tractography

纤维束造影
  • 文章类型: Journal Article
    手术岛叶癫痫(OIE)是一种罕见的疾病,在经过精心选择的病例中可以进行手术。尽管与OIE手术相关的神经系统并发症发生率很高,大多数术后缺陷完全迅速恢复。我们通过调查10例OIE手术后结构网络的纵向重组,为这种特殊的功能恢复模式提供了见解。
    在手术前(t0)和术后6个月(t1)和12个月(t2)进行结构T1和扩散加权MRI。这些图像是用原件处理的,综合结构连通性管道。使用我们的方法,我们在t0和t1时间点之间以及t1和t2时间点之间进行了比较,以表征进行性结构重塑。
    我们发现了一种广泛的术后变化模式,主要发生在手术半球,其中大部分包括连通性强度(CS)的降低和反映局部连通性的区域图论测度(rGTM)。我们还观察到CS和rGTM的增加主要在位于切除腔附近的区域和对侧健康半球中。最后,大多数结构变化出现在手术后的前六个月(即,在t0和t1之间)。
    据我们所知,这项研究首次描述了OIE手术后的结构连通性变化.我们的分析揭示的同侧连通性减少可能是由于术后癫痫发作控制后癫痫发作相关结构改变的逆转所致。此外,在周围切除区域和对侧半球的连接的加强可能与补偿性结构可塑性相容,该过程可能有助于局灶性癫痫患者手术岛叶切除术后的功能恢复。
    UNASSIGNED: Operculo-insular epilepsy (OIE) is a rare condition amenable to surgery in well-selected cases. Despite the high rate of neurological complications associated with OIE surgery, most postoperative deficits recover fully and rapidly. We provide insights into this peculiar pattern of functional recovery by investigating the longitudinal reorganization of structural networks after surgery for OIE in 10 patients.
    UNASSIGNED: Structural T1 and diffusion-weighted MRIs were performed before surgery (t0) and at 6 months (t1) and 12 months (t2) postoperatively. These images were processed with an original, comprehensive structural connectivity pipeline. Using our method, we performed comparisons between the t0 and t1 timepoints and between the t1 and t2 timepoints to characterize the progressive structural remodeling.
    UNASSIGNED: We found a widespread pattern of postoperative changes primarily in the surgical hemisphere, most of which consisted of reductions in connectivity strength (CS) and regional graph theoretic measures (rGTM) that reflect local connectivity. We also observed increases in CS and rGTMs predominantly in regions located near the resection cavity and in the contralateral healthy hemisphere. Finally, most structural changes arose in the first six months following surgery (i.e., between t0 and t1).
    UNASSIGNED: To our knowledge, this study provides the first description of postoperative structural connectivity changes following surgery for OIE. The ipsilateral reductions in connectivity unveiled by our analysis may result from the reversal of seizure-related structural alterations following postoperative seizure control. Moreover, the strengthening of connections in peri-resection areas and in the contralateral hemisphere may be compatible with compensatory structural plasticity, a process that could contribute to the recovery of functions seen following operculo-insular resections for focal epilepsy.
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  • 文章类型: Journal Article
    流线牵引成像局部跟踪从纤维取向分布(FOD)函数提取的峰值方向,缺乏关于整个纤维束趋势的全球信息。因此,它容易产生错误的轨道,而错过真正的正连接。在这项工作中,我们提出了一种新的基于束特异性束图分布(BTD)函数的束特异性束图成像(BST)方法,通过在光纤束掩模中结合全局信息,直接重建从起始区域到终止区域的光纤轨迹。提出了任何高阶流线微分方程的统一框架,以描述基于扩散矢量场定义的具有不相交流线的纤维束。在全球范围内,通过最小化能量优化模型,将纤维束成像过程简化为BTD系数的估计,并通过引入束束信息来提供解剖先验,从而在先验指导下表征BTD与扩散张量向量之间的关系。在模拟霍夫上进行了实验,Sine,圈数据,ISMRM2015Tractography挑战数据,FiberCup数据,以及来自人类连接体项目(HCP)的体内数据,用于定性和定量评估。结果表明,我们的方法可以更准确地重建复杂的纤维几何结构。BTD在局部水平上减少了误差偏差和积累,在重建远程,扭曲,和大扇面。
    Streamline tractography locally traces peak directions extracted from fiber orientation distribution (FOD) functions, lacking global information about the trend of the whole fiber bundle. Therefore, it is prone to producing erroneous tracks while missing true positive connections. In this work, we propose a new bundle-specific tractography (BST) method based on a bundle-specific tractogram distribution (BTD) function, which directly reconstructs the fiber trajectory from the start region to the termination region by incorporating the global information in the fiber bundle mask. A unified framework for any higher-order streamline differential equation is presented to describe the fiber bundles with disjoint streamlines defined based on the diffusion vectorial field. At the global level, the tractography process is simplified as the estimation of BTD coefficients by minimizing the energy optimization model, and is used to characterize the relations between BTD and diffusion tensor vector under the prior guidance by introducing the tractogram bundle information to provide anatomic priors. Experiments are performed on simulated Hough, Sine, Circle data, ISMRM 2015 Tractography Challenge data, FiberCup data, and in vivo data from the Human Connectome Project (HCP) for qualitative and quantitative evaluation. Results demonstrate that our approach reconstructs complex fiber geometry more accurately. BTD reduces the error deviation and accumulation at the local level and shows better results in reconstructing long-range, twisting, and large fanning tracts.
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  • 文章类型: Letter
    VandenHoven等人。质疑我对Wernicke关于弓形束状结构(AF)在文字制作中的作用的解释。这里,我澄清并捍卫我的解释。他们还质疑我现代账户中AF减法的假设,指出由于重叠的终止,减法很难在解剖学上区分。这里,我明确表示,终止合同的重叠实际上是我帐户的一部分,其中差异受损减法解释了患者的差异命名和重复表现以及重复表现的类型。
    Van den Hoven et al. contested my interpretation of Wernicke regarding the role of the arcuate fasciculus (AF) in word production. Here, I clarify and defend my interpretation. They also questioned the assumption of AF subtracts in my modern account, stating that subtracts are difficult to distinguish anatomically due to overlapping terminations. Here, I make clear that overlap in terminations was actually part of my account, in which differentially damaged subtracts explained patients\' differential naming and repetition performance as well as types of repetition performance.
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  • 文章类型: Journal Article
    本研究旨在阐明1p/19q共缺失对优势半球岛叶弥漫性神经胶质瘤患者结构连通性改变的影响。
    我们纳入了32例左侧岛叶胶质瘤和20例健康对照。用弥散MRI,我们应用了相关纤维束描记术,差分纤维束造影,和图论分析,探索与1p/19q共缺失相关的潜在连通性。
    研究表明,关键的深层内侧纤维束的定量各向异性(QA),包括前丘脑辐射,上丘脑辐射,穹窿,和扣带,与1p/19q共缺失呈显著负相关(FDR=4.72×10-5)。这些片段对于维持大脑网络的完整性至关重要。差异分析进一步支持这些发现(FWER校正的p<0.05)。与HC组相比,1p/19q非共缺失组在肿瘤周围区域中表现出显著更高的聚类系数(FDR校正的p<0.05)和降低的介数中心性(FDR校正的p<0.05)。图论分析表明,与共缺失患者和健康对照相比,非共缺失患者在瘤周大脑区域的局部聚集性增加,介数中心性降低(FDR校正的p<0.05)。此外,尽管通过修正并不重要,1p/19q共缺失患者的加权平均聚类系数呈较低趋势,传递性,小世界,和全球效率,与没有共缺失的患者相比,加权路径长度的趋势更高。
    这项研究的结果强调了1p/19q共缺失在改变岛叶胶质瘤患者结构连通性方面的重要作用。脑网络的这些改变可能对优势半球岛叶胶质瘤患者的神经功能具有深远的影响。
    UNASSIGNED: This study aimed to elucidate the influences of 1p/19q co-deletion on structural connectivity alterations in patients with dominant hemisphere insular diffuse gliomas.
    UNASSIGNED: We incorporated 32 cases of left insular gliomas and 20 healthy controls for this study. Using diffusion MRI, we applied correlational tractography, differential tractography, and graph theoretical analysis to explore the potential connectivity associated with 1p/19q co-deletion.
    UNASSIGNED: The study revealed that the quantitative anisotropy (QA) of key deep medial fiber tracts, including the anterior thalamic radiation, superior thalamic radiation, fornix, and cingulum, had significant negative associations with 1p/19q co-deletion (FDR = 4.72 × 10-5). These tracts are crucial in maintaining the integrity of brain networks. Differential analysis further supported these findings (FWER-corrected p < 0.05). The 1p/19q non-co-deletion group exhibited significantly higher clustering coefficients (FDR-corrected p < 0.05) and reduced betweenness centrality (FDR-corrected p < 0.05) in regions around the tumor compared to HC group. Graph theoretical analysis indicated that non-co-deletion patients had increased local clustering and decreased betweenness centrality in peritumoral brain regions compared to co-deletion patients and healthy controls (FDR-corrected p < 0.05). Additionally, despite not being significant through correction, patients with 1p/19q co-deletion exhibited lower trends in weighted average clustering coefficient, transitivity, small worldness, and global efficiency, while showing higher tendencies in weighted path length compared to patients without the co-deletion.
    UNASSIGNED: The findings of this study underline the significant role of 1p/19q co-deletion in altering structural connectivity in insular glioma patients. These alterations in brain networks could have profound implications for the neural functionality in patients with dominant hemisphere insular gliomas.
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  • 文章类型: Journal Article
    在过去的二十年中,扩散张量成像(DTI)的使用取得了重大进展,特别是随着用于术前计划的关联束纤维束造影的发展。然而,投影束难以彼此区分,并且纤维束造影研究未能重建这些从/到脊髓的上升/下降途径。本研究提出了专门为投影束纤维束成像设计的感兴趣区域(ROI)图集。49名健康受试者被纳入这项前瞻性研究。使用相同的3TMRI扫描仪获取大脑DTI,有32个扩散方向。使用FSL软件包校正失真。使用前连合(AC)-后连合(PC)线在以下标志上绘制ROI:皮质脊髓束的金字塔,红髓核的中尾部分,脑桥网状核用于皮质网状束,小脑的上小脑和下小脑,分别,脊髓小脑前后束,背柱的皱褶和楔子核,和脊髓丘脑束的腹-后外侧核。使用DSIStudio软件使用确定性算法进行纤维跟踪。ROI坐标,根据AC-PC线,为每个管道给出。获得了每个管道的纤维束造影,允许三维渲染和跟踪指标之间的比较。本研究报告了用于每个投影道的纤维束造影的特定ROI的准确设计。为了区分脊髓水平的投影束,这可能是有用的工具。
    The use of diffusion tensor imaging (DTI) has seen significant development over the last two decades, in particular with the development of the tractography of association tracts for preoperative planning of surgery. However, projection tracts are difficult to differentiate from one another and tractography studies have failed to reconstruct these ascending/descending pathways from/to the spinal cord. The present study proposes an atlas of regions of interest (ROIs) designed specifically for projection tracts tractography. Forty-nine healthy subjects were included in this prospective study. Brain DTI was acquired using the same 3 T MRI scanner, with 32 diffusion directions. Distortions were corrected using the FSL software package. ROIs were drawn using the anterior commissure (AC)-posterior commissure (PC) line on the following landmarks: the pyramid for the corticospinal tract, the medio-caudal part of the red nucleus for the rubrospinal tract, the pontine reticular nucleus for corticoreticular tract, the superior and inferior cerebellar peduncles for, respectively, the anterior and posterior spinocerebellar tract, the gracilis and cuneatus nucleus for the dorsal columns, and the ventro-posterolateral nucleus for the spinothalamic tract. Fiber tracking was performed using a deterministic algorithm using DSI Studio software. ROI coordinates, according to AC-PC line, were given for each tract. Tractography was obtained for each tract, allowing tridimensional rendering and comparison of tracking metrics between tracts. The present study reports the accurate design of specific ROIs for tractography of each projection tract. This could be a useful tool in order to differentiate projection tracts at the spinal cord level.
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  • 文章类型: Letter
    暂无摘要。
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  • 文章类型: Journal Article
    在纤维束造影中,冗余构成了重大挑战,通常会导致包括解剖学上令人难以置信的流线或无法准确代表大脑白质结构的示踪图。当前的过滤方法旨在通过解决这些问题来完善跟踪图,但是它们缺乏统一的冗余度量,并且计算要求很高。
    我们提出了一种新颖的框架,用于基于过滤示波图子集来量化示波图冗余,而无需认可特定的过滤算法。我们的方法根据流线的解剖合理性和扩散信号表示定义冗余,确定假阳性流线数量和示踪图冗余的下限和上限。
    我们将此框架应用于HumanConnectome项目的示踪图,使用几何合理性和统计方法,由简化的属性和集合共识提供信息。我们的结果为示踪图的冗余和示踪图的错误发现率建立了界限。
    这项研究促进了对牵引图冗余的理解,并支持了牵引图方法的改进。未来的研究将集中在进一步验证提出的框架和探索示波图压缩的可能性。
    UNASSIGNED: In tractography, redundancy poses a significant challenge, often resulting in tractograms that include anatomically implausible streamlines or those that fail to represent the brain\'s white matter architecture accurately. Current filtering methods aim to refine tractograms by addressing these issues, but they lack a unified measure of redundancy and can be computationally demanding.
    UNASSIGNED: We propose a novel framework to quantify tractogram redundancy based on filtering tractogram subsets without endorsing a specific filtering algorithm. Our approach defines redundancy based on the anatomical plausibility and diffusion signal representation of streamlines, establishing both lower and upper bounds for the number of false-positive streamlines and the tractogram redundancy.
    UNASSIGNED: We applied this framework to tractograms from the Human Connectome Project, using geometrical plausibility and statistical methods informed by the streamlined attributes and ensemble consensus. Our results establish bounds for the tractogram redundancy and the false-discovery rate of the tractograms.
    UNASSIGNED: This study advances the understanding of tractogram redundancy and supports the refinement of tractography methods. Future research will focus on further validating the proposed framework and exploring tractogram compression possibilities.
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  • 文章类型: Journal Article
    背景:内囊前肢(ALIC)的深部脑刺激(DBS)是一种新兴的治疗方法,难治性强迫症(OCD)。假设DBS的治疗效果是由OCD症状背后的分布式皮质-纹状体-丘脑-皮层网络的直接调节介导的。然而,DBS发挥其治疗作用的确切潜在机制仍不清楚.
    方法:在接受严重DBS的五名参与者中,难治性强迫症(3名响应者,2个无响应者),我们在获取功能性MRI时进行了DBS开/关循环模式,以确定刺激在各种双极构型中的网络效应.我们还使用扩散加权成像(DWI)进行了纤维束成像,以将DBS的功能影响与主动刺激接触和功能性大脑网络之间的潜在结构连通性联系起来。
    结果:我们发现治疗性DBS具有分布效应,抑制诸如眶额皮质等区域的BOLD活动,背内侧前额叶皮质,和丘脑底核与非治疗构型相比。由治疗性DBS抑制的许多区域是默认模式网络(DMN)的组件。此外,来自治疗配置的估计刺激场表现出与DMN核心节点的显著结构连通性。
    结论:用于OCD的治疗性DBS相对于非治疗性构型在DMN内的一组分布区域内抑制BOLD活性。我们建议这些影响可能是通过DBS有源触点周围的结构性白质连接中断通信来介导的。
    UNASSIGNED: Deep brain stimulation (DBS) of the anterior limb of the internal capsule (ALIC) is an emerging treatment for severe, refractory obsessive-compulsive disorder (OCD). The therapeutic effects of DBS are hypothesized to be mediated by direct modulation of a distributed cortico-striato-thalmo-cortical network underlying OCD symptoms. However, the exact underlying mechanism by which DBS exerts its therapeutic effects still remains unclear.
    UNASSIGNED: In five participants receiving DBS for severe, refractory OCD (3 responders, 2 non-responders), we conducted a DBS On/Off cycling paradigm during the acquisition of functional MRI to determine the network effects of stimulation across a variety of bipolar configurations. We also performed tractography using diffusion-weighted imaging (DWI) to relate the functional impact of DBS to the underlying structural connectivity between active stimulation contacts and functional brain networks.
    UNASSIGNED: We found that therapeutic DBS had a distributed effect, suppressing BOLD activity within regions such as the orbitofrontal cortex, dorsomedial prefrontal cortex, and subthalamic nuclei compared to non-therapeutic configurations. Many of the regions suppressed by therapeutic DBS were components of the default mode network (DMN). Moreover, the estimated stimulation field from the therapeutic configurations exhibited significant structural connectivity to core nodes of the DMN.
    UNASSIGNED: Therapeutic DBS for OCD suppresses BOLD activity within a distributed set of regions within the DMN relative to non-therapeutic configurations. We propose that these effects may be mediated by interruption of communication through structural white matter connections surrounding the DBS active contacts.
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  • 文章类型: Journal Article
    视神经中基于扩散的纤维束造影需要解剖标志信息(感兴趣区域[ROI])辅助的采样策略。我们的目的是研究专家安置的可行性,高分辨率T1加权ROI数据传输到较低空间分辨率的扩散加权图像。获取来自20名志愿者的板坯体积并进行预处理,包括失真偏差校正和伪影减少。约束球形反卷积用于生成定向扩散信息网格(纤维取向分布模型[FOD])。三位神经放射学家在扩散成像变体和结构数据集上标记了标志。将结构ROI信息(体积内插屏气序列[VIBE])分别记录(与6/12自由度[DOF]成线性)到单发EPI(ss-EPI)和读出分段EPI(rs-EPI)体积上,分别。在视神经通路的靶向纤维束造影任务中比较了所有八个ROI/FOD组合。专家中放置的ROI的评估者间可靠性在VIBE图像中最高(较低的置信区间为0.84至0.97,平均0.91),在ss-EPI(0.61至0.95,平均0.79)和rs-EPI(0.59至0.86,平均0.70)中均较低。基于流线选择性能的示踪成像成功率在注册到rs-EPIFOD(6-DOF)的VIBE绘制ROI中最高(70.0%超过5%-阈值,上限与失败的比率39/16),其次是12-DOF注册(67.5%;41/16)和未注册的VIBE(67.5%;40/23)。在ss-EPIFOD上,VIBE-ROI数据集总体上获得的流线较少,每个流线均为55.0%,高于5%的阈值,并且上限与失败的比率较低(6-DOF:35/36;12-DOF:34/34,未注册33/36)。VIBE放置的ROI(最高的评分者间可靠性)与6-DOF注册到rs-EPI目标(最佳流线选择性能)的组合最适合于小组研究所需的白质模板生成。
    Diffusion-based tractography in the optic nerve requires sampling strategies assisted by anatomical landmark information (regions of interest [ROIs]). We aimed to investigate the feasibility of expert-placed, high-resolution T1-weighted ROI-data transfer onto lower spatial resolution diffusion-weighted images. Slab volumes from 20 volunteers were acquired and preprocessed including distortion bias correction and artifact reduction. Constrained spherical deconvolution was used to generate a directional diffusion information grid (fibre orientation distribution-model [FOD]). Three neuroradiologists marked landmarks on both diffusion imaging variants and structural datasets. Structural ROI information (volumetric interpolated breath-hold sequence [VIBE]) was respectively registered (linear with 6/12 degrees of freedom [DOF]) onto single-shot EPI (ss-EPI) and readout-segmented EPI (rs-EPI) volumes, respectively. All eight ROI/FOD-combinations were compared in a targeted tractography task of the optic nerve pathway. Inter-rater reliability for placed ROIs among experts was highest in VIBE images (lower confidence interval 0.84 to 0.97, mean 0.91) and lower in both ss-EPI (0.61 to 0.95, mean 0.79) and rs-EPI (0.59 to 0.86, mean 0.70). Tractography success rate based on streamline selection performance was highest in VIBE-drawn ROIs registered (6-DOF) onto rs-EPI FOD (70.0% over 5%-threshold, capped to failed ratio 39/16) followed by both 12-DOF-registered (67.5%; 41/16) and nonregistered VIBE (67.5%; 40/23). On ss-EPI FOD, VIBE-ROI-datasets obtained fewer streamlines overall with each at 55.0% above 5%-threshold and with lower capped to failed ratio (6-DOF: 35/36; 12-DOF: 34/34, nonregistered 33/36). The combination of VIBE-placed ROIs (highest inter-rater reliability) with 6-DOF registration onto rs-EPI targets (best streamline selection performance) is most suitable for white matter template generation required in group studies.
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  • 文章类型: Journal Article
    背景:大麻在美国通常使用。然而,长期使用大麻与白质(WM)完整性的改变有关。在使用大麻(PWC)的人群中调查WM的研究产生了不同的结果,这可能是由于各种因素,包括对单个WM区域的关注。这里,我们使用基于模块的方法检查了WM连通性,以帮助澄清大麻使用是否与WM组织差异相关.
    方法:Connectomics用于映射内部和内部连接的皮层和皮层下区域的复杂网络。大脑组织的一个关键概念是存在密集互连区域的群体,称为模块。这里,我们使用WM结构连通性估计来比较经常使用大麻的成年人之间的连接组组织(n=53),和不使用大麻的成年人(n=60)。我们量化了整个大脑和特定模块中网络组织的各个方面。
    结果:校正全脑指标的多重比较后,组间无显著结果。当考虑10个已识别模块的网络组织度量的组差异时,我们观察到成人PWC显示出较高的模块内学位,本地效率,与未使用大麻的成年人相比,右侧皮质下模块的网络强度。
    结论:这些结果表明,成人使用大麻与皮质下WM网络组织的改变有关。观察到的WM组织差异可能是由于内源性大麻素系统参与了WM生长过程的改变。
    BACKGROUND: Cannabis is commonly used in the United States. However, chronic cannabis use has been linked to alterations in white matter (WM) integrity. Studies investigating WM in people who use cannabis (PWC) have produced varying results, which may be due to a variety of factors, including a focus on individual WM tracts. Here, we examined WM connectivity using a module-based approach to help clarify whether cannabis use is associated with differences in WM organization.
    METHODS: Connectomics is used to map complex networks of inter and intra-connected cortical and subcortical regions. A key concept of brain organization is the presence of groups of densely interconnected regions, referred to as modules. Here, we used WM structural connectivity estimates to compare connectome organization between adults who used cannabis regularly (n=53), and adults who did not use cannabis (n=60). We quantified aspects of network organization both across the whole brain and within specific modules.
    RESULTS: There were no significant results between groups after correcting for multiple comparisons for whole-brain metrics. When considering group differences in network organization metrics for 10 identified modules, we observed that adult PWC showed higher within-module degree, local efficiency, and network strength in a right subcortical module relative to adults that did not use cannabis.
    CONCLUSIONS: These results suggest that cannabis use in adults is associated with alterations of subcortical WM network organization. The observed differences in WM organization may be due to the involvement of the endocannabinoid system in the alteration of WM growth processes.
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