ligand binding assay

配体结合测定
  • 文章类型: Journal Article
    Aprionagermari(希望)作为一种危险的枯木害虫提出了重大威胁,对森林树木造成重大伤害。研究A.germari的嗅觉感觉系统对于开发生态友好型控制策略具有重要的理论前景。迄今为止,然而,A.germari的嗅觉感知机制在很大程度上仍然未知。因此,我们在四个不同的身体部位进行了germari的转录组测序:触角,前腿骨节,口器(上颌和唇瓣),和腹部终端,精确定位气味结合蛋白(OBP)基因并分析其表达。我们发现八个AgerOBP(5、19、23、25、29、59、63、70)在触角中高表达。在我们的竞争性绑定实验中,AgerOBP23显示出对信息素成分fuscumol乙酸酯的强结合能力,八种植物挥发物(法尼醇,顺式-3-己烯醛,Nerolidol,醋酸肉豆蔻醇,顺式-3-己烯基苯甲酸酯,(-)-α-cedrene,3-乙基苯乙酮,和癸烷),和四种杀虫剂(毒死蜱,辛硫磷,吲哚沙卡威,和氯氰菊酯)。然而,AgerOBP29和AgerOBP63对这些测试的化学物质没有显示出突出的结合活性。通过同源建模和分子对接,我们确定了参与AgerOBP23与这些配体结合过程的关键氨基酸位点,这揭示了其结合特异性背后的分子相互作用。我们的研究表明,AgerOBP23可能是未来AgerOBP配体结合研究的潜在靶标。这种方法符合逆向化学生态学原理,通过进一步探索OBP与各种化合物之间的分子相互作用,为未来研究的重点是引诱剂或驱虫剂的发展奠定基础。
    Apriona germari (Hope) presents a significant threat as a dangerous wood-boring pest, inflicting substantial harm to forest trees. Investigating the olfactory sensory system of A. germari holds substantial theoretical promise for developing eco-friendly control strategies. To date, however, the olfactory perception mechanism in A. germari remains largely unknown. Therefore, we performed transcriptome sequencing of A. germari across four distinct body parts: antennae, foreleg tarsal segments, mouthparts (maxillary and labial palps), and abdomen terminals, pinpointing the odorant binding protein (OBP) genes and analyzing their expression. We found eight AgerOBPs (5, 19, 23, 25, 29, 59, 63, 70) highly expressed in the antennae. In our competitive binding experiments, AgerOBP23 showed strong binding abilities to the pheromone component fuscumol acetate, eight plant volatiles (farnesol, cis-3-hexenal, nerolidol, myristol acetate, cis-3-hexenyl benzoate, (-)-α-cedrene, 3-ethylacetophenone, and decane), and four insecticides (chlorpyrifos, phoxim, indoxacarb, and cypermethrin). However, AgerOBP29 and AgerOBP63 did not show prominent binding activities to these tested chemicals. Through homology modeling and molecular docking, we identified the key amino acid sites involved in the binding process of AgerOBP23 to these ligands, which shed light on the molecular interactions underlying its binding specificity. Our study suggests that AgerOBP23 may serve as a potential target for future investigations of AgerOBP ligand binding. This approach is consistent with the reverse chemical ecology principle, establishing the groundwork for future studies focusing on attractant or repellent development by exploring further the molecular interactions between OBP and various compounds.
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  • 文章类型: Journal Article
    化学传感系统在昆虫的生长和发育中至关重要。Oriussauteri(Poppius)(半翅目:Anthocoridae)是许多害虫的重要天敌。气味结合蛋白(OBP)与常见杀虫剂结合的分子机制在O.sauteri中仍然未知。在这项研究中,我们在体外表达了OsauOBP8,并进行了荧光竞争结合试验,以研究OsauOBP8对杀虫剂的功能。结果表明,OsauOBP8可以与四种常见的杀虫剂(辛硫磷,非尼托硫磷,毒死蜱,溴氰菊酯)。随后,利用分子对接技术预测并获得候选的6个氨基酸残基(K4、K6、K13、R31、K49、K55),然后进行突变。结果表明,三个关键残基(K4,K6,R31)在与杀虫剂结合的OsauOBP8中起重要作用。我们的研究确定了OsauOBP8与杀虫剂的关键结合位点,并有助于更好地了解OBPs对O.sauteri杀虫剂的分子机制。
    Chemical sensing systems are vital in the growth and development of insects. Orius sauteri (Poppius) (Hemiptera: Anthocoridae) is an important natural enemy of many pests. The molecular mechanism of odorant binding proteins (OBPs) binding with common insecticides is still unknow in O. sauteri. In this study, we expressed in vitro OsauOBP8 and conducted fluorescence competition binding assay to investigate the function of OsauOBP8 to insecticides. The results showed that OsauOBP8 could bind with four common insecticides (phoxim, fenitrothion, chlorpyrifos, deltamethrin). Subsequently, we used molecular docking to predict and obtained candidate six amino acid residues (K4, K6, K13, R31, K49, K55) and then mutated. The result showed that three key residues (K4, K6, R31) play important role in OsauOBP8 bound to insecticides. Our study identified the key binding sites of OsauOBP8 to insecticides and help to better understand the molecular mechanism of OBPs to insecticides in O. sauteri.
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  • 文章类型: Journal Article
    化学感应系统在寄主植物的定位中起着重要作用。Plasgioderaversicolora(鞘翅目:Chrysomelidae)是一种世界性的食叶森林害虫,仅以水杨酸树为食。目前还没有对杂色假单胞菌气味结合蛋白(OBP)的功能进行研究。在目前的研究中,我们发现PverOBP37在男性和女性触角中高表达,头,和腿通过定量实时PCR。通过荧光竞争结合测定法确定PverOBP37与18种寄主植物挥发物的结合特性。结果表明,PverOBP37能与寄主植物挥发物结合,o-cymene.此外,通过分子对接鉴定了PverOBP37对邻甲基异丙基苯的四个候选关键氨基酸残基(F8,Y50,F103和R107)。确认Y50、F103和R107突变的功能测定是PverOBP37的关键氨基酸残基,其参与与邻-异丙基苯并甲苯的结合。击倒PverOBP37和交配雌性的Y管行为生物测定导致对o-cymene的吸引力显着降低。这项研究不仅揭示了PverOBP37的分子机制,而且还表明PverOBP37对于检测寄主植物挥发物是必不可少的,作为在P中寻找产卵位点的线索。
    The chemosensory system plays an important role in the host plants location. Plagiodera versicolora (Coleoptera: Chrysomelidae) is a worldwide leaf-eating forest pest that feeds exclusively on salicaceous trees. There is no function study of odorant binding proteins (OBPs) in P. versicolora. In the current study, we found that PverOBP37 has a high expression in male and female antennae, heads, and legs by quantitative real-time PCR. The binding properties of PverOBP37 to 18 host plant volatiles were determined by fluorescence competition binding assays. The results showed that PverOBP37 could bind to the host plant volatile, o-cymene. Furthermore, four candidate key amino acid residues (F8, Y50, F103, and R107) of PverOBP37 to o-cymene were identified by molecular docking. The functional assay to confirm Y50, F103, and R107 mutations were key amino acid residues of PverOBP37 involved in the binding to o-cymene. Knockdown of PverOBP37 and Y-tube behavioral bioassays of mated females led to a significantly reduced attraction to o-cymene. This study not only revealed the molecular mechanism of PverOBP37 but also suggested that PverOBP37 is essential to detect host plant volatiles as cues to search for egg-laying sites in P. versicolora.
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  • 文章类型: Journal Article
    节食夜蛾是一种多食性害虫,并可能损害世界各地大量不同的寄主植物。两种通用气味剂结合蛋白(GOBPs)与通用挥发物和杀虫剂结合的分子机制仍是空白。在这项研究中,我们研究了两种GOBP在S.frugiperda中的功能,通过表达两个SfruGOBP并通过荧光竞争结合测定法测试结合亲和力。结果表明,SfruGOBP1对38种一般挥发物中的4种和7种杀虫剂中的3种具有结合亲和力。相比之下,SfruGOBP2对21种挥发物和4种杀虫剂显示出更广泛的配体结合谱,这表明SfruGOBP2在感知宿主挥发物方面可能比SfruGOBP1起更重要的作用。此外,我们采用分子对接和定点突变实验来探索两个SfruGOBP的关键氨基酸残基对杀虫剂配体的影响。本研究为探索两种GOBPs结合植物挥发物和杀虫剂的嗅觉机制提供了有价值的信息。
    Spodoptera frugiperda is a kind of polyphagous pest, and can damage a large number different host plants around the worldwide. The molecular mechanisms of two general odorant binding proteins (GOBPs) binding with general volatiles and insecticides are still blank. In this study, we investigated the function of two GOBPs in S. frugiperda, by expressing two SfruGOBPs and tested the binding affinities by the fluorescence competition binding assays. The results exhibited that SfruGOBP1 has binding affinities to 4 of 38 general volatiles and 3 of 7 insecticides. In contrast, SfruGOBP2 showed a broader ligand-binding spectrum to 21 volatiles and 4 insecticides, suggesting SfruGOBP2 may plays a more important role in perceiving host volatiles than SfruGOBP1. Furthermore, we used molecular docking and site-directed mutagenesis assay to explored the key amino acid residues of two SfruGOBP to insecticides ligand. This study provides some valuable information to exploring the olfactory mechanism of two GOBPs bound the host plant volatiles and insecticides in S. frugiperda.
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  • 文章类型: Journal Article
    背景:一般气味结合蛋白(GOBP)在昆虫嗅觉识别性信息素和植物挥发物中起关键作用。因此,根据对信息素成分和植物挥发物的表征来鉴定美国白蛾(Drury)中的GOBP仍然未知。
    结果:在这项研究中,克隆了两个山葵(HcunGOBPs)基因,并对其表达谱和气味结合特性进行了系统分析。首先,组织表达研究表明,HcunGOBP1和HcunGOBP2在两性的触角中均高表达,表明他们可能参与性信息素的感知。其次,这两个HcunGOBPs基因在大肠杆菌中表达,并使用配体结合测定法来评估与其性信息素成分(包括两种醛和两种环氧化物)的结合亲和力,和一些植物挥发物。HcunGOBP2对两种醛组分(Z9,Z12,Z15-18Ald和Z9,Z12-18Ald)显示出高结合亲和力,并显示出对两种环氧化物成分的低结合亲和力(1,Z3,Z6-9S,10R-环氧-21Hy和Z3,Z6-9S,10R-环氧-21Hy),而HcunGOBP1显示与所有四种性信息素成分的弱但显着结合。此外,两种HcunGOBP均表现出对测试的植物挥发物的可变结合亲和力。第三,在利用同源性的HcunGOBPs的计算机模拟研究中,结构建模,和分子对接显示关键的疏水残基可能参与HcunGOBP与其性信息素成分和植物挥发物的结合。
    结论:我们的研究表明,这两种HcunGOBP可能作为未来研究HcunGOBP配体结合的潜在靶标,提供对H.cunea嗅觉机制的见解。本文受版权保护。保留所有权利。
    BACKGROUND: General odor-binding proteins (GOBPs) play critical roles in insect olfactory recognition of sex pheromones and plant volatiles. Therefore, the identification of GOBPs in Hyphantria cunea (Drury) based on their characterization to pheromone components and plant volatiles is remain unknown.
    RESULTS: In this study, two H. cunea (HcunGOBPs) genes were cloned, and their expression profiles and odorant binding characteristics were systematically analyzed. Firstly, the tissue expression study showed that both HcunGOBP1 and HcunGOBP2 were highly expressed in the antennae of both sexes, indicating their potential involvement in the perception of sex pheromones. Secondly, these two HcunGOBPs genes were expressed in Escherichia coli and ligand binding assays were used to assess the binding affinities to its sex pheromone components including two aldehydes and two epoxides, and some plant volatiles. HcunGOBP2 showed high binding affinities to two aldehyde components (Z9, Z12, Z15-18Ald and Z9, Z12-18Ald), and showed low binding affinities to two epoxide components (1, Z3, Z6-9S, 10R-epoxy-21Hy and Z3, Z6-9S, 10R-epoxy-21Hy), whereas HcunGOBP1 showed weak but significant binding to all four sex pheromone components. Furthermore, both HcunGOBPs demonstrated variable binding affinities to the plant volatiles tested. Thirdly, in silico studies of HcunGOBPs utilized homology, structure modeling, and molecular docking revealed critical hydrophobic residues might be involved in the binding of HcunGOBPs to their sex pheromone components and plant volatiles.
    CONCLUSIONS: Our study suggests that these two HcunGOBPs may serve as potential targets for future studies of HcunGOBPs ligand binding, providing insight in the mechanism of olfaction in H. cunea. © 2023 Society of Chemical Industry.
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  • 文章类型: Journal Article
    信息素结合蛋白(PBP)在昆虫性信息素的感知中起重要作用,具有识别信息素成分并将其运输到气味感应神经元的嗅觉受体上的功能。Orthagaachatina,一种严重的樟树害虫,使用三种I型的混合物(Z11-16:OAc,Z11-16:OH和Z11-16:Ald)和一种II型(Z3,Z6,Z9,Z12,Z15-23:H)性信息素成分,其中Z11-16:OAc是主要组分,其它是次要组分。在这项研究中,我们首次证明了三种PBP使用混合型性信息素在蛾中的信息素成分之间的识别区分。首先,组织表达研究表明,所有三种O.achatina的PBP仅在触角中表达,并且高度男性偏向,表明他们参与了对性信息素的感知。第二,这三种PBPs在大肠杆菌中表达,并通过荧光竞争结合测定确定了PBPs与四种性信息素成分和某些信息素类似物的结合亲和力。结果表明,OachPBP1以很高的结合亲和力结合了所有四种性信息素成分,而OachPBP2仅对三种I型成分具有高或中等的结合亲和力,OachPBP3仅对三种次要信息素成分具有高结合亲和力。此外,通过三维结构建模和配体分子对接,在三个PBPs中鉴定出与性信息素组分结合的关键氨基酸残基,预测PBPs与信息素组分之间的相互作用。我们的研究为使用混合型性信息素的蛾的嗅觉机制提供了基本见解。
    Pheromone-binding proteins (PBPs) play important roles in perception of insect sex pheromones, functioning to recognize and transport pheromone components onto the olfactory receptors of the odorant sensing neurons. Orthaga achatina, a serious pest of camphor trees, uses a mixture of three Type I (Z11-16:OAc, Z11-16:OH and Z11-16:Ald) and one Type II (Z3,Z6,Z9,Z12,Z15-23:H) sex pheromone components in its sex communication, in which Z11-16:OAc is the major component and others are minor components. In this study, we for the first time demonstrated that the three PBPs differentiated in recognition among pheromone components in a moth using mixed-type sex pheromones. First, tissue expression study showed that all three PBPs of O. achatina were expressed only in antennae and highly male-biased, suggesting their involvement in perception of the sex pheromones. Second, the three PBPs were expressed in Escherichia coli and the binding affinities of PBPs to four sex pheromone components and some pheromone analogs were determined by the fluorescence competition binding assays. The results showed that OachPBP1 bound all four sex pheromone components with high binding affinity, while OachPBP2 had high or moderate binding affinity only to three Type I components, and OachPBP3 had high binding affinity only to three minor pheromone components. Furthermore, key amino acid residues that bind to sex pheromone components were identified in three PBPs by 3-D structure modeling and ligand molecular docking, predicting the interactions between PBPs and pheromone components. Our study provides a fundamental insight into the olfactory mechanism in moths that use mixed-type sex pheromones.
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  • 文章类型: Journal Article
    The Vitamin D External Quality Assessment Scheme (DEQAS) distributes human serum samples four times per year to over 1000 participants worldwide for the determination of total serum 25-hydroxyvitamin D [25(OH)D)]. These samples are stored at -40 °C prior to distribution and the participants are instructed to store the samples frozen at -20 °C or lower after receipt; however, the samples are shipped to participants at ambient conditions (i.e., no temperature control). To address the question of whether shipment at ambient conditions is sufficient for reliable performance of various 25(OH)D assays, the equivalence of DEQAS human serum samples shipped under frozen and ambient conditions was assessed. As part of a Vitamin D Standardization Program (VDSP) commutability study, two sets of the same nine DEQAS samples were shipped to participants at ambient temperature and frozen on dry ice. Twenty-eight laboratories participated in this study and provided 34 sets of results for the measurement of 25(OH)D using 20 ligand binding assays and 14 liquid chromatography-tandem mass spectrometry (LC-MS/MS) methods. Equivalence of the assay response for the frozen versus ambient DEQAS samples for each assay was evaluated using multi-level modeling, paired t-tests including a false discovery rate (FDR) approach, and ordinary least squares linear regression analysis of frozen versus ambient results. Using the paired t-test and confirmed by FDR testing, differences in the results for the ambient and frozen samples were found to be statistically significant at p < 0.05 for four assays (DiaSorin, DIAsource, Siemens, and SNIBE prototype). For all 14 LC-MS/MS assays, the differences in the results for the ambient- and frozen-shipped samples were not found to be significant at p < 0.05 indicating that these analytes were stable during shipment at ambient conditions. Even though assay results have been shown to vary considerably among different 25(OH)D assays in other studies, the results of this study also indicate that sample handling/transport conditions may influence 25(OH)D assay response for several assays.
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  • 文章类型: Journal Article
    通过维生素D标准化计划(VDSP)进行了实验室间研究,以评估标准参考材料(SRM)和能力测试/外部质量评估(PT/EQA)样品的可交换性,以使用配体结合测定和液相色谱-串联质谱(LC-MS/MS)测定血清总25-羟基维生素D[25(OH)D]。使用参考测量程序(RMP)为一组50个单供体血清样品分配了25-羟基维生素D2[25(OH)D2]和25-羟基维生素D3[25(OH)D3]的目标值。评估的SRM和PT/EQA样本包括SRM972a(四个级别),SRM2973,六个美国病理学家学院(CAP)基于准确性的维生素D(ABVD)样本,和九个维生素D外部质量评估计划(DEQAS)样本。使用20种配体结合测定和14种LC-MS/MS方法从28个不同的实验室获得结果。使用总血清25(OH)D的测试测定结果(即,25(OH)D2和25(OH)D3的总和)确定的单供体样品和RMP目标值,计算线性回归和95%预测区间(PI).使用浓度为25(OH)D2低于30nmol/L的42个样品的子集,具有高浓度25(OH)D2的一个或多个SRM和PT/EQA样品被认为使用11个独特配体结合测定中的5个不可交换。SRM972a(4级),具有高外源浓度的3-epi-25(OH)D3,对于50%的LC-MS/MS测定被认为是不可交换的。
    An interlaboratory study was conducted through the Vitamin D Standardization Program (VDSP) to assess commutability of Standard Reference Materials® (SRMs) and proficiency testing/external quality assessment (PT/EQA) samples for determination of serum total 25-hydroxyvitamin D [25(OH)D] using ligand binding assays and liquid chromatography-tandem mass spectrometry (LC-MS/MS). A set of 50 single-donor serum samples were assigned target values for 25-hydroxyvitamin D2 [25(OH)D2] and 25-hydroxyvitamin D3 [25(OH)D3] using reference measurement procedures (RMPs). SRM and PT/EQA samples evaluated included SRM 972a (four levels), SRM 2973, six College of American Pathologists (CAP) Accuracy-Based Vitamin D (ABVD) samples, and nine Vitamin D External Quality Assessment Scheme (DEQAS) samples. Results were received from 28 different laboratories using 20 ligand binding assays and 14 LC-MS/MS methods. Using the test assay results for total serum 25(OH)D (i.e., the sum of 25(OH)D2 and 25(OH)D3) determined for the single-donor samples and the RMP target values, the linear regression and 95% prediction intervals (PIs) were calculated. Using a subset of 42 samples that had concentrations of 25(OH)D2 below 30 nmol/L, one or more of the SRM and PT/EQA samples with high concentrations of 25(OH)D2 were deemed non-commutable using 5 of 11 unique ligand binding assays. SRM 972a (level 4), which has high exogenous concentration of 3-epi-25(OH)D3, was deemed non-commutable for 50% of the LC-MS/MS assays.
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  • 文章类型: Journal Article
    Hyphantria cunea (Drury) is a destructive invasive pest species in China that uses type II sex pheromone components. To date, however, the binding mechanisms of its sex pheromone components to their respective pheromone-binding proteins (HcunPBPs 1/2/3) have not been explored. In the current study, all three HcunPBPs were expressed in the antennae of both sexes. The prokaryotic expression and ligand binding assays were employed to study the binding of the moth\'s four sex pheromone components, including two aldehydes and two epoxides, and 24 plant volatiles to the HcunPBPs. Our results showed that the abilities of these HcunPBPs to bind to the aldehydes were significantly different from binding to the epoxides. These three HcunPBPs also selectively bind to some of the plant volatiles tested. Our molecular docking results indicated that some crucial hydrophobic residues might play a role in the binding of HcunPBPs to their sex pheromone components. Three HcunPBPs have different selectivities for pheromone components with both major and minor structural differences. Our study provides a fundamental insight into the olfactory mechanism of moths at the molecular level, especially for moth species that use various type II pheromone components.
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  • 文章类型: Comparative Study
    A broad range of pesticides have been reported to interfere with the normal function of the thyroid endocrine system. However, the precise mechanism(s) of action has not yet been thoroughly elucidated. In this study, 21 pesticides were assessed for their binding interactions and the potential to disrupt thyroid homeostasis. In the GH3 luciferase reporter gene assays, 5 of the pesticides tested had agonistic effects in the order of procymidone > imidacloprid > mancozeb > fluroxypyr > atrazine. 11 pesticides inhibited luciferase activity of T3 to varying degrees, demonstrating their antagonistic activity. And there are 4 pesticides showed mixed effects when treated with different concentrations. Surface plasmon resonance (SPR) biosensor technique was used to directly measure the binding interactions of these pesticides to the human thyroid hormone receptor (hTR). 13 pesticides were observed to bind directly with TR, with a KD ranging from 4.80E-08 M to 9.44E-07 M. The association and disassociation of the hTR/pesticide complex revealed 2 distinctive binding modes between the agonists and antagonists. At the same time, a different binding mode was displayed by the pesticides showed mix agonist and antagonist activity. In addition, the molecular docking simulation analyses indicated that the interaction energy calculated by CDOCKER for the agonists and antagonists correlated well with the KD values measured by the surface plasmon resonance assay. These results help to explain the differences of the TR activities of these tested pesticides.
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