ligand binding assay

配体结合测定
  • 文章类型: Journal Article
    化学传感系统在昆虫的生长和发育中至关重要。Oriussauteri(Poppius)(半翅目:Anthocoridae)是许多害虫的重要天敌。气味结合蛋白(OBP)与常见杀虫剂结合的分子机制在O.sauteri中仍然未知。在这项研究中,我们在体外表达了OsauOBP8,并进行了荧光竞争结合试验,以研究OsauOBP8对杀虫剂的功能。结果表明,OsauOBP8可以与四种常见的杀虫剂(辛硫磷,非尼托硫磷,毒死蜱,溴氰菊酯)。随后,利用分子对接技术预测并获得候选的6个氨基酸残基(K4、K6、K13、R31、K49、K55),然后进行突变。结果表明,三个关键残基(K4,K6,R31)在与杀虫剂结合的OsauOBP8中起重要作用。我们的研究确定了OsauOBP8与杀虫剂的关键结合位点,并有助于更好地了解OBPs对O.sauteri杀虫剂的分子机制。
    Chemical sensing systems are vital in the growth and development of insects. Orius sauteri (Poppius) (Hemiptera: Anthocoridae) is an important natural enemy of many pests. The molecular mechanism of odorant binding proteins (OBPs) binding with common insecticides is still unknow in O. sauteri. In this study, we expressed in vitro OsauOBP8 and conducted fluorescence competition binding assay to investigate the function of OsauOBP8 to insecticides. The results showed that OsauOBP8 could bind with four common insecticides (phoxim, fenitrothion, chlorpyrifos, deltamethrin). Subsequently, we used molecular docking to predict and obtained candidate six amino acid residues (K4, K6, K13, R31, K49, K55) and then mutated. The result showed that three key residues (K4, K6, R31) play important role in OsauOBP8 bound to insecticides. Our study identified the key binding sites of OsauOBP8 to insecticides and help to better understand the molecular mechanism of OBPs to insecticides in O. sauteri.
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  • 文章类型: Journal Article
    化学感应系统在寄主植物的定位中起着重要作用。Plasgioderaversicolora(鞘翅目:Chrysomelidae)是一种世界性的食叶森林害虫,仅以水杨酸树为食。目前还没有对杂色假单胞菌气味结合蛋白(OBP)的功能进行研究。在目前的研究中,我们发现PverOBP37在男性和女性触角中高表达,头,和腿通过定量实时PCR。通过荧光竞争结合测定法确定PverOBP37与18种寄主植物挥发物的结合特性。结果表明,PverOBP37能与寄主植物挥发物结合,o-cymene.此外,通过分子对接鉴定了PverOBP37对邻甲基异丙基苯的四个候选关键氨基酸残基(F8,Y50,F103和R107)。确认Y50、F103和R107突变的功能测定是PverOBP37的关键氨基酸残基,其参与与邻-异丙基苯并甲苯的结合。击倒PverOBP37和交配雌性的Y管行为生物测定导致对o-cymene的吸引力显着降低。这项研究不仅揭示了PverOBP37的分子机制,而且还表明PverOBP37对于检测寄主植物挥发物是必不可少的,作为在P中寻找产卵位点的线索。
    The chemosensory system plays an important role in the host plants location. Plagiodera versicolora (Coleoptera: Chrysomelidae) is a worldwide leaf-eating forest pest that feeds exclusively on salicaceous trees. There is no function study of odorant binding proteins (OBPs) in P. versicolora. In the current study, we found that PverOBP37 has a high expression in male and female antennae, heads, and legs by quantitative real-time PCR. The binding properties of PverOBP37 to 18 host plant volatiles were determined by fluorescence competition binding assays. The results showed that PverOBP37 could bind to the host plant volatile, o-cymene. Furthermore, four candidate key amino acid residues (F8, Y50, F103, and R107) of PverOBP37 to o-cymene were identified by molecular docking. The functional assay to confirm Y50, F103, and R107 mutations were key amino acid residues of PverOBP37 involved in the binding to o-cymene. Knockdown of PverOBP37 and Y-tube behavioral bioassays of mated females led to a significantly reduced attraction to o-cymene. This study not only revealed the molecular mechanism of PverOBP37 but also suggested that PverOBP37 is essential to detect host plant volatiles as cues to search for egg-laying sites in P. versicolora.
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  • 文章类型: Journal Article
    从一只动物的连续血液采样对于理解个体动物中的药代动力学(PK)与药理学或毒理学事件之间的关系是有用的。为了评估其在小鼠中的可行性,两种治疗性抗体用于评估不同采血方法的影响,采样点,和PK上的测定平台。向小鼠静脉内施用Denosumab和Panitumumab,并且从颈静脉或尾静脉收集每个点仅0.05mL血液样品。从小鼠连续收集血液样品或通过传统的复合取样从每只小鼠收集。两种药物的血浆浓度通过使用Gyrolab的通用配体结合测定法或通过具有串联质谱的通用超高效液相色谱法来测定。两个测定平台显示出可接受的准确性和精密度,并给出了相当的药物PK参数,这表明两种检测方法均成功应用于PK评估。在连续和复合血液采样之间注意到PK曲线中的可比较结果,并且两个采样位点中的差异不影响PK。这些发现表明,微量采样与通用测定相结合可用于评估小鼠中治疗性抗体的PK谱。
    Serial blood sampling from one animal is useful to understand relationship between pharmacokinetics (PK) and pharmacological or toxicological events in individual animals. To assess its feasibility in mice, two therapeutic antibodies were used to evaluate impacts by different blood sampling methods, sampling sites, and assay platforms on PK. Denosumab and Panitumumab were intravenously administered to mice and only 0.05 mL of blood sample per point was collected from jugular vein or tail vein. Blood samples were collected serially from a mouse or collected by traditional composite sampling from each mouse. Plasma concentrations of the two drugs were assayed by a generic ligand binding assay using Gyrolab or by a generic ultra-performance liquid chromatography with tandem mass spectrometry. The two assay platforms showed acceptable accuracy and precision and gave comparable PK parameters of the drugs, suggesting that both assays were successfully applied to the PK assessments. Comparable results in the PK profiles were noted between serial and composite blood samplings and differences in the two sampling sites did not impact PK. These findings suggest that microsampling combined with generic assays is useful to assess PK profiles of therapeutic antibodies in mice.
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  • 文章类型: Journal Article
    E6011,人源化抗Fractalkine单克隆抗体,正在开发用于治疗各种炎症性疾病,如类风湿性关节炎。治疗性抗体可诱导抗药物抗体(ADA)的产生,其可降低功效和/或增强免疫原性反应。重要的是要进行ADA测定以了解正在开发的生物治疗剂的特征。因此,已开发出一种简单且可重复的测定法,用于通过电化学发光(ECL)检测来测定猴子和人血清中针对E6011的ADA。生物素化E6011,ADA的免疫复合物,将钌标记的E6011连接到抗生物素蛋白包被的孔上用于ECL信号检测。确定筛选和确认切点以判断阴性或阳性ADA。ADA在猴和人血清中的敏感性为1.61和1.34ng/mL,分别。测定的准确度和精密度在±20%和20%以内,分别。在1和4μg/mL的替代ADA水平下,确保了猴子和人血清中测定的药物耐受性高达100和1000μg/mLE6011,分别。所开发的测定成功地应用于猴和人中的ADA定量以支持免疫原性评估。
    E6011, a humanized anti-fractalkine monoclonal antibody, is under development for the treatment of various inflammatory diseases, such as rheumatoid arthritis. Therapeutic antibodies may induce production of anti-drug antibodies (ADA) that may deteriorate efficacy and/or enhance immunogenic reaction. It is important to have an ADA assay to understand the characteristics of biotherapeutics under development. A simple and reproducible assay has thus been developed for the determination of ADA against E6011 in monkey and human serum by electrochemiluminescence (ECL) detection. An immune-complex of biotinylated E6011, ADA, and ruthenium-labeled E6011 was attached to avidin-coated wells for ECL signal detection. Screening and confirmatory cutpoints were determined to judge negative or positive ADA. Sensitivity of ADA was 1.61 and 1.34 ng/mL in monkey and human serum, respectively. Accuracy and precision of the assay were within ±20% and 20%, respectively. Drug tolerance of the assay in monkey and human sera was ensured up to 100 and 1000 μg/mL E6011 at the surrogate ADA levels of 1 and 4 μg/mL, respectively. The developed assay was successfully applied to ADA quantification in monkeys and humans in support of immunogenicity assessments.
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  • 文章类型: Journal Article
    Duchenne型肌营养不良症(DMD)是一种遗传性疾病,其特征是由肌营养不良蛋白突变引起的进行性肌肉损失。导致肌养蛋白水平降低。肌营养不良蛋白表达是用于评估恢复患者肌营养不良蛋白水平的治疗的生物标志物。目前,使用蛋白质印迹的半定量分析,将肌营养不良蛋白的表达标准化为对照群体的表达,用于监管备案。然而,目前的方法在灵敏度方面受到限制,量化,和再现性。为了解决这个问题,建立了一种使用单分子计数技术的高度灵敏和定量的夹心免疫测定法,重组肌营养不良蛋白作为校准物。选择捕获和检测抗体以检测全长肌养蛋白。使用这种优化的测定法,肌强直性营养不良(n=9)和DMD(n=8)受试者的肌肉样本中的肌营养不良蛋白水平为93.2±31.9(范围:49.4-145.3)和14.5±6.8(范围:6.18-22.6)fmol/总蛋白mg,分别。DMD样品中测得的肌营养不良蛋白的最低浓度比定量下限高5倍,蛋白质印迹法未检测到的水平。这些数据表明该测定准确且灵敏地测量了肌营养不良蛋白,并且可用于评估肌营养不良蛋白恢复疗法的临床试验。
    Duchenne muscular dystrophy (DMD) is a genetic disease characterized by progressive muscle loss caused by mutations in dystrophin, resulting in decreased dystrophin levels. Dystrophin protein expression is a biomarker used to evaluate treatments that restore patient dystrophin levels. Currently, a semiquantitative assay using western blotting, which normalizes dystrophin expression to that of a control population, is used for regulatory filing. However, the current methods are limited in terms of sensitivity, quantification, and reproducibility. To address this, a highly sensitive and quantitative sandwich immune assay using Single Molecule Counting technology was established, with recombinant dystrophin protein as the calibrator. Capture and detection antibodies were selected to detect full-length dystrophin. Using this optimized assay, dystrophin levels in muscle samples from Myotonic Dystrophy (n = 9) and DMD (n = 8) subjects were 93.2 ± 31.9 (range: 49.4-145.3) and 14.5 ± 6.8 (range: 6.18-22.6) fmol/total protein mg, respectively. The lowest concentration of dystrophin measured in the DMD samples was 5 times higher than that in the lower limit of quantitation, a level not detected by western blotting. These data indicate that this assay accurately and sensitively measured dystrophin protein and may be useful in clinical trials assessing dystrophin restoration therapies.
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  • 文章类型: Journal Article
    节食夜蛾是一种多食性害虫,并可能损害世界各地大量不同的寄主植物。两种通用气味剂结合蛋白(GOBPs)与通用挥发物和杀虫剂结合的分子机制仍是空白。在这项研究中,我们研究了两种GOBP在S.frugiperda中的功能,通过表达两个SfruGOBP并通过荧光竞争结合测定法测试结合亲和力。结果表明,SfruGOBP1对38种一般挥发物中的4种和7种杀虫剂中的3种具有结合亲和力。相比之下,SfruGOBP2对21种挥发物和4种杀虫剂显示出更广泛的配体结合谱,这表明SfruGOBP2在感知宿主挥发物方面可能比SfruGOBP1起更重要的作用。此外,我们采用分子对接和定点突变实验来探索两个SfruGOBP的关键氨基酸残基对杀虫剂配体的影响。本研究为探索两种GOBPs结合植物挥发物和杀虫剂的嗅觉机制提供了有价值的信息。
    Spodoptera frugiperda is a kind of polyphagous pest, and can damage a large number different host plants around the worldwide. The molecular mechanisms of two general odorant binding proteins (GOBPs) binding with general volatiles and insecticides are still blank. In this study, we investigated the function of two GOBPs in S. frugiperda, by expressing two SfruGOBPs and tested the binding affinities by the fluorescence competition binding assays. The results exhibited that SfruGOBP1 has binding affinities to 4 of 38 general volatiles and 3 of 7 insecticides. In contrast, SfruGOBP2 showed a broader ligand-binding spectrum to 21 volatiles and 4 insecticides, suggesting SfruGOBP2 may plays a more important role in perceiving host volatiles than SfruGOBP1. Furthermore, we used molecular docking and site-directed mutagenesis assay to explored the key amino acid residues of two SfruGOBP to insecticides ligand. This study provides some valuable information to exploring the olfactory mechanism of two GOBPs bound the host plant volatiles and insecticides in S. frugiperda.
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  • 文章类型: Journal Article
    背景:一般气味结合蛋白(GOBP)在昆虫嗅觉识别性信息素和植物挥发物中起关键作用。因此,根据对信息素成分和植物挥发物的表征来鉴定美国白蛾(Drury)中的GOBP仍然未知。
    结果:在这项研究中,克隆了两个山葵(HcunGOBPs)基因,并对其表达谱和气味结合特性进行了系统分析。首先,组织表达研究表明,HcunGOBP1和HcunGOBP2在两性的触角中均高表达,表明他们可能参与性信息素的感知。其次,这两个HcunGOBPs基因在大肠杆菌中表达,并使用配体结合测定法来评估与其性信息素成分(包括两种醛和两种环氧化物)的结合亲和力,和一些植物挥发物。HcunGOBP2对两种醛组分(Z9,Z12,Z15-18Ald和Z9,Z12-18Ald)显示出高结合亲和力,并显示出对两种环氧化物成分的低结合亲和力(1,Z3,Z6-9S,10R-环氧-21Hy和Z3,Z6-9S,10R-环氧-21Hy),而HcunGOBP1显示与所有四种性信息素成分的弱但显着结合。此外,两种HcunGOBP均表现出对测试的植物挥发物的可变结合亲和力。第三,在利用同源性的HcunGOBPs的计算机模拟研究中,结构建模,和分子对接显示关键的疏水残基可能参与HcunGOBP与其性信息素成分和植物挥发物的结合。
    结论:我们的研究表明,这两种HcunGOBP可能作为未来研究HcunGOBP配体结合的潜在靶标,提供对H.cunea嗅觉机制的见解。本文受版权保护。保留所有权利。
    BACKGROUND: General odor-binding proteins (GOBPs) play critical roles in insect olfactory recognition of sex pheromones and plant volatiles. Therefore, the identification of GOBPs in Hyphantria cunea (Drury) based on their characterization to pheromone components and plant volatiles is remain unknown.
    RESULTS: In this study, two H. cunea (HcunGOBPs) genes were cloned, and their expression profiles and odorant binding characteristics were systematically analyzed. Firstly, the tissue expression study showed that both HcunGOBP1 and HcunGOBP2 were highly expressed in the antennae of both sexes, indicating their potential involvement in the perception of sex pheromones. Secondly, these two HcunGOBPs genes were expressed in Escherichia coli and ligand binding assays were used to assess the binding affinities to its sex pheromone components including two aldehydes and two epoxides, and some plant volatiles. HcunGOBP2 showed high binding affinities to two aldehyde components (Z9, Z12, Z15-18Ald and Z9, Z12-18Ald), and showed low binding affinities to two epoxide components (1, Z3, Z6-9S, 10R-epoxy-21Hy and Z3, Z6-9S, 10R-epoxy-21Hy), whereas HcunGOBP1 showed weak but significant binding to all four sex pheromone components. Furthermore, both HcunGOBPs demonstrated variable binding affinities to the plant volatiles tested. Thirdly, in silico studies of HcunGOBPs utilized homology, structure modeling, and molecular docking revealed critical hydrophobic residues might be involved in the binding of HcunGOBPs to their sex pheromone components and plant volatiles.
    CONCLUSIONS: Our study suggests that these two HcunGOBPs may serve as potential targets for future studies of HcunGOBPs ligand binding, providing insight in the mechanism of olfaction in H. cunea. © 2023 Society of Chemical Industry.
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  • 文章类型: Journal Article
    生物制品,特别是单克隆抗体(mAb),是整个制药行业药物发现和开发组合中越来越重要的一部分。为了对MABS的支柱1和2[1]进行强有力的演示,需要专门的测定法来测量mAb和靶标之间的复杂相互作用。这对于可溶性靶标相互作用的解释尤其重要。在某些情况下,具有重叠目的的多个测定(例如,开发了复杂和全面的检测方法)。回想起来,这些努力可能导致在试验开发和数据生成上花费了过多的时间和资源。我们的建议是尽早将资源投入到mAb和靶标的总测定的开发中。游离靶标测定数据可能是不准确的,并且由于测量期间的重新平衡,报告的游离靶标水平高于收集时样品中存在的水平。总测定格式本质上对样品制备的影响不太敏感,测定条件,和重新平衡比自由或复杂的测定。众所周知,病理学/药理学最终是由自由靶标驱动的,并且对其动力学的了解至关重要。然而,生成适当的总目标数据并使用基于模型的游离目标浓度估计是比利用直接测定得出的估计更可靠的方法。在使用免费数据的地方,在开发检测方法和利用数据进行定量分析时,应前瞻性地考虑潜在偏差.
    Biologics, especially monoclonal antibodies (mAbs), are an increasingly important part of the drug discovery and development portfolio across the pharmaceutical industry. To enable robust demonstration of pillars 1 and 2 [1] for mAbs, specialised assays are required to measure the complex interactions between mAb and target. This is especially important for the interpretation of soluble target interactions. In some instances, multiple assays with overlapping purposes (e.g., developing both complex and total assays) have been developed. In retrospect, these efforts may have led to excessive time and resources spent in assay development and the generation of data that is contradictory or misleading. Our recommendation is to invest resources early into the development of total assays for both mAb and target. Free target assay data may be inaccurate and report higher levels of free target than are present in the sample at collection due to re-equilibrium during measurement. Total assay formats are inherently less sensitive to the effects of sample preparation, assay conditions, and re-equilibration than free or complex assays. It is acknowledged that pathology/pharmacology is ultimately driven by the free target and knowledge of its dynamics are critical. However, generation of appropriate total target data and using model-based estimation of free target concentrations is a more robust approach than utilisation of direct assay derived estimates. Where free data are utilised, the potential biases should be prospectively considered when developing the assay and utilising the data for quantitative analyses.
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  • 文章类型: Journal Article
    DenileukinDiftitox(DD),包含白喉毒素(DT)和白介素2(IL2)的片段,是为治疗淋巴瘤而开发的,并已在日本批准上市。包括临床前动物中的药代动力学和免疫原性的毒理学评估对于药物开发很重要,因此通过电化学发光(ECL)检测开发了DD和抗药物抗体(ADA)的测定法。对于DD测定,将钌标记的抗DTAb和生物素化的抗IL2Ab与血清样品混合,并通过链霉抗生物素蛋白包被的孔捕获混合物用于ECL检测。对于ADA测定,生物素化DD的免疫复合物信号,钌标记的DD,还有ADA,确定与链霉亲和素平板的结合。DD可从10ng/mL定量。质量控制样品的准确度和精密度在±20%和20%以内,分别,并成功评估了大鼠血清中DD的稳定性。ADA的阳性对照样品的精确度在接受标准内,并且通过统计分析确定筛选和确证测定中ADA检测的切点值。药物诱导的ADA通过筛选测定,然后进行确认测定。开发的方法已成功用于评估药代动力学和免疫原性,以支持大鼠的毒性研究。
    Denileukin Diftitox (DD), comprising fragments of diphtheria toxin (DT) and interleukin-2 (IL2), was developed for the treatment of lymphoma and has been approved for marketing in Japan. Toxicological evaluation including pharmacokinetics and immunogenicity in preclinical animals is important for drug development and thus the assays of DD and anti-drug antibody (ADA) were developed by electrochemiluminescence (ECL) detection. For the DD assay, ruthenium-labeled anti-DT Ab and biotinylated anti-IL2 Ab were mixed with serum samples and the mixture was captured by streptavidin-coated wells for ECL detection. For the ADA assay, signals of immuno-complex of biotinylated DD, ruthenium-labeled DD, and ADA, bound to streptavidin plate were determined. DD was quantifiable from 10 ng/mL. Accuracy and precision of quality control samples were within ±20% and 20%, respectively, and stability of DD in rat serum was successfully assessed. Precision of positive control samples of ADA was within the acceptance criteria and cut point values for ADA detection in the screening and confirmatory assay were determined by statistical analysis. Drug-induced ADA was detected by screening assay followed by confirmatory assay. The developed method was successfully applied to assess pharmacokinetics and immunogenicity to support toxicity studies in rats.
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  • 文章类型: Journal Article
    生物网络的特点是在时间和空间上有不同的相互作用和动力学。许多调节模块并行操作并且彼此互连。一些途径在功能上是已知的,并相应地进行了注释,例如,内吞作用,迁移,或细胞骨架重排。然而,许多相互作用没有很好地表征。为了重建细胞网络中的生物复杂性,我们将现有的实验证实和分析的相互作用与蛋白质相互作用推断框架结合起来,使用实验证实的来自其他生物体的相互作用作为基础。预测评分包括序列相似性,相互作用的进化守恒,同一途径中相互作用的共存,正交学以及结构相似性,以对推断的相互作用进行排序和比较。我们通过研究用烟曲霉(分生孢子,分生孢子,机载,无性孢子)。甚至可以通过直接实验证实九个预测的关键宿主-病原体相互作用中的三个。此外,我们建议使用操纵宿主-病原体相互作用的药物。
    Biological networks are characterized by diverse interactions and dynamics in time and space. Many regulatory modules operate in parallel and are interconnected with each other. Some pathways are functionally known and annotated accordingly, e.g., endocytosis, migration, or cytoskeletal rearrangement. However, many interactions are not so well characterized. For reconstructing the biological complexity in cellular networks, we combine here existing experimentally confirmed and analyzed interactions with a protein-interaction inference framework using as basis experimentally confirmed interactions from other organisms. Prediction scoring includes sequence similarity, evolutionary conservation of interactions, the coexistence of interactions in the same pathway, orthology as well as structure similarity to rank and compare inferred interactions. We exemplify our inference method by studying host-pathogen interactions during infection of Mus musculus (phagolysosomes in alveolar macrophages) with Aspergillus fumigatus (conidia, airborne, asexual spores). Three of nine predicted critical host-pathogen interactions could even be confirmed by direct experiments. Moreover, we suggest drugs that manipulate the host-pathogen interaction.
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