filamentous

丝状
  • 文章类型: Case Reports
    心肌肌瘤是全球报道的一种被忽视的热带病,尤其是在热带和亚热带地区。它在自然界中无处不在,是一种土壤传播的,革兰氏阳性,丝状的,具有锐角分支的需氧菌。在流行地区进行创伤接种是这种使人衰弱的疾病的主要感染方式。临床三联症,引流窦,颗粒脓液对诊断菌丝瘤有很大的特征性和特异性。然而,原发性皮肤病变的无痛性常常使患者出现在临床医生面前。通常处于疾病的晚期。这里,我们提供了一个非常有趣的病例报告,其中有一个年轻的女性患者,他出现了一个单一的颈部结节,但后来被诊断为门心肌瘤。及时诊断和开始治疗被证明是患者的福音,在几周内以皮肤损伤愈合和疤痕不明显的形式几乎完全恢复。
    Nocardial mycetoma is a neglected tropical disease reported worldwide, especially in tropical and subtropical regions. It is ubiquitous in nature and is a soil-borne, gram-positive, filamentous, aerobic bacteria with acute angle branching. Traumatic inoculation in endemic areas is the primary mode of infection of this debilitating disease. The clinical triad of tumefaction, draining sinus, and pus discharge with granules is very much characteristic and specific for clinching the diagnosis of mycetoma. However, the painless nature of the primary skin lesion often makes the patient present late to the clinician, often in the advanced stages of the disease. Here, we present a very intriguing case report of a young female patient who presented with a single neck nodule but was later diagnosed as a case of nocardial mycetoma. Timely diagnosis and initiation of therapy proved to be a boon for the patient with almost complete recovery within a few weeks in the form of healed skin lesions and insignificant scarring.
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  • 文章类型: Journal Article
    生物膜形成蓝细菌在红树林生态系统中含量丰富,殖民各种生态位,包括沉积物表面和附着物,它们可以覆盖大面积,但受到的关注有限。最近从瓜德罗普岛分离出几种丝状分离物,说明了这些生物膜中存在的多样性和新颖性。在这项研究中,在瓜德罗普岛生物膜中大量发现的属于三个新谱系的9个菌株的特征在于基因组测序,形态学和超微结构检查,代谢组指纹分析并搜索次级代谢物生物合成途径。确认将两个谱系分配给已知属,即Scytonema和Jaaginema。第三谱系对应于本文描述为Karukerafilumgen的新Coleofascicula属。11月。将属于本属的四个菌株分为两个亚进化枝,其中之一显示了固氮所必需的基因以及产生地蛋白的完整途径。这项研究为红树林生物膜形成蓝细菌的多样性提供了新的见解,包括对新属的基于基因组的描述和可用于Jaaginema属的第一个基因组序列。
    Biofilm-forming cyanobacteria are abundant in mangrove ecosystems, colonizing various niches including sediment surface and periphyton where they can cover large areas, yet have received limited attention. Several filamentous isolates were recently isolated from Guadeloupe, illustrating the diversity and novelty present in these biofilms. In this study, nine strains belonging to three novel lineages found abundantly in Guadeloupe biofilms are characterized by genome sequencing, morphological and ultrastructural examination, metabolome fingerprinting and searched for secondary metabolites biosynthesis pathways. Assignation of two lineages to known genera is confirmed, namely Scytonema and Jaaginema. The third lineage corresponds to a new Coleofasciculales genus herein described as Karukerafilum gen. nov. The four strains belonging to this genus group into two subclades, one of which displays genes necessary for nitrogen fixation as well as the complete pathway for geosmin production. This study gives new insights into the diversity of mangrove biofilm-forming cyanobacteria, including genome-based description of a new genus and the first genome sequence available for the genus Jaaginema.
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  • 文章类型: Journal Article
    虽然组织培养是诊断感染的金标准,手术切除组织的组织学检查可能是诊断组织感染的关键组成部分。这份简短报告的目的是提醒外科病理学家,假单胞菌在组织学上可能出现惊人的丝状,并且可能在某种程度上模仿丝状细菌的外观。放线菌或诺卡氏菌,或薄的真菌菌丝。次要目的是提高人们的认识,即假单胞菌有时只能通过使用改良的银浸渍方法(Steiner染色法)在组织学上进行鉴定。在三个不同的手术病理亚科(眼科病理,心血管病理学,和皮肤病理学)超过1年。所有病例都是福尔马林固定的,石蜡包埋组织,使用苏木精和伊红(H&E)和多种组织化学染色。4例铜绿假单胞菌培养,在第五种情况下,使用基于聚合酶链反应的方法检测了非铜绿假单胞菌。在五个不同的组织部位中发现了明显的丝状假单胞菌生物:血管移植物,摘除(全眼)标本,巩膜活检,软组织切除,还有皮肤穿刺活检.在五个案例中的一个中,在H&E上看到了这些生物,五个中只有两个是在布朗-霍普斯染色上看到的生物。在所有五个案例中,这些生物是在斯坦纳染色上被鉴定出来的。因此,重要的是要认识到假单胞菌可以出现明显的丝状,怀疑假单胞菌或其他细菌感染,外科病理学家将被建议使用Steiner染色剂来最一致地检测生物体。
    Although tissue culture is the gold standard for diagnosing infection, histologic examination of surgically resected tissue can be a critical component in the diagnosis of tissue infection. The goal of this brief report is to alert surgical pathologists that Pseudomonas species can appear strikingly filamentous histologically and may somewhat mimic the appearance of filamentous bacteria, such Actinomyces or Nocardia, or thin fungal hyphae. A secondary aim is to raise awareness that Pseudomonas can sometimes only be identified histologically through the use of a modified silver impregnation method (Steiner stain). Five cases of filamentous Pseudomonas were encountered in three different surgical pathology subspecialities (ophthalmic pathology, cardiovascular pathology, and dermatopathology) over a 1-year period. All cases were of formalin-fixed, paraffin-embedded tissue, stained using hematoxylin & eosin (H&E) and multiple histochemical stains. Four cases grew Pseudomonas aeruginosa in culture and, in the fifth case, a nonaeruginosa species was detected using polymerase chain reaction-based methods. The markedly filamentous-appearing Pseudomonas organisms were identified in five different tissue sites: vascular graft, enucleation (whole eye) specimen, scleral biopsy, soft-tissue excision, and skin punch biopsy. In one of the five cases the organisms were seen on H&E, and in only two of the five were the organisms seen on Brown-Hopps stain. In all five cases, the organisms were identified on Steiner stain. It is therefore important to recognize that Pseudomonas can appear markedly filamentous, Pseudomonas or other bacterial infection is suspected, the surgical pathologist would be advised to employ the Steiner stain to most consistently detect the organisms.
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  • 文章类型: Review
    在这次审查中,我探讨了真菌中局部适应的普遍但未被重视的作用。由于对真菌种类及其特性的了解有限,因此历史上很难研究真菌的局部适应性。但是测序技术的进步带来了新的希望。真菌的丝状性质使进化中的一些假设无效,因为它们能够以遗传上不同的核共享相同细胞质的多核实体形式存在。关于当地适应的许多见解来自研究真菌,在宿主-病原体相互作用的背景下,关于局部适应的许多经验证据来自研究真菌毒力基因,耐药性,和环境适应。一起,这些见解描绘了涉及真菌局部适应的各种过程及其与真菌的不寻常细胞生物学(多核,丝状习惯),但是还有很多未知的东西,我们对真菌物种的认识有很大的差距,他们的表型,以及他们适应当地条件的方式。
    In this review, I explore the pervasive but underappreciated role of local adaptation in fungi. It has been difficult historically to study local adaptation in fungi because of the limited understanding of fungal species and their traits, but new hope has been offered with technological advances in sequencing. The filamentous nature of fungi invalidates some assumptions made in evolution because of their ability to exist as multinucleate entities with genetically different nuclei sharing the same cytoplasm. Many insights on local adaptation have come from studying fungi, and much of the empirical evidence gathered about local adaptation in the context of host-pathogen interactions comes from studying fungal virulence genes, drug resistance, and environmental adaptation. Together, these insights paint a picture of the variety of processes involved in fungal local adaptation and their connections to the unusual cell biology of Fungi (multinucleate, filamentous habit), but there is much that remains unknown, with major gaps in our knowledge of fungal species, their phenotypes, and the ways by which they adapt to local conditions.
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  • 文章类型: Case Reports
    真菌性角膜炎是一种隐匿且经常误诊的感染。那些患有慢性眼表疾病的人,隐形眼镜,全身性免疫抑制,糖尿病是最常见的真菌性角膜炎。一名84岁的男性患者,有圆锥角膜双侧穿透性角膜移植术(PK)的病史,左眼出现疼痛和视力下降。发现角膜穿孔,立即进行全层角膜移植术。将样本送去进行细菌和真菌培养。术后局部使用皮质类固醇。从角膜刮片中分离出白僵菌。通过减少皮质类固醇的剂量并局部添加那他霉素和全身性泊沙康唑来修改术后治疗。在局部地塞米松0.1%b.i.d下,移植后四个月未发生复发。这是先前移植的角膜中第一例角膜炎和穿孔。由于感染的稀有性,没有明确的指导原则对白斑芽孢杆菌感染的术后预防。继续使用皮质类固醇或改用另一种免疫抑制疗法并选择适当的抗真菌治疗方案都构成了重大的治疗难题。
    Fungal keratitis is an infection that is insidious and frequently misdiagnosed. Those with chronic eye surface conditions, contact lenses, systemic immunosuppression, and diabetes have been the most frequently affected with fungal keratitis. An 84-year-old male patient with a history of bilateral penetrating keratoplasty (PK) for keratoconus presented with pain and decreased visual acuity on his left eye. A corneal perforation was found, which was treated immediately with a full-thickness corneal transplant. The specimen was sent for bacterial and fungal cultures. Topical corticosteroids were prescribed postoperatively. Beauveria bassiana was isolated from the corneal scrapings. The postoperative treatment was modified by reducing the dose of corticosteroid and adding topical natamycin together with systemic posaconazole. No recurrence occurred in the transplant four months postoperatively under topical dexamethasone 0.1% b.i.d.  This is the first case of keratitis and perforation in a previously transplanted cornea. Due to the rarity of the infection, there are no clear guidelines for postoperative prophylaxis in B. bassiana infection. Either the continuation of corticosteroids or the switch to another immunosuppressive therapy and selecting the appropriate antifungal regimen posed a significant therapeutic dilemma.
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  • 文章类型: Journal Article
    通过基于植物的表达生产植物螺旋病毒样颗粒(VLP)一直存在问题,先前的研究表明RNA支架对于它们的有效生产可能是必要的。为了检查这一点,我们比较了两种痘病毒的VLP积累,木瓜花叶病毒和交替花叶病毒(AltMV),当外壳蛋白从基于复制马铃薯病毒X的载体(pEff)和非复制载体(pEAQ-HT)表达时。当使用pEff时,可以纯化显著更大量的VLP。pEff系统在生产来自不同病毒家族的螺旋病毒的VLP方面也非常有效。检查从pEff产生的AltMV和烟草花叶病毒VLP的RNA含量,发现存在载体衍生的RNA序列,这表明复制RNA充当VLP组装的支架。AltMVVLP的Cryo-EM分析表明,它们的结构与真正的potexvirus颗粒非常相似。因此,我们得出结论,产生复制形式的RNA的载体,比如pEff,是非常有效的生产螺旋VLP。
    The production of plant helical virus-like particles (VLPs) via plant-based expression has been problematic with previous studies suggesting that an RNA scaffold may be necessary for their efficient production. To examine this, we compared the accumulation of VLPs from two potexviruses, papaya mosaic virus and alternanthera mosaic virus (AltMV), when the coat proteins were expressed from a replicating potato virus X- based vector (pEff) and a non-replicating vector (pEAQ-HT). Significantly greater quantities of VLPs could be purified when pEff was used. The pEff system was also very efficient at producing VLPs of helical viruses from different virus families. Examination of the RNA content of AltMV and tobacco mosaic virus VLPs produced from pEff revealed the presence of vector-derived RNA sequences, suggesting that the replicating RNA acts as a scaffold for VLP assembly. Cryo-EM analysis of the AltMV VLPs showed they had a structure very similar to that of authentic potexvirus particles. Thus, we conclude that vectors generating replicating forms of RNA, such as pEff, are very efficient for producing helical VLPs.
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  • 文章类型: Journal Article
    The global regulator LaeA has been confirmed to govern the production of secondary metabolites in fungi. Herein, we examined the role of LaeA in Chaetomium globosum. Similarly as observed in other filamentous, CgLaeA had a significant effect on the secondary metabolism. The ΔCglaeA mutant strain did not exhibit chaetoglobosin A, whereas its production was restored in the CglaeAC strain. In addition, CglaeA overexpression led to an increase in chaetoglobosin A production. Transcriptional examination of the mutants indicated that CgLaeA positively regulated the expression of pathway-specific transcription factor CgcheR, while another global regulator CgvelB was negatively regulated by CgLaeA. Furthermore, CgLaeA also affected the morphological phenotypes of fungi. The ΔCglaeA mutant strains exhibited decreased sporulation and pigmentation compared with the wild-type strain, whereas the phenotypes were restored in the CglaeAC strain. Moreover, OE::CglaeA exhibited increased levels of sporulation and pigmentation. Moreover, inhibition activity against phytopathogenic fungi affected by decreased mycotoxin production of the ΔCglaeA mutant strain.
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  • 文章类型: Case Reports
    放线菌是头颈部感染的一种相对零星的原因,它们的外观通常没有特征,因此对诊断提出了挑战。本文旨在展示这种罕见的下颌骨,并强调其管理。本报告描述了一例55岁的农村女性,该女性表现出疼痛和肿胀,影响了下颌骨的左侧。直视图和锥形束计算机断层扫描成像显示,颊和舌侧皮质板存在多个不清晰的放射性和穿孔。细针抽吸微生物学用于确定微生物,并对感染部位进行阿莫西林克拉维酸治疗。患者对及时的全身性抗生素和局部手术措施反应良好,感染完全缓解并自发骨再生。尽管下颌骨的罕见放线菌病是可以治愈的,应包括在颌骨骨髓炎的鉴别诊断中。早期和准确的诊断和及时的干预证实了更好的结果。
    Actinomycetes are a relatively sporadic cause of infection of the head-and-neck region and their appearance is usually uncharacteristic, and hence pose a challenge for the diagnosis. The present article intends to exhibit this rarity afflicting mandible and highlight its management. The present report describes a case of a 55-year-old countryside female who presented with pain and swelling affecting the left side of the mandible. Orthopantomograph and cone-beam computed tomography imaging showed multiple ill-defined radiolucencies and perforations of the buccal and lingual cortical plates. Fine-needle aspiration microbiology was used to ascertain the microbial organism and the patient was treated with amoxicillin + clavulanic acid with curettage of the infected site. The patient responded well to prompt systemic antibiotics and local surgical measures with complete resolution of the infection and spontaneous bone regeneration. Although rare actinomycosis of the mandible is curable and should be included in the differential diagnosis of osteomyelitis of the jaw. Early and accurate diagnosis and prompt intervention confirm better outcomes.
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  • 文章类型: Journal Article
    在格陵兰和斯瓦尔巴群岛进行了采样活动,以探索寒冷栖息地的真菌多样性。发现了三组非常丰富的菌株,由最近描述的或尚未描述的嗜冷和寡营养酵母和双态真菌组成,在我们的研究中,约占担子菌可培养总多样性的50%。这些分类单元的出现也已通过与培养无关的方法得到证明。基于核糖体基因簇序列的系统发育分析(28S(LSU)的D1/D2结构域,18S(SSU),具有5.8SrDNA的ITS)和延伸因子一α(TEF)的蛋白质编码基因序列,细胞色素b(CYTB)和从纯培养物中获得的RNA聚合酶II的两个亚基(RPB1和RPB2),本研究中提出的分离类群属于担子菌,puciniomcotina亚门,类微生物,植物科。序列的数据集支持对三种物种的识别:Camptobasilumgelus,大竹。11月。(前型菌株EXF-12713)和冰心菌。和sp。11月。(外型菌株EXF-13111)。在斯瓦尔巴群岛和格陵兰的样本中发现了甘草凝胶,而这里提出的新物种的代表,C.北极,只在格陵兰冰盖中发现.嗜肉菌。11月。为在斯瓦尔巴群岛和格陵兰冰川环境中发现的双态/丝状分离物竖立。出租车,对其使用了无效的名称\'Rhodotorulasvalbardensis\',属于这个属。基于核糖体基因,弓形虫和冰心菌是相关的,系统发育上与冰川酶属和冰毒属最密切相关。七个基因的系统发育仅限于具有可用序列的分类群,支持将嗜冰菌放置在Camptobasiaceae中。
    Sampling campaigns in Greenland and Svalbard were executed to explore fungal diversity in cold habitats. Three very abundant groups of strains were discovered, consisting either of recently described or of yet-undescribed psychrophilic and oligotrophic yeasts and dimorphic fungi, accounting for around 50 % of the total cultivable diversity of basidiomycetes in our studies. The occurrence of these taxa has also been demonstrated by culture-independent methods. Based on phylogenetic analyses of ribosomal gene cluster sequences (D1/D2 domains of 28S (LSU), 18S (SSU), ITS with 5.8S rDNA) and sequences of protein-coding genes for elongation factor one alpha (TEF), cytochrome b (CYTB) and two subunits of the RNA polymerase II (RPB1 and RPB2) obtained from pure cultures, the isolated taxa presented in this study belong to Basidiomycota, subphylum Pucciniomycotina, class Microbotryomycetes, family Camptobasidiaceae. The dataset of the sequences supported the recognition of three species: Camptobasidium gelus, Camptobasidium arcticum sp. nov. (ex-type strain EXF-12713) and Psychromyces glacialis gen. and sp. nov. (ex-type strain EXF-13111). Camptobasidium gelus was found in the Svalbard and Greenland samples, while representatives of the here proposed new species, C. arcticum, were found only in the Greenland Ice Sheet. Psychromyces gen. nov. was erected for the dimorphic/filamentous isolates found in Svalbard and Greenland glacial environments. The taxon, for which the invalid name \'Rhodotorula svalbardensis\' has been used, belongs to this genus. Based on ribosomal genes, Camptobasidium arcticum and Psychromyces glacialis are related, phylogenetically most closely related to the genera Glaciozyma and Cryolevonia. Seven genes phylogeny restricted to taxa with available sequences, supported the placement of Psychromyces to Camptobasidiaceae.
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  • 文章类型: Journal Article
    It is time to review all the available data and find the distinctive characteristics of actin that make it such an important cell molecule. The presented double-stranded organization of filamentous actin cannot explain the strong polymorphism of actin fibrils. In this work, we performed bioinformatics analysis of a set of 296 amino acid actin sequences from representatives of different classes of the Chordate type. Based on the results of the analysis, the degree of conservatism of the primary structure of this protein in representatives of the Chordate type was determined. In addition, 155 structures of rabbit actin obtained using X-ray diffraction analysis and electron microscopy have been analyzed over the past 30 years. From pairwise alignments and the calculation of root-mean-square deviations (RMSDs) for these structures, it follows that they are very similar to each other without correlation with the structure resolution and the reconstruction method: the RMSDs for 11,781 pairs did not exceed 3 Å. It turned out that in rabbit actin most of the charged amino acid residues are located inside the protein, which is not typical for the protein structure. We found that two of six exon regions correspond to structural subdomains. To test the double-stranded organization of the actin structure, it is necessary to use new approaches and new techniques, taking into account our new data obtained from the structural analysis of actin.
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