non-photosynthetic

  • 文章类型: Journal Article
    我们最近的研究表明,铁氧还蛋白(Fd)和铁氧还蛋白NADP还原酶(FNR)的亚型在薄荷腺毛中萜类生物合成的2C-甲基-D-赤藓糖醇4-磷酸(MEP)途径的还原步骤中起着至关重要的作用(GT)。基于对几个转录组数据集的分析,我们证明了叶型FNR(L-FNR)的转录本的存在,叶型Fd(FdI),根型FNR(R-FNR),和薄荷科(唇形科)的几个成员中的两个根型Fds(FdII和FdIII)。本研究报告了薄荷(Mentha×piperitaL.)的所有Fd和FNR亚型的生化特征。使用光还原方法测定Fd和FNR同工型的氧化还原电位。根据心肌黄递酶测定,薄荷R-FNR对NADPH的特异性常数(kcat/Km)明显高于L-FNR。使用铁氰化物作为电子受体获得了类似的结果。当测定NADPH-细胞色素C还原酶活性时,FdII和FdIII同种型的特异性常数(与FdI相比)对于L-FNR略高,对于R-FNR则明显更高。基于代表各种薄荷器官和细胞类型的样品的实时定量PCR测定,FdII基因在代谢活跃的GTs中高度表达(但在根中也存在较低水平),而FdIII在根和GTs中均以低水平表达。我们的数据提供了证据表明FdII的高转录水平,与FdIII相比,编码酶的生化特性没有差异,可能支持薄荷GTs中通过MEP途径形成大量单萜。这项工作为进一步研究独特的R-FNR-FdII对在唇形科非光合GTs中的作用奠定了基础。
    Our recent investigations indicated that isoforms of ferredoxin (Fd) and ferredoxin NADP+ reductase (FNR) play essential roles for the reductive steps of the 2C-methyl-D-erythritol 4-phosphate (MEP) pathway of terpenoid biosynthesis in peppermint glandular trichomes (GTs). Based on an analysis of several transcriptome data sets, we demonstrated the presence of transcripts for a leaf-type FNR (L-FNR), a leaf-type Fd (Fd I), a root-type FNR (R-FNR), and two root-type Fds (Fd II and Fd III) in several members of the mint family (Lamiaceae). The present study reports on the biochemical characterization of all Fd and FNR isoforms of peppermint (Mentha × piperita L.). The redox potentials of Fd and FNR isoforms were determined using photoreduction methods. Based on a diaphorase assay, peppermint R-FNR had a substantially higher specificity constant (kcat/Km) for NADPH than L-FNR. Similar results were obtained with ferricyanide as an electron acceptor. When assayed for NADPH-cytochrome c reductase activity, the specificity constant with the Fd II and Fd III isoforms (when compared to Fd I) was slightly higher for L-FNR and substantially higher for R-FNR. Based on real-time quantitative PCR assays with samples representing various peppermint organs and cell types, the Fd II gene was expressed very highly in metabolically active GTs (but also present at lower levels in roots), whereas Fd III was expressed at low levels in both roots and GTs. Our data provide evidence that high transcript levels of Fd II, and not differences in the biochemical properties of the encoded enzyme when compared to those of Fd III, are likely to support the formation of copious amounts of monoterpene via the MEP pathway in peppermint GTs. This work has laid the foundation for follow-up studies to further investigate the roles of a unique R-FNR-Fd II pair in non-photosynthetic GTs of the Lamiaceae.
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  • 文章类型: Journal Article
    非光合微生物的代谢工程以增加CO2的利用已被关注作为将CO2转化为有价值的产物如脂肪酸的绿色策略。在这项研究中,形成了涉及碳酸酐酶和生物素羧化酶的CO2利用途径,以在含油酵母Yarrowialipolytica中回收CO2,从而增加脂肪酸的产量。在引入CO2利用途径的重组菌株中,脂肪酸产量为10.7g/L,比野生型菌株高1.5倍。与野生型菌株相比,所得菌株的干细胞质量增加1.4倍。此外,亚油酸在最终菌株的脂肪酸组成中为47.7%,与野生型菌株相比增加了11.6%。这些结果可以作为通过直接利用CO2开发高效和环保工艺的基本技术。
    Metabolic engineering of non-photosynthetic microorganisms to increase the utilization of CO2 has been focused on as a green strategy to convert CO2 into valuable products such as fatty acids. In this study, a CO2 utilization pathway involving carbonic anhydrase and biotin carboxylase was formed to recycle CO2 in the oleaginous yeast Yarrowia lipolytica, thereby increasing the production of fatty acids. In the recombinant strain in which the CO2 utilization pathway was introduced, the production of fatty acids was 10.7 g/L, which was 1.5-fold higher than that of the wild-type strain. The resulting strain had a 1.4-fold increase in dry cell mass compared to the wild-type strain. In addition, linoleic acid was 47.7% in the fatty acid composition of the final strain, which was increased by 11.6% compared to the wild-type strain. These results can be applied as an essential technology for developing efficient and eco-friendly processes by directly utilizing CO2.
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  • 文章类型: Journal Article
    叶绿素植物是完全的异养植物,没有叶绿素,它们从土壤真菌中获得养分。天麻是多年生的,绿叶兰花表现出适应非光合生活方式的独特进化策略。在这项研究中,G.elata的基因组组装为1.12Gb,重叠群N50大小为110kb,支架N50大小为1.64Mb,因此它有助于揭示这些适应性变化的遗传基础。根据基因组数据,与光合作用相关的关键基因,叶片发育,在进化过程中,发现质体分裂途径丢失或处于放松的选择状态。因此,G.elata的基因组序列为将来研究兰花和其他有氯植物的进化提供了很好的资源。
    Achlorophyllous plants are full mycoheterotrophic plants with no chlorophyll and they obtain their nutrients from soil fungi. Gastrodia elata is a perennial, achlorophyllous orchid that displays distinctive evolutionary strategy of adaptation to the non-photosynthetic lifestyle. Here in this study, the genome of G. elata was assembled to 1.12 Gb with a contig N50 size of 110 kb and a scaffold N50 size of 1.64 Mb so that it helped unveil the genetic basics of those adaptive changes. Based on the genomic data, key genes related to photosynthesis, leaf development, and plastid division pathways were found to be lost or under relaxed selection during the course of evolution. Thus, the genome sequence of G. elata provides a good resource for future investigations of the evolution of orchids and other achlorophyllous plants.
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