surface display

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  • 文章类型: Journal Article
    尽管已经做出了许多努力来修饰聚对苯二甲酸乙二醇酯(PET)水解酶以提高PET降解效率,这些酶在接近环境温度下的催化性能仍然是一个挑战。在这里,开发了一种多酶级联系统(PT-EC),并通过组装三种成熟的PETase进行了验证,PETaseEHA,快速PETase,和Z1-PETase,分别,与羧酸酯酶TfCa一起,和使用支架蛋白的疏水结合模块CBM3a。由此产生的PT-ECEHA,PT-ECFPE,PT-ECZPE均表现出优异的PET降解功效。值得注意的是,与PETaseEHA相比,PT-ECEHA的产品释放量增加了16.5倍,PT-ECZPE产生的产品数量最高。随后,PT-EC显示在大肠杆菌的表面,分别,并研究了它们对三种PET类型的降解效率。与表面显示的PETaseEHA相比,显示的PT-ECEHA在PET膜的降解效率上提高了20倍。值得注意的是,在一个星期的降解期间,观察到显示的PT-ECZPE的产品释放几乎线性增加,7天后达到11.56±0.64mM。使用基于对接的虚拟筛选策略进化的TfCaI69W/L281Y显示PET降解的产物释放进一步增加2.5倍。总的来说,PT-EC的这些优点证明了多酶级联系统用于PET生物循环的潜力。
    Although many efforts have been devoted to the modification of polyethylene terephthalate (PET) hydrolases for improving the efficiency of PET degradation, the catalytic performance of these enzymes at near-ambient temperatures remains a challenge. Herein, a multi-enzyme cascade system (PT-EC) was developed and validated by assembling three well-developed PETases, PETaseEHA, Fast-PETase, and Z1-PETase, respectively, together with carboxylesterase TfCa, and hydrophobic binding module CBM3a using scaffold proteins. The resulting PT-ECEHA, PT-ECFPE, PT-ECZPE all demonstrated outstanding PET degradation efficacy. Notably, PT-ECEHA exhibited a 16.5-fold increase in product release compared to PETaseEHA, and PT-ECZPE yielded the highest amount of product. Subsequently, PT-ECs were displayed on the surface of Escherichia coli, respectively, and their degradation efficiency toward three PET types was investigated. The displayed PT-ECEHA exhibited a 20-fold increase in degradation efficiency with PET film compared to the surface-displayed PETaseEHA. Remarkably, an almost linear increase in product release was observed for the displayed PT-ECZPE over a one-week degradation period, reaching 11.56 ± 0.64 mM after 7 days. TfCaI69W/L281Y evolved using a docking-based virtual screening strategy showed a further 2.5-fold increase in the product release of PET degradation. Collectively, these advantages of PT-EC demonstrated the potential of a multi-enzyme cascade system for PET bio-cycling.
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  • 文章类型: Journal Article
    弓形虫具有重要的治疗潜力;然而,其非特异性侵袭性导致脱靶效应。这项研究的目的是评估弓形虫特异性是否可以通过表面展示针对树突状细胞的scFv来提高,DEC205和免疫检查点PD-L1。抗DEC205scFv直接经由糖基磷脂酰肌醇(GPI)或通过与SAG1蛋白融合而锚定至弓形虫表面。两个构建体都成功表达,但是结合结果表明,抗DEC-SAG1scFv对重组DEC蛋白和表达DEC205的MutuDC细胞具有更可靠的功能。开发了两种在HA标签的定位上不同的抗PD-L1scFv构建体。两种结构都得到了充分表达,但是HA标签的定位决定了与PD-L1蛋白结合的功能。显示抗PD-L1scFv的弓形虫与表达/显示不同水平的PD-L1的肿瘤细胞的共孵育显示强结合,这取决于可用生物标志物的水平。中和测定证实,结合是由于抗PD-L1scFv与其配体之间的特异性相互作用。混合细胞试验表明,表达抗PD-L1scFv的弓形虫主要靶向PD-L1阳性细胞,具有可忽略的脱靶结合。与亲本菌株相比,重组RH-PD-L1-C菌株对PD-L1肿瘤细胞系的杀伤能力增加。此外,靶肿瘤细胞和效应CD8+T细胞共培养试验表明,我们的模型可以抑制PD1/PD-L1相互作用并增强T细胞免疫应答.这些发现强调了抗体片段的表面展示作为靶向复制性弓形虫菌株同时最小化非特异性结合的有希望的策略。
    Toxoplasma gondii holds significant therapeutic potential; however, its nonspecific invasiveness results in off-target effects. The purpose of this study is to evaluate whether T. gondii specificity can be improved by surface display of scFv directed against dendritic cells\' endocytic receptor, DEC205, and immune checkpoint PD-L1. Anti-DEC205 scFv was anchored to the T. gondii surface either directly via glycosylphosphatidylinositol (GPI) or by fusion with the SAG1 protein. Both constructs were successfully expressed, but the binding results suggested that the anti-DEC-SAG1 scFv had more reliable functionality towards recombinant DEC protein and DEC205-expressing MutuDC cells. Two anti-PD-L1 scFv constructs were developed that differed in the localization of the HA tag. Both constructs were adequately expressed, but the localization of the HA tag determined the functionality by binding to PD-L1 protein. Co-incubation of T. gondii displaying anti-PD-L1 scFv with tumor cells expressing/displaying different levels of PD-L1 showed strong binding depending on the level of available biomarker. Neutralization assays confirmed that binding was due to the specific interaction between anti-PD-L1 scFv and its ligand. A mixed-cell assay showed that T. gondii expressing anti-PD-L1 scFv predominately targets the PD-L1-positive cells, with negligible off-target binding. The recombinant RH-PD-L1-C strain showed increased killing ability on PD-L1+ tumor cell lines compared to the parental strain. Moreover, a co-culture assay of target tumor cells and effector CD8+ T cells showed that our model could inhibit PD1/PD-L1 interaction and potentiate T-cell immune response. These findings highlight surface display of antibody fragments as a promising strategy of targeting replicative T. gondii strains while minimizing nonspecific binding.
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  • 文章类型: Journal Article
    通过微生物燃料电池(MFC)进行化学-电转化的生物-材料混合方法在应对全球能源和环境挑战方面引起了广泛关注。然而,由于复杂的制造过程和有限的生物相容性,这些系统的效率仍然不令人满意。为了克服这些挑战,在这里,我们开发了一种简单的生物-无机杂化系统,用于在希瓦氏菌中产生生物电(S.oneidensis)MR-1。设计了一种生物相容性表面显示方法,银结合肽AgBP2在细胞表面表达。值得注意的是,工程希瓦氏菌对Ag+有较高的电化学敏感性,即使在10μMAg+的低浓度下,功率密度也能提高60%。进一步分析显示细胞表面负电荷强度显著上调,ATP代谢,和减少工程的S.oneidenis-Ag纳米颗粒生物杂化物中的当量(NADH/NAD)比率。这项工作不仅为电化学生物传感器检测金属离子提供了新的见解,而且还通过将相容的生物材料与电转换细菌相结合,提供了一种替代的生物相容性表面展示方法,以促进生物混合MFC的发展。
    The biology-material hybrid method for chemical-electricity conversion via microbial fuel cells (MFCs) has garnered significant attention in addressing global energy and environmental challenges. However, the efficiency of these systems remains unsatisfactory due to the complex manufacturing process and limited biocompatibility. To overcome these challenges, here, we developed a simple bio-inorganic hybrid system for bioelectricity generation in Shewanella oneidensis (S. oneidensis) MR-1. A biocompatible surface display approach was designed, and silver-binding peptide AgBP2 was expressed on the cell surface. Notably, the engineered Shewanella showed a higher electrochemical sensitivity to Ag+, and a 60 % increase in power density was achieved even at a low concentration of 10 μM Ag+. Further analysis revealed significant upregulations of cell surface negative charge intensity, ATP metabolism, and reducing equivalent (NADH/NAD+) ratio in the engineered S. oneidensis-Ag nanoparticles biohybrid. This work not only provides a novel insight for electrochemical biosensors to detect metal ions, but also offers an alternative biocompatible surface display approach by combining compatible biomaterials with electricity-converting bacteria for advancements in biohybrid MFCs.
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  • 文章类型: Journal Article
    重金属抗性机制和重金属响应基因是重金属修复中微生物利用的关键。这里,已证明牙化棒杆菌对铜具有良好的抗性。然后,研究了对铜胁迫的转录组反应,并确定了与牙鱼铜抗性有关的重要通路和基因。根据转录组分析结果,共选择了9个与金属离子转运相关的显著上调的DEGs进行进一步研究.其中,GY20_RS0100790和GY20_RS0110535属于转录因子,GY20_RS0110270、GY20_RS0100790和GY20_RS0110545属于铜结合肽。研究了这两种转录因子的调节基因表达功能。将三种铜结合肽展示在牙本质梭菌表面上用于铜吸附测试。此外,删除了9个相关的金属离子转运基因,以研究铜胁迫对生长的影响。本研究为牙鱼在铜生物修复中的应用提供了依据。
    Heavy metal resistance mechanisms and heavy metal response genes are crucial for microbial utilization in heavy metal remediation. Here, Corynebacterium crenatum was proven to possess good tolerance in resistance to copper. Then, the transcriptomic responses to copper stress were investigated, and the vital pathways and genes involved in copper resistance of C. crenatum were determined. Based on transcriptome analysis results, a total of nine significantly upregulated DEGs related to metal ion transport were selected for further study. Among them, GY20_RS0100790 and GY20_RS0110535 belong to transcription factors, and GY20_RS0110270, GY20_RS0100790, and GY20_RS0110545 belong to copper-binding peptides. The two transcription factors were studied for the function of regulatory gene expression. The three copper-binding peptides were displayed on the C. crenatum surface for a copper adsorption test. Furthermore, the nine related metal ion transport genes were deleted to investigate the effect on growth in copper stress. This investigation provided the basis for utilizing C. crenatum in copper bioremediation.
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  • 文章类型: Journal Article
    使用植物乳杆菌作为食品级载体来创建非GMO全细胞生物催化剂越来越受欢迎。这项工作评估了壳聚糖酶(CsnA,30kDa)来自枯草芽孢杆菌和甘露聚糖酶(ManB,40kDa),来自植物乳杆菌WCFS1表面的地衣芽孢杆菌,使用衍生自胞外转糖基酶Lp_3014的单个LysM结构域或衍生自姆尿肽酶Lp_2162的双LysM结构域。ManB和CsnA与Lp_3014或Lp_2162的LysM结构域融合,在大肠杆菌中产生并锚定在植物乳杆菌的细胞表面。通过Western印迹和流式细胞术分析成功证实了重组蛋白在细菌细胞表面的定位。在展示细胞表面上的甘露聚糖酶和壳聚糖酶的最高固定化产量(44-48%)和活性(812和508U/g干细胞重量,分别)是使用Lp_2162的双LysM结构域作为锚点时获得的。通过高效阴离子交换色谱法测定含有适当底物和ManB或CsnA展示细胞的反应混合物中甘露寡糖或壳寡糖的存在。这项研究表明,非GMO乳杆菌壳聚糖酶和甘露聚糖酶展示细胞可用于产生潜在的益生元寡糖。
    Using Lactiplantibacillus plantarum as a food-grade carrier to create non-GMO whole-cell biocatalysts is gaining popularity. This work evaluates the immobilization yield of a chitosanase (CsnA, 30 kDa) from Bacillus subtilis and a mannanase (ManB, 40 kDa) from B. licheniformis on the surface of L. plantarum WCFS1 using either a single LysM domain derived from the extracellular transglycosylase Lp_3014 or a double LysM domain derived from the muropeptidase Lp_2162. ManB and CsnA were fused with the LysM domains of Lp_3014 or Lp_2162, produced in Escherichia coli and anchored to the cell surface of L. plantarum. The localization of the recombinant proteins on the bacterial cell surface was successfully confirmed by Western blot and flow cytometry analysis. The highest immobilization yields (44-48%) and activities of mannanase and chitosanase on the displaying cell surface (812 and 508 U/g of dry cell weight, respectively) were obtained when using the double LysM domain of Lp_2162 as an anchor. The presence of manno-oligosaccharides or chito-oligosaccharides in the reaction mixtures containing appropriate substrates and ManB or CsnA-displaying cells was determined by high-performance anion exchange chromatography. This study indicated that non-GMO Lactiplantibacillus chitosanase- and mannanase-displaying cells could be used to produce potentially prebiotic oligosaccharides.
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  • 文章类型: Journal Article
    背景:快速生长的聚对苯二甲酸乙二醇酯(PET)废物的积累对环境和人类健康构成了许多威胁。PET的酶降解是PET废物处理的一种有前途的方法。目前,各种PET生物降解系统的效率需要进一步改进。
    结果:在这项工作中,我们设计了全细胞系统,具有强粘附蛋白和最活跃的PETase在大肠杆菌细胞中的PET生物降解的共同展示。cp52k和mfp-3的粘附蛋白和Fast-PETase同时显示在大肠杆菌细胞表面,与没有粘附蛋白的细胞相比,显示mfp-3的细胞的粘附能力提高了50%。因此,共展示mfp-3和Fast-PETase的大肠杆菌细胞对无定形PET的降解率在24小时内超过15%,表现出快速和彻底的PET降解。
    结论:通过在大肠杆菌细胞中设计共展示系统,与仅展示Fast-PETase和游离酶的大肠杆菌细胞相比,PET降解效率显著增加。这种可行的大肠杆菌共展示系统可以用作扩展PET生物降解的处理选择的便利工具。
    BACKGROUND: The accumulation of fast-growing polyethylene terephthalate (PET) wastes has posed numerous threats to the environments and human health. Enzymatic degradation of PET is a promising approach for PET waste treatment. Currently, the efficiency of various PET biodegradation systems requires further improvements.
    RESULTS: In this work, we engineered whole cell systems with co-display of strong adhesive proteins and the most active PETase for PET biodegradation in E. coli cells. Adhesive proteins of cp52k and mfp-3 and Fast-PETase were simultaneously displayed on the surfaces of E. coli cells, and the resulting cells displaying mfp-3 showed 50% increase of adhesion ability compared to those without adhesive proteins. Consequently, the degradation rate of E. coli cells co-displaying mfp-3 and Fast-PETase for amorphous PET exceeded 15% within 24 h, exhibiting fast and thorough PET degradation.
    CONCLUSIONS: Through the engineering of co-display systems in E. coli cells, PET degradation efficiency was significantly increased compared to E. coli cells with sole display of Fast-PETase and free enzyme. This feasible E. coli co-display system could be served as a convenient tool for extending the treatment options for PET biodegradation.
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  • 文章类型: Journal Article
    细菌顺式环氧琥珀酸水解酶(CESH)是对映体酒石酸工业生产中使用的胞内酶。由于纯化的CESH的低稳定性,酶主要用作全细胞催化剂。然而,低细胞渗透性是全细胞催化剂的主要缺点。为了克服这个问题,我们为产生L()-酒石酸的CESH[L]使用各种表面显示系统开发了全细胞催化剂。考虑到显示效率取决于承运人和乘客,我们在大肠杆菌中筛选了五个不同的锚定基序。显示效率在这五个系统中显著不同,并且InaPbN-CESH[L]系统具有最高的全细胞酶活性。优化了InaPbN-CESH[L]生产的条件,并发现了可以将全细胞活性提高数倍的成熟步骤。优化后,InaPbN-CESH[L]表面展示系统的总活性高于细胞内CESH[L]过表达系统的总裂解物活性,指示非常高的CESH[L]显示电平。此外,全细胞InaPbN-CESH[L]生物催化剂在4°C下表现出良好的储存稳定性和相当大的可重用性。因此,本研究开发了一种高效的全细胞CESH[L]生物催化剂,它解决了细胞渗透性问题,为工业L()-酒石酸生产提供了有价值的系统。
    Bacterial cis-epoxysuccinic acid hydrolases (CESHs) are intracellular enzymes used in the industrial production of enantiomeric tartaric acids. The enzymes are mainly used as whole-cell catalysts because of the low stability of purified CESHs. However, the low cell permeability is the major drawback of the whole-cell catalyst. To overcome this problem, we developed whole-cell catalysts using various surface display systems for CESH[L] which produces L(+)-tartaric acid. Considering that the display efficiency depends on both the carrier and the passenger, we screened five different anchoring motifs in Escherichia coli. Display efficiencies are significantly different among these five systems and the InaPbN-CESH[L] system has the highest whole-cell enzymatic activity. Conditions for InaPbN-CESH[L] production were optimized and a maturation step was discovered which can increase the whole-cell activity several times. After optimization, the total activity of the InaPbN-CESH[L] surface display system is higher than the total lysate activity of an intracellular CESH[L] overexpression system, indicating a very high CESH[L] display level. Furthermore, the whole-cell InaPbN-CESH[L] biocatalyst exhibited good storage stability at 4 °C and considerable reusability. Thereby, an efficient whole-cell CESH[L] biocatalyst was developed in this study, which solves the cell permeability problem and provides a valuable system for industrial L(+)-tartaric acid production.
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  • 文章类型: Journal Article
    从木质纤维素原料生产生物燃料是可持续的和环境友好的。然而,木质纤维素预处理会产生发酵抑制剂,导致多种胁迫和低产量。因此,高抗性微生物的工程建设意义重大。在这项研究中,配备漆酶的复合功能嵌合纤维素体,多才多艺的过氧化物酶,并将裂解多糖单加氧酶铆接在酿酒酵母表面,构建了新型酵母菌株YI/LVP,用于协同木质素降解和纤维素乙醇生产。通过免疫荧光显微镜和流式细胞术测定纤维素体的组装。在整个发酵过程中,工程菌YI/LVP的最大乙醇浓度和纤维素转化率分别达到8.68g/L和83.41%,分别。结果证明了含有木质素降解酶的人造嵌合纤维素体用于纤维素乙醇生产的可用性。目的通过构建和优化基于纤维素体的协同木质素降解酶系统,提高酿酒酵母的抑制剂耐受性和发酵性能。
    Biofuel production from lignocellulose feedstocks is sustainable and environmentally friendly. However, the lignocellulosic pretreatment could produce fermentation inhibitors causing multiple stresses and low yield. Therefore, the engineering construction of highly resistant microorganisms is greatly significant. In this study, a composite functional chimeric cellulosome equipped with laccase, versatile peroxidase, and lytic polysaccharide monooxygenase was riveted on the surface of Saccharomyces cerevisiae to construct a novel yeast strain YI/LVP for synergistic lignin degradation and cellulosic ethanol production. The assembly of cellulosome was assayed by immunofluorescence microscopy and flow cytometry. During the whole process of fermentation, the maximum ethanol concentration and cellulose conversion of engineering strain YI/LVP reached 8.68 g/L and 83.41%, respectively. The results proved the availability of artificial chimeric cellulosome containing lignin-degradation enzymes for cellulosic ethanol production. The purpose of the study was to improve the inhibitor tolerance and fermentation performance of S. cerevisiae through the construction and optimization of a synergistic lignin-degrading enzyme system based on cellulosome.
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  • 文章类型: Journal Article
    杆状病毒在生物医学研究中已广泛用于外源蛋白表达,出芽病毒(BV)表面展示已发展成为异源膜蛋白研究的重要研究工具。表面展示的基本策略是构建重组病毒,其中靶基因与完整或部分gp64基因融合。在这项研究中,我们进一步研究并开发了这种BV表面显示策略。我们构建了稳定的昆虫细胞系,以表达具有信号肽(SP)和GP64跨膜域(TMD)不同区域的目标蛋白。随后,重组BmNPV用于感染细胞,并检测到异质蛋白与BV的整合。结果表明,SP(SPΔn)的n区缺失比全长SP的掺入率降低更多。然而,与全长SP相比,与SP的h和c区缺失融合的蛋白质(SPΔh-c)的掺入率显着提高了35-40倍。此外,没有SP和TMD的外源蛋白不能在BV上显示,与对照相比,外源蛋白与GP64TMD融合在c末端的整合显着增强了12-26倍。因此,这些新策略进一步发展了BV表面显示系统。
    Baculovirus has been widely used for foreign protein expression in biomedical studies, and budded virus (BV) surface display has developed into an important research tool for heterogenous membrane protein studies. The basic strategy of surface display is to construct a recombinant virus where the target gene is fused with a complete or partial gp64 gene. In this study, we further investigate and develop this BV surface displaying strategy. We constructed stable insect cell lines to express the target protein flanking with different regions of signal peptide (SP) and GP64 transmembrane domain (TMD). Subsequently, recombinant BmNPV was used to infect the cell, and the integration of heterogeneous protein into BV was detected. The results indicated that deletion of the n-region of SP (SPΔn) decreased the incorporation rate more than that of the full-length SP. However, the incorporation rate of the protein fused with h and c-region deletion of SP (SPΔh-c) was significantly enhanced by 35-40 times compare to full-length SP. Moreover, the foreign protein without SP and TMD failed to display on the BV, while the integration of foreign proteins with GP64 TMD fusion at the c-terminal was significantly enhanced by 12-26 times compared to the control. Thus, these new strategies developed the BV surface display system further.
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  • 文章类型: Journal Article
    最近的研究报道了RBC在鱼类对病毒感染和DNA疫苗的反应中的重要性。表面展示重组菌苗(spinycterins)是鱼类病毒疫苗接种的安全且适应性强的原型,代表了水产养殖预防的替代方法。据报道可增强鱼类的免疫反应。我们评估了虹鳟鱼(Oncorhynchusmykiss)红细胞(RBC)的先天免疫反应,头肾,和脾表达病毒性出血性败血病病毒(VHSV)的糖蛋白G片段的spinycterins,养殖鲑鱼中最具破坏性的世界性疾病之一。我们首先选择了VHSV糖蛋白G的免疫相关的缩小病毒片段(frg16252-450)。然后,将表达frg16252-450融合到Nvical锚定基序(Nvicalfrg16252-450)的spinycterin与内部表达frg16252-450而没有锚定基序的spinycterin进行比较。Nvicalfrg16252-450棘突蛋白在体外显示出对红细胞的附着增加,并在体外和体内调节红细胞中干扰素和抗原呈递相关基因的表达,静脉注射后。相比之下,注射frg16252-450的鱼的头肾和脾脏,但未注射Ngvicalfrg16252-450,spinycelins显示干扰素和抗原呈递基因上调。静脉内注射Ngomyfrg16252-450刺蝶呤导致红细胞中更高的先天性免疫反应,而frg16252-450刺蝶呤增加了头肾和脾脏中的免疫反应。尽管需要更多的研究来评估使用刺蝶呤作为鱼类病毒疫苗的实用性,这些结果突出了红细胞对鱼类对抗病毒预防的先天免疫应答的重要贡献。
    Recent studies have reported on the importance of RBCs in fish responses to viral infections and DNA vaccines. Surface-displaying recombinant bacterins (spinycterins) are a safe and adaptable prototype for viral vaccination of fish and represent an alternative method of aquaculture prophylaxis, since have been reported to enhance fish immune response. We evaluated the innate immune response of rainbow trout (Oncorhynchus mykiss) red blood cells (RBCs), head kidney, and spleen to spinycterins expressing a fragment of the glycoprotein G of viral haemorrhagic septicemia virus (VHSV), one of the most devastating world-wide diseases in farmed salmonids. We first selected an immunorelevant downsized viral fragment of VHSV glycoprotein G (frg16252-450). Then, spinycterins expressing frg16252-450 fused to Nmistic anchor-motif (Nmistic+frg16252-450) were compared to spinycterins expressing frg16252-450 internally without the anchor motif. Nmistic+frg16252-450 spinycterins showed increased attachment to RBCs in vitro and modulated the expression of interferon- and antigen presentation-related genes in RBCs in vitro and in vivo, after intravenous injection. In contrast, the head kidney and spleen of fish injected with frg16252-450, but not Nmistic+frg16252-450, spinycterins demonstrated upregulation of interferon and antigen-presenting genes. Intravenous injection of Nmistic+frg16252-450 spinycterins resulted in a higher innate immune response in RBCs while frg16252-450 spinycterins increased the immune response in head kidney and spleen. Although more studies are required to evaluate the practicality of using spinycterins as fish viral vaccines, these results highlight the important contribution of RBCs to the fish innate immune response to antiviral prophylactics.
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