉咙痛病史,因此入院。体格检查显示右半胸部呈迟钝状态,并消除了膀胱杂音。住院期间,病人被诊断患有各种感染,包括肺结核,为此他接受了广谱抗生素。在没有临床改善的情况下,进行尿液培养,显示拉皮梭菌(通过BDPhoenixM50系统检测,VernonHills,IL).患者接受阿莫西林/克拉维酸治疗后出院。2023年1月28日,还在五个数据库中搜索了拉帕吉氏杆菌的病例报告。在2006年至2022年期间,全球报告了20例拉皮梭菌,其中16例涉及成年人。发烧是最常见的表现(75%),肺炎是主要的表现形式(45%).此外,90%的患者有至少一种合并症,15%的人死亡。此外,大多数分离株对环丙沙星敏感(81%),美罗培南(62%),和阿米卡星(60%)。总的来说,C.lapagei应该在受损主机中被怀疑,尤其是肺炎患者。尽管细菌可以影响各种器官,并且抗生素敏感性模式是可变的,喹诺酮类药物,四环素,碳青霉烯类似乎是第一种治疗选择。
    Cedecea lapagei is a gram-negative, non-encapsulated, facultative anaerobic bacterium that has been reported in only a few cases with varying clinical presentations, drug susceptibility, and treatment since its first isolation in 1981. This study aimed to describe a case report of C. lapagei in Peru and systematically review the documented case reports of individuals infected with C. lapagei. A 59-year-old man who had become bedridden with Parkinson\'s disease and had epilepsy presented with a 1-week history of fever and sore throat and was admitted. Physical examination revealed an obtundation state and abolished vesicular murmur in the right hemithorax. During hospitalization, the patient was diagnosed with various infections, including tuberculosis, for which he received broad-spectrum antibiotics. In the absence of clinical improvement, a urine culture was performed showing C. lapagei (detected by BD Phoenix M50 system, Vernon Hills, IL). The patient received amoxicillin/clavulanate and was discharged. Case reports of C. lapagei were also searched in five databases on January 28, 2023. Twenty cases of C. lapagei were reported worldwide between 2006 and 2022, 16 of which involved adults. Fever was the most common manifestation (75%), and pneumonia was the primary form of presentation (45%). Moreover, 90% of the patients had at least one comorbidity, and 15% died. Also, most of the isolates were sensitive to ciprofloxacin (81%), meropenem (62%), and amikacin (60%). Overall, C. lapagei should be suspected in compromised hosts, particularly those with pneumonia. Although the bacterium can affect various organs and the antibiotic susceptibility pattern is variable, quinolones, tetracyclines, and carbapenems seem to be the first therapeutic option.
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  • 文章类型: Systematic Review
    The objective of this study was to perform a systematic review of the characteristics, causative microorganisms and outcome of brain abscesses caused by anaerobic bacteria over the past 25 years. We reviewed studies on brain abscesses which included infection due to anaerobic microorganisms published between 1998 and 2022. We excluded reports with polymicrobial infections (more than 2 anaerobic bacteria isolated) and those that do not provide enough information to make comparisons, the reports with only one case of brain abscess due to anaerobes, as well as those focused on an only anaerobic bacterium. Also, we have excluded the cases in pediatric population. We searched the scientific literature through the Cochrane Library, EMBASE and PubMed/MEDLINE databases for studies of this condition. We finally included 28 studies with 6,167 patients, of which 715 (11.5%) were cases caused by anaerobic bacteria. There was a male predominance (70%) and mean age of 40.3 years. Most infections were monomicrobial (59.4%). The most common anaerobic microorganisms isolated were Bacteroides spp (43.4%) and Gram-positive anaerobic cocci (35.1%). Cases of brain abscesses caused by anaerobic bacteria were most frequent in Asia and Europe. The source of infection most frequent was otogenic in 84.6% followed by a neurosurgery procedure infection in 23% of patients. The main symptom observed was headache in 95.6% of patients followed by fever (69.5%). Surgical treatment was performed in 48 % of patients and the percentage of patients in whom antibiotic treatment was applied range 88.8% to 100%. The main limitation of this review is the non-inclusion of studies published before of 1998 in which MALDI-TOF MS system had not been introduced in the majority of laboratories for routine identification. The patient rate with isolation of anaerobic bacteria in brain abscesses is low, but these data could be underestimated mainly due to the fastidious nature of these microorganisms and the difficulties in the identification of some anaerobes.
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  • 文章类型: Journal Article
    一种普遍的性传播感染,人乳头瘤病毒(HPV)通常是在第一次性活动后获得的。大多数HPV感染是无症状和暂时的。子宫颈,肛门,阴茎,阴道,外阴,由于高风险(hr)-HPV菌株的反复感染,一般在几十年后。HPV感染与生殖功能异常显着相关。根据最近的研究,HPV感染可能通过降低精子活力而导致男性不育。hr-HPV感染是流产的危险因素,并且不加区分的HPV基因型意外增加了早产的可能性。HPV降低了女性子宫内膜滋养细胞的植入。阴道加德纳菌(GV),一种厌氧细菌,是天然阴道菌群的组成部分,当它开始过度生长并成为优势物种时,可能与细菌性阴道病(BV)有关。乳酸杆菌物种丰度和GV的降低与女性不育有关。来自体外研究的数据表明,GV产生的唾液酸酶可能促进乳头状瘤和其他性传播病毒的进入和生长。此外,根据过去的一些研究,可以说GV和BV与子宫癌的发生发展有关。然而,关于GV和HPV引起不孕症的确切机制仍然没有足够的信息,这需要更多的研究。
    A prevalent sexually transmitted infection, the human papillomavirus (HPV) is typically obtained just after the first sexual activity. The majority of HPV infections are asymptomatic and temporary. Cervical, anal, penile, vaginal, vulvar, and oropharyngeal cancers can occur due to recurrent infections with high-risk (hr)-HPV strains, generally decades later. Infections with HPV are significantly associated with reproductive function abnormalities. Per recent research, HPV infections may result in male infertility by reducing sperm motility. The hr-HPV infection was a risk factor for miscarriage, and the indiscriminate HPV genotype increased the probability of premature labor unexpectedly. Women\'s endometrial trophoblastic cell implantation is decreased by HPV. Gardnerella vaginalis (GV), an anaerobic bacterium that is a component of the natural vaginal flora, can be associated with bacterial vaginosis (BV) when it starts to overgrow and emerge as the dominant species. Reduced Lactobacillus species abundance and GV are linked to female infertility. Data from in vitro studies suggests that sialidase produced by GV may facilitate the entry and growth of papilloma and other sexually transmitted viruses. Also, based on some studies conducted in the past, it can be said that GV and BV are associated with the development of uterine cancer. However, there is still not enough information about the exact mechanism of GV and HPV in causing infertility, which requires more research.
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