optogenetics

光遗传学
  • 文章类型: Journal Article
    尿液在下尿路中的储存和周期性排尿是由包括大脑在内的复杂神经控制系统调节的,脊髓,和外周自主神经节。研究下尿路的神经调节机制有助于加深我们对尿液储存和排尿过程的理解,揭示下尿路功能障碍的潜在机制,并为相关疾病的治疗和管理提供新的策略和见解。然而,目前对下尿路神经调节机制的理解仍然有限,需要进一步的研究方法来阐明其机制和潜在的病理机制。本文就下尿路系统功能研究的研究进展作一综述,以及排尿过程中的关键神经调节机制。此外,讨论了研究下尿路调节机制的常用研究方法和评价啮齿动物下尿路功能的方法。最后,讨论了人工智能在下尿路神经调节机制研究中的最新进展和前景。这包括机器学习在下尿路疾病诊断和智能辅助手术系统中的潜在作用。以及数据挖掘和模式识别技术在推进下尿路研究中的应用。我们的目标是通过深入研究和全面了解下尿路神经调节机制的最新进展,为研究人员提供下尿路功能障碍的治疗和管理的新策略和见解。
    The storage and periodic voiding of urine in the lower urinary tract are regulated by a complex neural control system that includes the brain, spinal cord, and peripheral autonomic ganglia. Investigating the neuromodulation mechanisms of the lower urinary tract helps to deepen our understanding of urine storage and voiding processes, reveal the mechanisms underlying lower urinary tract dysfunction, and provide new strategies and insights for the treatment and management of related diseases. However, the current understanding of the neuromodulation mechanisms of the lower urinary tract is still limited, and further research methods are needed to elucidate its mechanisms and potential pathological mechanisms. This article provides an overview of the research progress in the functional study of the lower urinary tract system, as well as the key neural regulatory mechanisms during the micturition process. In addition, the commonly used research methods for studying the regulatory mechanisms of the lower urinary tract and the methods for evaluating lower urinary tract function in rodents are discussed. Finally, the latest advances and prospects of artificial intelligence in the research of neuromodulation mechanisms of the lower urinary tract are discussed. This includes the potential roles of machine learning in the diagnosis of lower urinary tract diseases and intelligent-assisted surgical systems, as well as the application of data mining and pattern recognition techniques in advancing lower urinary tract research. Our aim is to provide researchers with novel strategies and insights for the treatment and management of lower urinary tract dysfunction by conducting in-depth research and gaining a comprehensive understanding of the latest advancements in the neural regulation mechanisms of the lower urinary tract.
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  • 文章类型: Journal Article
    机械敏感的PIEZO2离子通道在触摸中发挥作用,本体感受,和炎性疼痛。目前,没有小分子抑制剂可以选择性抑制PIEZO2而不是PIEZO1。显示TMEM120A蛋白抑制PIEZO2,同时使PIEZO1不受影响。在这里,我们发现TMEM120A的表达提高了磷脂酸和溶血磷脂酸(LPA)的细胞水平,与脂质修饰酶的结构相似。磷脂酸或LPA的细胞内应用抑制PIEZO2而不抑制PIEZO1活性。细胞外暴露于不可水解磷脂酸和LPA类似物碳环磷脂酸(ccPA)也抑制PIEZO2。磷脂酶D(PLD)的光遗传学激活,一种产生磷脂酸的信号酶,抑制PIEZO2但不抑制PIEZO1。相反,在行为实验中,抑制PLD导致小鼠的PIEZO2活性增加和机械敏感性增加。这些发现揭示了选择性靶向PIEZO2而不是PIEZO1的脂质调节剂,并将PLD途径鉴定为PIEZO2活性的调节剂。
    Mechanosensitive PIEZO2 ion channels play roles in touch, proprioception, and inflammatory pain. Currently, there are no small molecule inhibitors that selectively inhibit PIEZO2 over PIEZO1. The TMEM120A protein was shown to inhibit PIEZO2 while leaving PIEZO1 unaffected. Here we find that TMEM120A expression elevates cellular levels of phosphatidic acid and lysophosphatidic acid (LPA), aligning with its structural resemblance to lipid-modifying enzymes. Intracellular application of phosphatidic acid or LPA inhibits PIEZO2 but not PIEZO1 activity. Extended extracellular exposure to the non-hydrolyzable phosphatidic acid and LPA analog carbocyclic phosphatidic acid (ccPA) also inhibits PIEZO2. Optogenetic activation of phospholipase D (PLD), a signaling enzyme that generates phosphatidic acid, inhibits PIEZO2 but not PIEZO1. Conversely, inhibiting PLD leads to increased PIEZO2 activity and increased mechanical sensitivity in mice in behavioral experiments. These findings unveil lipid regulators that selectively target PIEZO2 over PIEZO1, and identify the PLD pathway as a regulator of PIEZO2 activity.
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  • 文章类型: Journal Article
    溶酶体是细胞内必不可少的降解细胞器和信号枢纽,在巨自噬/自噬的调节中起着至关重要的作用。溶酶体功能异常和自噬受损与多种神经退行性疾病的发生发展密切相关。增强溶酶体活性和提高自噬水平有望成为治疗这些疾病的有效策略。然而,仍然缺乏动态调节活细胞或动物中溶酶体活性和自噬水平的方法.在我们最近的工作中,我们应用光遗传学来操纵溶酶体的生理和功能,开发三种溶酶体靶向光遗传学工具:lyso-NpHR3.0,lyso-ArchT,还有lyso-ChR2.这些新的执行器能够对光依赖性调节关键方面,如溶酶体膜电位,内腔pH值,水解酶活性,降解过程,和活细胞中的Ca2+动力学。值得注意的是,lyso-ChR2激活通过MTOR途径诱导自噬,而在阿尔茨海默病细胞模型中通过自噬诱导促进Aβ清除。此外,lyso-ChR2激活可减少Aβ沉积并减轻Aβ诱导的阿尔茨海默病秀丽隐杆线虫模型中的麻痹。我们的溶酶体光遗传学执行器提供了一种动态调节活细胞和动物中溶酶体生理和自噬活性的新方法。
    Lysosomes are essential degradative organelles and signaling hubs within cells, playing a crucial role in the regulation of macroautophagy/autophagy. Dysfunction of lysosomes and impaired autophagy are closely associated with the development of various neurodegenerative diseases. Enhancing lysosomal activity and boosting autophagy levels holds great promise as effective strategies for treating these diseases. However, there remains a lack of methods to dynamically regulate lysosomal activity and autophagy levels in living cells or animals. In our recent work, we applied optogenetics to manipulate lysosomal physiology and function, developing three lysosome-targeted optogenetic tools: lyso-NpHR3.0, lyso-ArchT, and lyso-ChR2. These new actuators enable light-dependent regulation of key aspects such as lysosomal membrane potential, lumenal pH, hydrolase activity, degradation processes, and Ca2+ dynamics in living cells. Notably, lyso-ChR2 activation induces autophagy via the MTOR pathway while it promotes Aβ clearance through autophagy induction in cellular models of Alzheimer disease. Furthermore, lyso-ChR2 activation reduces Aβ deposition and alleviates Aβ-induced paralysis in Caenorhabditis elegans models of Alzheimer disease. Our lysosomal optogenetic actuators offer a novel method for dynamically regulating lysosomal physiology and autophagic activity in living cells and animals.
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  • 文章类型: Journal Article
    由于合成生物学的发展,基于工程化细菌的癌症治疗越来越被认为是一种有前途的治疗策略。其中,工程化细菌介导的光动力疗法(PDT)-免疫疗法在治疗效率方面比单一疗法显示出更大的优势和潜力.然而,光敏剂(PS)的不可持续再生和弱免疫应答限制了治疗效率。在这里,我们开发了一种工程化的基于细菌的递送系统,用于在癌症PDT免疫疗法中连续递送PSs和检查点抑制剂.将5-氨基乙酰丙酸(5-ALA)的生物合成途径导入大肠杆菌,生长10小时后产生172.19mg/L的上清液浓度。另一种菌株具有抗程序性细胞死亡配体1纳米抗体(抗PD-L1)的光可控释放。该系统表现出协同作用,PDT引发肿瘤细胞死亡,释放的肿瘤细胞片段刺激免疫,然后消除残留的肿瘤细胞。抑瘤率达到74.97%,活化的T细胞和炎症细胞因子部分得到加强。结果表明,工程化的基于细菌的协作系统可以依次递送治疗物质和检查点抑制剂,达到良好的治疗效果。本文将为肿瘤PDT-免疫治疗提供新的视角。
    Engineered bacteria-based cancer therapy has increasingly been considered to be a promising therapeutic strategy due to the development of synthetic biology. Wherein, engineering bacteria-mediated photodynamic therapy (PDT)-immunotherapy shows greater advantages and potential in treatment efficiency than monotherapy. However, the unsustainable regeneration of photosensitizers (PSs) and weak immune responses limit the therapeutic efficiency. Herein, we developed an engineered bacteria-based delivery system for sequential delivery of PSs and checkpoint inhibitors in cancer PDT-immunotherapy. The biosynthetic pathway of 5-aminolevulinic acid (5-ALA) was introduced into Escherichia coli, yielding a supernatant concentration of 172.19 mg/L after 10 h of growth. And another strain was endowed with the light-controllable releasement of anti-programmed cell death-ligand 1 nanobodies (anti-PD-L1). This system exhibited a collaborative effect, where PDT initiated tumor cell death and the released tumor cell fragments stimulated immunity, followed by the elimination of residual tumor cells. The tumor inhibition rate reached 74.97%, and the portion of activated T cells and inflammatory cytokines were reinforced. The results demonstrated that the engineered bacteria-based collaborative system could sequentially deliver therapeutic substance and checkpoint inhibitors, and achieve good therapeutic therapy. This paper will provide a new perspective for the cancer PDT-immunotherapy.
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  • 文章类型: Journal Article
    癫痫的定义是突然出现有害的癫痫发作,但是这些政权转变的性质仍然是神秘的。从动力系统理论的角度来看,在高度互连的系统中,这种临界转变发生在不明显的扰动上,并且可以建模为替代方案之间的数学分叉。关键过渡的可预测性是一个重大挑战,但是该理论预测了处于不稳定边缘的微妙动力学特征的出现。这种动态特征是否可以在即将发生的缉获之前进行测量仍然不确定。这里,我们验证了对分叉的预测适用于海马癫痫发作的开始,从计算机建模中提供一致的结果,雄性小鼠的光遗传学实验和人类癫痫患者的颅内脑电图记录。利用药理学控制神经兴奋性,我们发现,生理兴奋性和癫痫发作之间的界限可以从海马回路中被动记录或主动探测的动态特征推断出来.对未来神经技术的设计很重要,主动探测超过被动记录来解码潜在的神经兴奋性水平,特别是从传播神经反应的网络进行评估时。我们的发现为预测和预防癫痫发作提供了一种有希望的方法,基于对他们动态的良好理解。
    Epilepsy is defined by the abrupt emergence of harmful seizures, but the nature of these regime shifts remains enigmatic. From the perspective of dynamical systems theory, such critical transitions occur upon inconspicuous perturbations in highly interconnected systems and can be modeled as mathematical bifurcations between alternative regimes. The predictability of critical transitions represents a major challenge, but the theory predicts the appearance of subtle dynamical signatures on the verge of instability. Whether such dynamical signatures can be measured before impending seizures remains uncertain. Here, we verified that predictions on bifurcations applied to the onset of hippocampal seizures, providing concordant results from in silico modeling, optogenetics experiments in male mice and intracranial EEG recordings in human patients with epilepsy. Leveraging pharmacological control over neural excitability, we showed that the boundary between physiological excitability and seizures can be inferred from dynamical signatures passively recorded or actively probed in hippocampal circuits. Of importance for the design of future neurotechnologies, active probing surpassed passive recording to decode underlying levels of neural excitability, notably when assessed from a network of propagating neural responses. Our findings provide a promising approach for predicting and preventing seizures, based on a sound understanding of their dynamics.
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  • 文章类型: Journal Article
    巨噬细胞测量“吃我”信号免疫球蛋白G(IgG)以识别吞噬作用的靶标。我们测试了先前与IgG的接触是否会影响巨噬细胞的食欲。IgG被Fc受体识别。为了在时间上控制Fc受体激活,我们设计了一种Fc受体,该受体被光诱导的Cry2寡聚化激活,触发吞噬作用。使用这个工具,我们证明亚阈值Fc受体激活使小鼠骨髓源性巨噬细胞在未来遭遇时对IgG更敏感.先前经历过阈值下Fc受体激活的巨噬细胞吞噬更多的IgG结合的人癌细胞。吞噬作用的增加通过两种独立的机制-短期和长期启动发生。长期启动需要新的蛋白质合成和Erk活性。短期引发不需要新的蛋白质合成,并且与Fc受体迀移率的增加相关。我们的工作表明,IgG启动巨噬细胞增加吞噬作用,这表明治疗性抗体在初始启动剂量后可能会变得更有效。
    Macrophages measure the \"eat-me\" signal immunoglobulin G (IgG) to identify targets for phagocytosis. We tested whether prior encounters with IgG influence macrophage appetite. IgG is recognized by the Fc receptor. To temporally control Fc receptor activation, we engineered an Fc receptor that is activated by the light-induced oligomerization of Cry2, triggering phagocytosis. Using this tool, we demonstrate that subthreshold Fc receptor activation primes mouse bone-marrow-derived macrophages to be more sensitive to IgG in future encounters. Macrophages that have previously experienced subthreshold Fc receptor activation eat more IgG-bound human cancer cells. Increased phagocytosis occurs by two discrete mechanisms-a short- and long-term priming. Long-term priming requires new protein synthesis and Erk activity. Short-term priming does not require new protein synthesis and correlates with an increase in Fc receptor mobility. Our work demonstrates that IgG primes macrophages for increased phagocytosis, suggesting that therapeutic antibodies may become more effective after initial priming doses.
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  • 文章类型: Journal Article
    荧光和非荧光神经束示踪剂能够研究实验动物的外周和中枢神经系统中的神经通路,展示具有高分辨率和高解剖精度的图像。顺行和逆行病毒示踪剂是用于神经解剖学标测的重要尖端工具。光遗传学由体内神经束追踪程序的先进替代方案组成,从根本上考虑在实验动物中解剖和调节刺激或抑制神经回路的通路的可能性。通过体内扩散张量成像的神经束造影能够以合理的准确性研究人类的神经通路。在这里,我们描述了在animavili中进行的经典解剖神经束追踪和现代光遗传学技术的过程,以及在animanobili中进行的不同的扩散张量神经束造影。
    Fluorescent and non-fluorescent neural tract tracers enable the investigation of neural pathways in both peripheral and central nervous systems in laboratory animals demonstrating images with high resolution and great anatomic precision. Anterograde and retrograde viral tracers are important cutting-edge tools for neuroanatomical mapping. The optogenetic consists of an advanced alternative for in vivo neural tract tracing procedures, fundamentally considering the possibility to dissect and modulate pathways either exciting or inhibiting neural circuits in laboratory animals. The neurotractography by diffusion tensor imaging in vivo procedures enables the study of neural pathways in humans with reasonable accuracy. Here we describe the procedure of classical anatomic neural tract tracing and modern optogenetic technique performed in anima vili in addition to different diffusion tensor neurotractography performed in anima nobili.
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  • 文章类型: Journal Article
    巴甫洛夫恐惧条件研究表明,背侧导水管周围灰色(dPAG)和基底外侧杏仁核(BLA)之间的相互作用在联想恐惧记忆的形成中起着预测误差机制的作用。然而,他们在应对自然主义掠夺性威胁方面的作用,其特点是不太明确的提示和没有重复的试错学习事件,仍未探索。在这项研究中,我们在“接近食物-避免捕食者”任务中对大鼠进行了单单元记录,专注于dPAG和BLA神经元对快速接近的机器人捕食者的反应。dPAG的光遗传刺激触发了幼稚大鼠的逃跑行为和增加的BLA活性。值得注意的是,dPAG刺激激活的BLA神经元显示对机器人的即时反应,与对dPAG刺激无反应的BLA神经元相比,显示同步活动增强。此外,在dPAG和BLA中使用顺行和逆行示踪剂注射,分别,加上c-Fos激活以应对掠夺性威胁,表明中线丘脑可能在先天的反掠夺性防御功能中起中介作用。
    Pavlovian fear conditioning research suggests that the interaction between the dorsal periaqueductal gray (dPAG) and basolateral amygdala (BLA) acts as a prediction error mechanism in the formation of associative fear memories. However, their roles in responding to naturalistic predatory threats, characterized by less explicit cues and the absence of reiterative trial-and-error learning events, remain unexplored. In this study, we conducted single-unit recordings in rats during an \'approach food-avoid predator\' task, focusing on the responsiveness of dPAG and BLA neurons to a rapidly approaching robot predator. Optogenetic stimulation of the dPAG triggered fleeing behaviors and increased BLA activity in naive rats. Notably, BLA neurons activated by dPAG stimulation displayed immediate responses to the robot, demonstrating heightened synchronous activity compared to BLA neurons that did not respond to dPAG stimulation. Additionally, the use of anterograde and retrograde tracer injections into the dPAG and BLA, respectively, coupled with c-Fos activation in response to predatory threats, indicates that the midline thalamus may play an intermediary role in innate antipredatory-defensive functioning.
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  • 文章类型: Journal Article
    在过去的几十年中,神经科学和神经工程界之间的不断交流已经发现了许多与大脑接口的技术解决方案。在这个框架中,一个引人入胜的方法依赖于在同一植入式神经探针中整合多种激活和监测功能,以更好地研究脑深部区域神经信号和相关功能的多面性。我们强调了当前的挑战和技术发展的观点,这些技术发展可能使基于光纤的非平面植入式神经光子学探针的多个功能集成成为可能。
    The continuous exchange between the neuroscience and neuroengineering communities that took place over the past decades has uncovered a multitude of technological solutions to interface with the brain. In this framework, a fascinating approach relies on the integration of multiple activation and monitoring capabilities in the same implantable neural probe to better study the multifaceted nature of neural signaling and related functions in the deep brain regions. We highlight current challenges and perspectives on technological developments that could potentially enable the integration of multiple functionalities on optical fiber-based non-planar implantable neurophotonics probes.
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  • 文章类型: Journal Article
    蓝光照明可以通过光氧电压(LOV)光敏蛋白检测,并转化为一系列生化反应,促进新型光遗传学工具的产生,以控制细胞功能。在这里,我们开发了我们先前描述的VP-EL222光依赖性转录因子的新变体,并将它们用于研究发芽酵母酿酒酵母中的磷酸盐响应信号(PHO)途径,举例说明了这些新工具的实用程序。首先关注VP-EL222蛋白本身,我们将基因表达的可调性量化为光照强度和持续时间的函数,并证明该系统可以容忍添加实质上更大的效应子结构域而不影响功能。我们进一步证明了几种EL222驱动的转录控制器在质粒和基因组环境中的实用性。使用PHO5和PHO84启动子在其天然染色体环境中作为例子。这些研究强调了使用连接到人工转录域或酵母激活蛋白(Pho4)的EL222进行光控基因激活的实用性。同样,我们证明了与酵母Ume6蛋白融合的EL222光遗传学抑制基因表达的能力。我们最终研究了将EL222招募位点移动到PHO5和PHO84启动子内不同位置的影响,以及确定如何将这种人工光控调节与取决于无机磷酸盐(Pi)可用性的天然控制相结合。一起来看,我们的工作扩展了这些多功能光遗传学工具在它们可以提供的功能类型和可以探索的生物学问题方面的适用性。
    Blue light illumination can be detected by Light-Oxygen-Voltage (LOV) photosensing proteins and translated into a range of biochemical responses, facilitating the generation of novel optogenetic tools to control cellular function. Here we develop new variants of our previously described VP-EL222 light-dependent transcription factor and apply them to study the phosphate-responsive signaling (PHO) pathway in the budding yeast Saccharomyces cerevisiae, exemplifying the utilities of these new tools. Focusing first on the VP-EL222 protein itself, we quantified the tunability of gene expression as a function of light intensity and duration, and demonstrated that this system can tolerate the addition of substantially larger effector domains without impacting function. We further demonstrated the utility of several EL222-driven transcriptional controllers in both plasmid and genomic settings, using the PHO5 and PHO84 promoters in their native chromosomal contexts as examples. These studies highlight the utility of light-controlled gene activation using EL222 tethered to either artificial transcription domains or yeast activator proteins (Pho4). Similarly, we demonstrate the ability to optogenetically repress gene expression with EL222 fused to the yeast Ume6 protein. We finally investigated the effects of moving EL222 recruitment sites to different locations within the PHO5 and PHO84 promoters, as well as determining how this artificial light-controlled regulation could be integrated with the native controls dependent on inorganic phosphate (Pi) availability. Taken together, our work expands the applicability of these versatile optogenetic tools in the types of functionality they can deliver and biological questions that can be probed.
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