teleosts

硬骨鱼
  • 文章类型: Journal Article
    barramundi(Latescalcarifer),一个重要的水产养殖物种,通常显示银到青铜色。然而,现在注意到像“熊猫”表型这样的罕见变异,以黑色(PB)和金色(PG)斑块的斑点状图案为特征。这种表型为探索硬骨鱼颜色变化的分子机制提供了机会。与许多鱼的稳定颜色图案不同,“熊猫”变体表现出表型可塑性,动态响应未知的提示。我们提出了遗传因素和表观遗传修饰的复杂相互作用,专注于DNA甲基化。通过多组学方法,我们分析了PB和PG斑块之间的转录组和甲基化模式。我们的研究揭示了与黑素小体运输和色团分化有关的差异基因表达。尽管导致PB-PG差异的特定基因仍然难以捉摸,候选基因如asip1,asip2,mlph,mreg已经被确认了.甲基化成为“熊猫”表型的潜在贡献者,基因启动子如hand2和dynamin的变化可能会影响着色。这项研究为进一步探索罕见的澳大利亚肺鱼颜色图案奠定了基础,增强我们对硬骨鱼颜色多样性的理解。此外,它强调了“熊猫”表型作为研究成人肤色的模型的潜力。
    The barramundi (Lates calcarifer), a significant aquaculture species, typically displays silver to bronze coloration. However, attention is now drawn to rare variants like the \"panda\" phenotype, characterized by blotch-like patterns of black (PB) and golden (PG) patches. This phenotype presents an opportunity to explore the molecular mechanisms underlying color variations in teleosts. Unlike stable color patterns in many fish, the \"panda\" variant demonstrates phenotypic plasticity, responding dynamically to unknown cues. We propose a complex interplay of genetic factors and epigenetic modifications, focusing on DNA methylation. Through a multiomics approach, we analyze transcriptomic and methylation patterns between PB and PG patches. Our study reveals differential gene expression related to melanosome trafficking and chromatophore differentiation. Although the specific gene responsible for the PB-PG difference remains elusive, candidate genes like asip1, asip2, mlph, and mreg have been identified. Methylation emerges as a potential contributor to the \"panda\" phenotype, with changes in gene promoters like hand2 and dynamin possibly influencing coloration. This research lays the groundwork for further exploration into rare barramundi color patterns, enhancing our understanding of color diversity in teleosts. Additionally, it underscores the \"panda\" phenotype\'s potential as a model for studying adult skin coloration.
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  • 文章类型: Journal Article
    红色斑点石斑鱼Epinephelusakaara是具有经济重要性的海洋物种,也有灭绝的危险。本研究调查了高水温对幼年阿卡拉雌性生长和成熟的影响。孵化后160-420天(dph),鱼保持在自然水温(NT)和恒定的高水温(HT)下。从240dph,HT组的总长度和体重均大于NT组。360dph之后,与NT组相比,HT组的性腺指数也增加。仅在330、360和390dph的HT组中观察到成熟卵母细胞。两组的kiss1和kiss2水平均增加到240和270dph;然而,在240dph的HT组中,它们更大。同样,360dph后的gpr54水平在HT组中更高,表明kisspeptin通过其受体gpr54与成熟有关。360dph后,HT组的fshβ和lhβ水平更高。160dph(300dph除外)后,HT组的雌二醇-17β(E2)水平高于NT组,表明较高的E2水平会触发成熟,与fshβ和lhβ增加有关。这项研究提供了证据,表明高水温可有效地加速幼年E.akaara的生长并触发其早期成熟。通过调节gpr54,fshβ,lhβ,E2水平。
    The red spotted grouper Epinephelus akaara is a marine species of economic importance and also at risk of extinction. This study investigated the effects of high water temperature on the growth and maturation of juvenile E. akaara females. From 160-420 days post-hatching (dph), the fish were maintained under natural water temperature (NT) and a constant high-water temperature (HT). From 240 dph, both the total length and body weight in the HT group were greater than in NT group. After 360 dph, the gonadosomatic index was also increased in the HT group compared to NT group. Mature oocytes were only observed in the HT group at 330, 360, and 390 dph. Both kiss1 and kiss2 levels increased at 240 and 270 dph in both groups; however, they were greater in the HT group at 240 dph. Similarly, gpr54 levels after 360 dph were greater in the HT group, suggesting that kisspeptin is related to maturation via its receptor gpr54. Levels of fshβ and lhβ were greater in the HT group after 360 dph. Estradiol-17β (E2) levels after 160 dph (except 300 dph) were greater in the HT group than in the NT group, suggesting that the higher E2 levels trigger maturation, and is related to increased fshβ and lhβ. This study provides evidence that high water temperature is effective in accelerating growth and triggering early maturation of juvenile E. akaara, via regulating gpr54, fshβ, lhβ, and E2 levels.
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  • 文章类型: Journal Article
    早期胚胎发育至关重要,但在动物类群中也非常不同。由于基因表达的空间和时间控制,轴的形成和细胞谱系的规范发生。这个复杂的系统涉及各种信号通路和发育基因,如转录因子以及其他维持细胞状态的分子相互作用物,包括几种类型的表观遗传标记。5mCDNA甲基化,真核生物中胞嘧啶的化学修饰,代表一个这样的标记。通过影响染色质(高级DNA结构)的压实,DNA甲基化可以抑制或诱导转录活性。哺乳动物表现出受精后受精卵中亲本基因组DNA甲基化的重编程,以及后来的原始生殖细胞(PGCs)。甲基化重编程的这些时期是否在进化上是保守的,或者哺乳动物的创新,是一个新兴的问题。因此,研究其他脊椎动物谱系的这些过程很重要,和硬骨鱼,它们丰富的物种,表型多样性,和多轮全基因组复制,为回答这样的问题提供完美的研究场所。这篇综述旨在通过总结不同研究小组研究硬骨鱼甲基化重编程模式的发现,来简要介绍鱼类早期发育中DNA甲基化重编程的最新技术。同时记住所用方法的后果,然后将这些模式与哺乳动物的重新编程模式进行比较。
    Early embryonic development is crucially important but also remarkably diverse among animal taxa. Axis formation and cell lineage specification occur due to both spatial and temporal control of gene expression. This complex system involves various signaling pathways and developmental genes such as transcription factors as well as other molecular interactants that maintain cellular states, including several types of epigenetic marks. 5mC DNA methylation, the chemical modification of cytosines in eukaryotes, represents one such mark. By influencing the compaction of chromatin (a high-order DNA structure), DNA methylation can either repress or induce transcriptional activity. Mammals exhibit a reprogramming of DNA methylation from the parental genomes in the zygote following fertilization, and later in primordial germ cells (PGCs). Whether these periods of methylation reprogramming are evolutionarily conserved, or an innovation in mammals, is an emerging question. Looking into these processes in other vertebrate lineages is thus important, and teleost fish, with their extensive species richness, phenotypic diversity, and multiple rounds of whole genome duplication, provide the perfect research playground for answering such a question. This review aims to present a concise state of the art of DNA methylation reprogramming in early development in fish by summarizing findings from different research groups investigating methylation reprogramming patterns in teleosts, while keeping in mind the ramifications of the methodology used, then comparing those patterns to reprogramming patterns in mammals.
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  • 文章类型: Journal Article
    硬骨鱼表现出最明显和最广泛的成年神经发生。最近,据报道,鱼类视神经顶盖(OT)的功能发育和新生神经元的命运。为了确定神经发生在OT中的作用,这项研究使用组织学,免疫组织化学,和18个成年莫莉鱼标本(Poeciliasphenops)的电子显微镜研究。Molly鱼的OT是位于中脑背侧的双侧叶状结构。它表现出由交替的纤维层和细胞层组成的层压结构,分为六个主要层次。视神经层(SO)由视神经纤维提供,其中神经纤维是主要成分。在纤维层和皮肤表层(SFGS)中观察到具有微管束的放射状双极神经元。此外,可以观察到少突胶质细胞的过程包裹在神经纤维周围。地层专辑centrale(SAC)主要由地层中心(SGC)的轴突和大构造组成,梨形,和水平神经元。SO的神经元细胞和SAC的大顶盖细胞表达自噬相关蛋白5(APG5)。白细胞介素-1β(IL-1β)在SGC的神经元和神经胶质细胞中均表达。此外,诱导型一氧化氮合酶(iNOS)在SAC突触层的神经纤维和脑室周围层(SPV)的颗粒细胞中表达。此外,转化生长因子β(TGF-β),SRY盒转录因子9(SOX9),肌肉生长抑制素在增殖神经元中明显表达。在所有地层中,小胶质细胞表达S100蛋白和少突胶质细胞谱系转录因子2(Olig2),少突胶质细胞,和星形胶质细胞。总之,可以识别视神经顶盖中不同种类的神经元,每个人都有不同的角色。星形胶质细胞的存在,增殖神经元,干细胞突出了OT的再生能力。研究重点:Molly鱼的OT表现出由交替的纤维层和细胞层组成的层状结构,分为六个主要层次。在纤维层和皮肤表层(SFGS)中观察到具有微管束的放射状双极神经元。中央地层(SAC)主要由中央地层(SGC)的轴突和大构造组成,梨形,和水平神经元。诱导型一氧化氮合酶(iNOS)在SAC突触层的神经纤维和脑室周围(SPV)的颗粒细胞中表达。此外,转化生长因子β(TGF-β),SRY盒转录因子9(SOX9),肌肉生长抑制素在增殖神经元中明显表达。星形胶质细胞的存在,增殖神经元,干细胞突出了OT的再生能力。
    Teleost fish exhibit the most pronounced and widespread adult neurogenesis. Recently, functional development and the fate of newborn neurons have been reported in the optic tectum (OT) of fish. To determine the role of neurogenesis in the OT, this study used histological, immunohistochemical, and electron microscopic investigations on 18 adult Molly fish specimens (Poecilia sphenops). The OT of the Molly fish was a bilateral lobed structure located in the dorsal part of the mesencephalon. It exhibited a laminated structure made up of alternating fiber and cellular layers, which were organized into six main layers. The stratum opticum (SO) was supplied by optic nerve fibers, in which the neuropil was the main component. Radial bipolar neurons that possessed bundles of microtubules were observed in the stratum fibrosum et griseum superficiale (SFGS). Furthermore, oligodendrocytes with their processes wrapped around the nerve fibers could be observed. The stratum album centrale (SAC) consisted mainly of the axons of the stratum griseum centrale (SGC) and the large tectal, pyriform, and horizontal neurons. The neuronal cells of the SO and large tectal cells of the SAC expressed autophagy-related protein-5 (APG5). Interleukin-1β (IL-1β) was expressed in both neurons and glia cells of SGC. Additionally, inducible nitric oxide synthase (iNOS) was expressed in the neuropil of the SAC synaptic layer and granule cells of the stratum periventriculare (SPV). Also, transforming growth factor beta (TGF-β), SRY-box transcription factor 9 (SOX9), and myostatin were clearly expressed in the proliferative neurons. In all strata, S100 protein and Oligodendrocyte Lineage Transcription Factor 2 (Olig2) were expressed by microglia, oligodendrocytes, and astrocytes. In conclusion, it was possible to identify different varieties of neurons in the optic tectum, each with a distinct role. The existence of astrocytes, proliferative neurons, and stem cells highlights the regenerative capacity of OT. RESEARCH HIGHLIGHTS: The OT of the Molly fish exhibited a laminated structure made up of alternating fiber and cellular layers, which were organized into six main layers. Radial bipolar neurons that possessed bundles of microtubules were observed in the stratum fibrosum et griseum superficiale (SFGS). The stratum album central (SAC) consisted mainly of the axons of the stratum griseum centrale (SGC) and the large tectal, pyriform, and horizontal neurons. Inducible nitric oxide synthase (iNOS) was expressed in the neuropil of the SAC synaptic layer and granule cells of the stratum periventricular (SPV). Also, transforming growth factor beta (TGF-β), SRY-box transcription factor 9 (SOX9), and myostatin were clearly expressed in the proliferative neurons. The existence of astrocytes, proliferative neurons, and stem cells highlights the regenerative capacity of OT.
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  • 文章类型: Editorial
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  • 文章类型: Journal Article
    这篇全面的综述探讨了鱼类血小板的作用,在凝血方面被认为在功能上类似于血小板的细胞,但它们的起源和形态不同。尽管硬骨鱼和哺乳动物之间存在进化距离,基因组研究揭示了血液凝固的保守模式,虽然也有例外,如缺乏因素属于接触系统。除了凝结,鱼类血小板具有重要的免疫功能。这些细胞表达促炎基因和参与抗原呈递的基因,提示在先天和适应性免疫反应中的作用。此外,证明了它们的吞噬能力,在对抗病原微生物的斗争中至关重要,强调了他们在免疫方面的多方面参与。最后,强调需要进一步研究这些细胞的功能,为了更好地了解他们参与维护水产养殖鱼类的健康。提倡使用标准化和自动化的方法来分析这些活动,强调它们有助于早期发现压力或感染的潜力,从而最大限度地减少这些不利情况在水产养殖领域可能产生的经济损失。
    This comprehensive review examines the role of fish thrombocytes, cells considered functionally analogous to platelets in terms of coagulation, but which differ in their origin and morphology. Despite the evolutionary distance between teleosts and mammals, genomic studies reveal conserved patterns in blood coagulation, although there are exceptions such as the absence of factors belonging to the contact system. Beyond coagulation, fish thrombocytes have important immunological functions. These cells express both proinflammatory genes and genes involved in antigen presentation, suggesting a role in both innate and adaptive immune responses. Moreover, having demonstrated their phagocytic abilities, crucial in the fight against pathogenic microorganisms, underscores their multifaceted involvement in immunity. Finally, the need for further research on the functions of these cells is highlighted, in order to better understand their involvement in maintaining the health of aquaculture fish. The use of standardized and automated methods for the analysis of these activities is advocated, emphaiszing their potential to facilitate the early detection of stress or infection, thus minimizing the economic losses that these adverse situations can generate in the field of aquaculture.
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  • 文章类型: Journal Article
    绿松石鱼(Nothobranchiusfurzeri)自然进化出约六个月的短寿命,并表现出影响多个器官的衰老标志。这些标志包括蛋白质聚集,端粒缩短,细胞衰老,和全身性炎症。绿松石猎鱼具有脊椎动物特异性先天和适应性免疫系统的全谱。然而,在他们最近的进化史上,他们失去了存在于其他硬骨鱼中的粘膜特异性抗体亚型亚群。随着年龄的增长,绿松石飞鱼的免疫系统经历了巨大的细胞和系统变化。这些变化涉及炎症增加,减少抗体多样性,肠道中病原微生物的患病率增加,免疫祖细胞簇中广泛的DNA损伤。总的来说,绿松石毛鱼发生的各种与年龄相关的变化表明,尽管经历了数亿年的进化分离,硬骨鱼和哺乳动物具有免疫系统老化的共同特征。因此,在killifish免疫系统中观察到的自发衰老为发现与脊椎动物免疫系统衰老相关的基本和保守方面提供了极好的机会。此外,该物种的自然寿命只有几个月,连同它的实验性可达性,提供了一个强大的平台,用于测试干预措施,以改善整个生物体中与年龄相关的功能障碍,并可能为人类衰老相关疾病的基于免疫疗法的发展提供信息。
    Turquoise killifish (Nothobranchius furzeri) evolved a naturally short lifespan of about six months and exhibit aging hallmarks that affect multiple organs. These hallmarks include protein aggregation, telomere shortening, cellular senescence, and systemic inflammation. Turquoise killifish possess the full spectrum of vertebrate-specific innate and adaptive immune system. However, during their recent evolutionary history, they lost subsets of mucosal-specific antibody isoforms that are present in other teleosts. As they age, the immune system of turquoise killifish undergoes dramatic cellular and systemic changes. These changes involve increased inflammation, reduced antibody diversity, an increased prevalence of pathogenic microbes in the intestine, and extensive DNA damage in immune progenitor cell clusters. Collectively, the wide array of age-related changes occurring in turquoise killifish suggest that, despite an evolutionary separation spanning hundreds of millions of years, teleosts and mammals share common features of immune system aging. Hence, the spontaneous aging observed in the killifish immune system offers an excellent opportunity for discovering fundamental and conserved aspects associated with immune system aging across vertebrates. Additionally, the species\' naturally short lifespan of only a few months, along with its experimental accessibility, offers a robust platform for testing interventions to improve age-related dysfunctions in the whole organism and potentially inform the development of immune-based therapies for human aging-related diseases.
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  • 文章类型: Journal Article
    鱼翅的端脑经历外翻,这与大多数其他脊椎动物的逃避非常不同。心室形态发生是建立外翻端脑的关键。因此,在这里,我们使用顶端标记带闭塞1来了解心室形态,在四个硬骨鱼物种的早期端脑发育过程中,telachoroidea的扩展和外翻过程:巨型danio(Devarioaequipinnatus),盲洞穴鱼(墨西哥Astyanaxmexicanus),medaka(Oryziaslatipes),和天堂鱼(Macroposusopercularis)。此外,通过对微管蛋白和钙结合蛋白的免疫组织化学,我们分析了端脑的一般形态,显示嗅球和其他端脑区域在发育2到5天的位置和延伸的变化。我们还分析了异常眼和端脑形态发生对外翻的影响,表明尽管眼睛形态非常异常,但独眼突变体确实会发生外翻。我们讨论了硬骨鱼的端脑心室的形成,以其特有的形状,是外翻期间的一个重要事件。
    The telencephalon of ray-finned fishes undergoes eversion, which is very different to the evagination that occurs in most other vertebrates. Ventricle morphogenesis is key to build an everted telencephalon. Thus, here we use the apical marker zona occludens 1 to understand ventricle morphology, extension of the tela choroidea and the eversion process during early telencephalon development of four teleost species: giant danio (Devario aequipinnatus), blind cavefish (Astyanax mexicanus), medaka (Oryzias latipes), and paradise fish (Macroposus opercularis). In addition, by using immunohistochemistry against tubulin and calcium-binding proteins, we analyze the general morphology of the telencephalon, showing changes in the location and extension of the olfactory bulb and other telencephalic regions from 2 to 5 days of development. We also analyze the impact of abnormal eye and telencephalon morphogenesis on eversion, showing that cyclops mutants do undergo eversion despite very dramatic abnormal eye morphology. We discuss how the formation of the telencephalic ventricle in teleost fish, with its characteristic shape, is a crucial event during eversion.
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  • 文章类型: Journal Article
    基于长期且经常令人沮丧的经验,在世界各地收集了用于分类学和系统发育研究的劣质tape虫(Cestoda),考虑到获取新材料的障碍越来越多,一个简单的,提供易于使用和说明的方法指南(手册)。它主要集中在检查主机的关键步骤,从除弹枝外的多热脊椎动物中收集c虫,即,从射线鳍鱼(Actinopterygii),两栖动物和爬行动物(包括除鸟类以外的所有鼠类的近亲类),并将其固定用于后续的形态学和分子研究。建议应遵循以下方法学要点:(i)理想情况下仅应使用新鲜安乐死的宿主(未预先冷冻)进行寄生虫学检查;(ii)应通过照片记录检查的宿主;必要时还应保存宿主组织以供将来进行基因分型;(iii)应小心地分离,以保持头节完整并在固定之前进行适当清洁;(iv)一小片头菌,同时应将其固定在乙醇中,因为它们的DNA应始终使用热(加热)固定剂;这可以防止不自然的收缩或变形,并确保均匀的固定;(vi)每个样品(小瓶)都应适当标记(每个节食样品都应具有唯一的代码);(vii)应始终保存测序样本的凭证(同源或同源)以进行识别,并存入国际公认的收藏品。希望本指南可以帮助研究人员和学生正确处理有价值的cestodes材料,使其适合可靠的鉴定,包括基因分型和比较解剖学,这是任何后续生态的先决条件,生物地理学,系统发育生命周期或分子研究。
    Based on long-term and often frustrating experiences with the poor quality of tapeworms (Cestoda) collected throughout the world for taxonomic and phylogenetic studies, and considering the increasing obstacles to obtaining new material, a simple, easy-to-use and illustrated methodological guide (manual) is provided. It focusses mainly on key steps in examining hosts, collecting cestodes from poikilothermous vertebrates except elasmobranchs, i.e., from ray-finned fish (Actinopterygii), amphibians and \'reptiles\' (a paraphyletic group comprising all sauropsids except birds), and fixing them for subsequent morphological and molecular study. It is proposed that the following methodological points should be followed: (i) ideally only freshly euthanised hosts (not previously frozen) should be used for parasitological examination; (ii) hosts examined should be documented by photographs; host tissue should also be preserved for future genotyping if necessary; (iii) tapeworms should be detached carefully to keep the scolex intact and properly cleaned before fixation; (iv) a small piece of cestode tissue should be always preserved in molecular grade ethanol for DNA sequencing; (v) tapeworms should be fixed as quickly as possible after collecting them and while they are still alive, always using hot (heated) fixatives; this prevents unnatural contraction or deformation and ensures uniform fixation; (vi) each sample (vial) should be properly labelled (a unique code should be given to every cestode sample); (vii) vouchers of sequenced specimens (hologenophores or paragenophores) should always be preserved for identification, and deposited in internationally recognised collections. It is hoped that this guide helps researchers and students to properly process valuable material of cestodes to make it suitable for reliable identification including genotyping and comparative anatomy, which is a prerequisite for any subsequent ecological, biogeographical, phylogenetic life cycle or molecular study.
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  • 文章类型: Journal Article
    一种巨脲,黄连。inc.在7259m的海底诱饵摄像机的视野下,观察到诱饵被诱饵吸引并在80分钟内表现出正常的觅食行为;有史以来对带有游泳膀胱的鱼类的最深观察。充氧的游泳膀胱在74.4MPa压力下提供的浮力估计为0.164N,在20千焦的理论能源成本下,200倍小于等效脂质浮力的费用。在正常代谢过程中,需要192天才能充满游泳膀胱。在这些深度,氧气是非常不可压缩的,因此上升或下降过程中的体积变化很小。然而,游泳膀胱的功能主要取决于非常低的氧气在游泳膀胱壁上的扩散速率。理论上,游泳囊中的氧气可以维持有氧代谢超过一年,但不太可能用作储备。
    A macrourid, Coryphaenoides yaquinae sp. inc., was observed to be attracted to bait and exhibiting normal foraging behaviour during a period of 80 min within view of a baited video camera on the sea floor at 7259 m - the deepest ever observation of a fish species with a swim bladder. The buoyancy provided by an oxygen-filled swim bladder at 74.4 MPa pressure was estimated to be 0.164 N, at a theoretical energy cost of 20 kJ, 200 times less than the cost of equivalent lipid buoyancy. During normal metabolism, 192 days would be required to fill the swimbladder. At these depths, oxygen is very incompressible, so changes in volume during ascent or descent are small. However, swimbladder function is crucially dependent on a very low rate of diffusion of oxygen across the swimbladder wall. The oxygen in the swimbladder could theoretically sustain aerobic metabolism for over 1 year but is unlikely to be used as a reserve.
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