developmental stability

发育稳定性
  • 文章类型: Journal Article
    社会变形虫盘基网柄菌根据养分的可用性在孤立生长和社会果实化之间切换。在饥饿之下,细胞聚集并形成由孢子和利他茎细胞组成的子实体。一旦细胞社交化,他们完成了果实化,即使有新的营养来源。这种社会承诺令人困惑,因为它阻碍了单个细胞迅速恢复孤立生长。一种观点认为,阻碍人们选择促进过早放弃承诺的特征。我们研究了通过强制重新喂养过早减少承诺的结果。我们的结果表明,当重新标记的细胞与非重新标记的细胞相互作用时,他们中的一些人变得孤独,而一小部分被重定向到利他主义的茎,不管他们最初的命运。重新标记的细胞表现出降低的粘结性,并在形态发生过程中被分选。我们的发现为社会变形虫的分工提供了见解,在这种情况下,凝聚力较低的人成为利他主义者。
    The social amoeba Dictyostelium discoideum switches between solitary growth and social fruitification depending on nutrient availability. Under starvation, cells aggregate and form fruiting bodies consisting of spores and altruistic stalk cells. Once cells socially committed, they complete fruitification, even if a new source of nutrients becomes available. This social commitment is puzzling because it hinders individual cells from resuming solitary growth quickly. One idea posits that traits that facilitate premature de-commitment are hindered from being selected. We studied outcomes of the premature de-commitment through forced refeeding. Our results show that when refed cells interacted with non-refed cells, some of them became solitary, whereas a fraction was redirected to the altruistic stalk, regardless of their original fate. The refed cells exhibited reduced cohesiveness and were sorted out during morphogenesis. Our findings provide an insight into a division of labor of the social amoeba, in which less cohesive individuals become altruists.
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  • 文章类型: Journal Article
    进化发育生物学(evo-devo)的进展加深了我们对胚胎发生的内在特性的理解,随着自然选择和种群遗传学,形状表型多样性。最近的经验和理论研究的重点是高度发育稳定的表型在进化中更加保守。以前,我们证明了在日本的田园诗(Oryziaslatipes)中,胚胎阶段和具有高稳定性的基因,通过全胚胎RNA-seq估计,在后代中高度保守。然而,在全胚胎水平评价的基因表达水平稳定性的确切来源尚不清楚.这种稳定性可归因于两个不同的来源:稳定的细胞内表达水平或空间稳定的表达模式。在这里,我们证明了在全胚胎RNA-seq中观察到的稳定性可以归因于细胞水平的稳定性(细胞水平的基因表达的低变异性)。我们量化了在medaka早期发育过程中参与图案化背腹和rostrocaudal区域的七个关键基因的表达水平和空间基因表达模式的细胞间变化。我们通过计数转录本评估了细胞内变异性,发现其与全胚胎RNA-seq数据中观察到的变异显着相关。相反,空间基因表达模式的变异,通过个体内左右不对称进行评估,没有显示相关性。鉴于先前报道的在整个胚胎发生过程中表达水平的稳定性和保守性之间的相关性,我们的发现表明了一个潜在的总体趋势:发育系统的稳定性或不稳定性以及随之而来的进化多样性可能主要取决于内在的基本要素,例如细胞内状态的可变性。
    Progress in evolutionary developmental biology (evo-devo) has deepened our understanding of how intrinsic properties of embryogenesis, along with natural selection and population genetics, shape phenotypic diversity. A focal point of recent empirical and theoretical research is the idea that highly developmentally stable phenotypes are more conserved in evolution. Previously, we demonstrated that in Japanese medaka (Oryzias latipes), embryonic stages and genes with high stability, estimated through whole-embryo RNA-seq, are highly conserved in subsequent generations. However, the precise origin of the stability of gene expression levels evaluated at the whole-embryo level remained unclear. Such stability could be attributed to two distinct sources: stable intracellular expression levels or spatially stable expression patterns. Here we demonstrate that stability observed in whole-embryo RNA-seq can be attributed to stability at the cellular level (low variability in gene expression at the cellular levels). We quantified the intercellular variations in expression levels and spatial gene expression patterns for seven key genes involved in patterning dorsoventral and rostrocaudal regions during early development in medaka. We evaluated intracellular variability by counting transcripts and found its significant correlation with variation observed in whole-embryo RNA-seq data. Conversely, variation in spatial gene expression patterns, assessed through intraindividual left-right asymmetry, showed no correlation. Given the previously reported correlation between stability and conservation of expression levels throughout embryogenesis, our findings suggest a potential general trend: the stability or instability of developmental systems-and the consequent evolutionary diversity-may be primarily anchored in intrinsic fundamental elements such as the variability of intracellular states.
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  • 文章类型: Journal Article
    六倍体普通小麦的BBAA亚基因组可以被“提取”以构成可行的和自我繁殖的新型四倍体小麦,被称为提取四倍体小麦(ETW)。先前的研究表明,ETW表现出表型异常以及基因表达和表观遗传修饰的改变。没有进行人口层面的调查,不清楚发展是否稳定,一种在所有自然有机体中进化的基本属性,可能在ETW中被破坏了。这里,我们测量了ETW及其六倍体供体种群中五个形态性状和体细胞染色体稳定性的变化,重新合成的六倍体和天然四倍体小麦。我们观察到ETW的表型缺陷。同时,我们记录了ETW的种群内变异比其他小麦基因型大得多,很可能是由于ETW发育稳定性的破坏。此外,仅在ETW中检测到体细胞结构染色体变异。比较转录组分析表明,ETW发育稳定性的破坏可能与全基因组基因表达的大规模失调有关,而不是与基因突变有关。基因表达的种群网络分析暗示了可变性状之间的内在连通性,而基因集富集分析提供了基因表达失调和交错性状变异之间的可能联系。
    The BBAA subgenomes of hexaploid common wheat can be \'extracted\' to constitute a viable and self-reproducing novel tetraploid wheat, termed extracted tetraploid wheat (ETW). Prior studies have shown ETW manifesting phenotypic abnormalities and alteration in gene expression and epigenetic modifications. No population level investigation has been conducted, leaving the issue unclear regarding whether developmental stability, an essential property evolved in all natural organisms, might have been undermined in ETW. Here, we measured variations in five morphological traits and somatic chromosomal stability in populations of ETW and of its hexaploid donor, a resynthesized hexaploid and a natural tetraploid wheat. We observed phenotypic defects in ETW. Meanwhile, we documented much greater within-population variations in ETW than in the other wheat genotypes, most probably due to disrupted developmental stability in ETW. Also, somatic structural chromosome variations were detected only in ETW. Comparative transcriptome analyses indicated that the disrupted developmental stability of ETW is likely linked to massive dysregulation of genome-wide gene expression rather than to genetic mutations. Population network analysis of gene expression implicated intrinsic connectivity among the variable traits, while gene set enrichment analysis provided possible links between dysregulated gene expression and interlaced trait variation.
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  • 文章类型: Journal Article
    目的:波动不对称水平被认为是发育稳定性的假定信号,因此,根据这个理论框架,更多的对称个体应该处于更好的生物学状态,并具有更大的生殖潜力。在这里,我们假设拥有更对称面孔的女性有更成功的生殖。
    方法:数据来自164名绝经后波兰妇女。拍摄面部照片并计算整体面部不对称性(OFA)。使用多元回归模型分析了OFA与生殖参数之间的关联。此外,进行中介分析以检验OFA对生殖成功的间接影响.
    结果:OFA与出生儿童数量之间存在统计学上的显着关系,这是由第一次繁殖的年龄介导的(p=0.03),然而,效应的大小相当低。具有更对称面孔的女性在初次繁殖时的年龄较早,因此,更多的孩子。
    结论:由于建议在子宫内建立波动不对称,这些发现揭示了发育条件在塑造女性生殖潜能和表现方面可能的终身重要性。
    The level of fluctuating asymmetry is suggested as a putative signal of developmental stability, thus according to this theoretical framework more symmetric individuals should be in better biological condition and have greater reproductive potential. Here we hypothesize that women with more symmetric faces have more successful reproduction.
    Data were collected from 164 postmenopausal Polish women. Facial photographs were taken and the overall facial asymmetry (OFA) was calculated. The associations between the OFA and reproductive parameters were analyzed using multiple regression models. Furthermore, the mediation analysis was conducted to test for the indirect effects of the OFA on reproductive success.
    There was a statistically significant relationship between the OFA and the number of children born, which was mediated by the age at first reproduction (p = 0.03), however, the size of the effect was rather low. Women with more symmetric faces had an earlier age at first reproduction and, in consequence, a greater number of children.
    As fluctuating asymmetry is suggested to be established in utero, these findings shed light on the possible life-long importance of developmental conditions in shaping women\'s reproductive potential and performance.
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  • 文章类型: Journal Article
    BACKGROUND: Phenotypic evolution is mainly explained by selection for phenotypic variation arising from factors including mutation and environmental noise. Recent theoretical and experimental studies have suggested that phenotypes with greater developmental stability tend to have a constant phenotype and gene expression level within a particular genetic and environmental condition, and this positively correlates with stronger evolutionary conservation, even after the accumulation of genetic changes. This could reflect a novel mechanism that contributes to evolutionary conservation; however, it remains unclear whether developmental stability is the cause, or whether at least it contributes to their evolutionary conservation. Here, using Japanese medaka lines, we tested experimentally whether developmental stages and gene expression levels with greater stability led to their evolutionary conservation.
    RESULTS: We first measured the stability of each gene expression level and developmental stage (defined here as the whole embryonic transcriptome) in the inbred F0 medaka population. We then measured their evolutionary conservation in the F3 generation by crossing the F0 line with the distantly related Japanese medaka line (Teradomori), followed by two rounds of intra-generational crossings. The results indicated that the genes and developmental stages that had smaller variations in the F0 generation showed lower diversity in the hybrid F3 generation, which implies a causal relationship between stability and evolutionary conservation.
    CONCLUSIONS: These findings suggest that the stability in phenotypes, including the developmental stages and gene expression levels, leads to their evolutionary conservation; this most likely occurs due to their low potential to generate phenotypic variation. In addition, since the highly stable developmental stages match with the body-plan-establishment stage, it also implies that the developmental stability potentially contributed to the strict conservation of animal body plan.
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  • 文章类型: Journal Article
    大小和形状是大多数生物健康的重要决定因素。因此,有机体在生长过程中调节大小和形状的能力,包含不同起源的发育障碍的影响,被认为是发展系统的关键特征。在最近的一项研究中,通过对实验室饲养的鳞翅目毛虫样本进行几何形态分析,我们发现了能够抑制大小和形状变化的调节机制的证据,包括双边波动不对称,在幼虫发育过程中。然而,在更大的环境变化下,调节机制的有效性仍有待探索。这里,基于同一物种的野外饲养样本,通过采用相同的尺寸和形状变化测量,我们发现,在更自然的环境条件下,抑制油菜幼虫生长过程中发育障碍影响的调节机制也是有效的。这项研究可能有助于更好地表征发育稳定性和渠化的机制以及它们在生物体与其环境之间的发育相互作用中的综合作用。
    Size and shape are important determinants of fitness in most living beings. Accordingly, the capacity of the organism to regulate size and shape during growth, containing the effects of developmental disturbances of different origin, is considered a key feature of the developmental system. In a recent study, through a geometric morphometric analysis on a laboratory-reared sample of the lepidopteran Pieris brassicae, we found evidence of regulatory mechanisms able to restrain size and shape variation, including bilateral fluctuating asymmetry, during larval development. However, the efficacy of the regulatory mechanism under greater environmental variation remains to be explored. Here, based on a field-reared sample of the same species, by adopting identical measurements of size and shape variation, we found that the regulatory mechanisms for containing the effects of developmental disturbances during larval growth in P. brassicae are also effective under more natural environmental conditions. This study may contribute to better characterization of the mechanisms of developmental stability and canalization and their combined effects in the developmental interactions between the organism and its environment.
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  • 文章类型: Journal Article
    发育不稳定(DI)是指个体在给定的条件下无法产生特定的发育结果,通常认为是由开发过程中经历的随机扰动引起的。波动不对称(FA)-双边特征上的不对称,平均而言,是对称的(或与设计产生的不对称偏离)-已用于测量DI。追溯到半个世纪前,在过去的三十年里,心理学研究人员研究了FA(通常根据身体或面部特征测量)与许多感兴趣的结果之间的关联,包括心理障碍,认知能力,吸引力,和性行为。十年前,对近100项研究结果的荟萃分析得出了几个结论.平均而言,FA和感兴趣的特征之间存在较小但统计上可靠的关联。虽然谦虚,预计这些关联会大大低估与基础DI的关联强度。尽管研究中的样本量很大,我们仍然缺乏一个很好的处理哪些性状受DI影响最大。荟萃分析的一个主要方法论含义是,大多数研究都是,个别,检测关联的能力严重不足。虽然提供了一些有趣的发现,许多研究也是过去十年的动力不足;因此,较新的文献也可能是嘈杂的。一些大规模的研究是例外。未来的进展取决于额外的大规模研究和研究人员对电力问题的敏感性。同样,DI和FA驱动心理学研究的理论假设和概念化可能需要修正以解释经验模式。
    Developmental instability (DI) is an individual\'s inability to produce a specific developmental outcome under a given set of conditions, generally thought to result from random perturbations experienced during development. Fluctuating asymmetry (FA) - asymmetry on bilateral features that, on average, are symmetrical (or asymmetry deviating from that arising from design) - has been used to measure DI. Dating to half a century ago, and accelerating in the past three decades, psychological researchers have examined associations between FA (typically measured on bodily or facial features) and a host of outcomes of interest, including psychological disorders, cognitive ability, attractiveness, and sexual behavior. A decade ago, a meta-analysis on findings from nearly 100 studies extracted several conclusions. On average, small but statistically reliable associations between FA and traits of interest exist. Though modest, these associations are expected to greatly underestimate the strength of associations with underlying DI. Despite the massive sample size across studies, we still lack a good handle on which traits are most strongly affected by DI. A major methodological implication of the meta-analysis is that most studies have been, individually, woefully underpowered to detect associations. Though offering some intriguing findings, much research is the past decade too has been underpowered; hence, the newer literature is also likely noisy. Several large-scale studies are exceptions. Future progress depends on additional large-scale studies and researchers\' sensitivity to power issues. As well, theoretical assumptions and conceptualizations of DI and FA driving psychological research may need revision to explain empirical patterns.
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  • 文章类型: Journal Article
    作为一种特殊的不对称性的波动不对称性可以定义为与所研究的形态结构部分的已知预定比率的偏差。作为表型变异性的一种特殊类型,波动不对称性是个体发育噪声或发育变异性的表现。这种类型的变异性是普遍存在的,并且在观察到的表型多样性中起着重要作用。波动的不对称性水平被证明是最佳发育条件和遗传共适应的指标。它也被视为适合度的参数。因此,波动的不对称性可以衡量发育生物学中的发育稳定性,也可以衡量种群生物学中的种群状况。
    Fluctuating asymmetry as a special kind of asymmetry can be defined as deviations from a known predetermined ratio of the parts of morphological structure under study. As a special type of phenotypic variability fluctuating asymmetry is a manifestation of ontogenetic noise or developmental variability. This type of variability is ubiquitous and plays a significant role in the observed phenotypic diversity. The level of fluctuating asymmetry turns out to be an indicator of optimal developmental conditions and genetic coadaptation. It is also considered as a parameter of fitness. Thus, fluctuating asymmetry acts as a measure of developmental stability in developmental biology and as a measure of population condition in population biology.
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  • 文章类型: Journal Article
    尽管动物的形态多样性,它们的基本解剖模式-每个动物门的身体计划-在数亿年的进化中一直保持高度保守。这归因于每个谱系中身体计划建立发育期(育型期)的保守性。然而,这个生理型时期保守背后的进化机制仍在争论中。提出了基于现代综合概念的各种假设,例如,通过其对胚胎致命性的脆弱性,在生理阶段进行阴性选择。在这里,我们测试了一个新的假设,即生理阶段是发育稳定的;与其他阶段相比,它产生表型变异的可能性较小,这很可能导致了身体计划的进化保守。
    通过分析在相同实验室条件下培养的近交日本medaka胚胎的胚胎,并测量整个胚胎转录组作为表型,我们发现,生理阶段比其他阶段具有更大的发育稳定性。两个野生medaka种群之间的表型差异的比较表明,该时期的适形期及其基因的变化较小,即使在物种内进化过程中积累了环境和突变修饰。具有稳定表达水平的基因富集了参与细胞-细胞信号传导和形态学规范的基因,如Wnt和Hox。暗示这些基因可能参与身体计划的发展。
    这项研究证明了产生表型变异潜力低的发育阶段与微观和宏观进化多样性低的发育阶段之间的对应关系。即适形期。现代合成将进化解释为由突变引起的表型变异的形成过程,我们的结果强调了表型变异容易受到生物体内在性质限制的可能性,即发展稳定,从而使进化结果产生偏差。
    Despite the morphological diversity of animals, their basic anatomical patterns-the body plans in each animal phylum-have remained highly conserved over hundreds of millions of evolutionary years. This is attributed to conservation of the body plan-establishing developmental period (the phylotypic period) in each lineage. However, the evolutionary mechanism behind this phylotypic period conservation remains under debate. A variety of hypotheses based on the concept of modern synthesis have been proposed, such as negative selection in the phylotypic period through its vulnerability to embryonic lethality. Here we tested a new hypothesis that the phylotypic period is developmentally stable; it has less potential to produce phenotypic variations than the other stages, and this has most likely led to the evolutionary conservation of body plans.
    By analyzing the embryos of inbred Japanese medaka embryos raised under the same laboratory conditions and measuring the whole embryonic transcriptome as a phenotype, we found that the phylotypic period has greater developmental stability than other stages. Comparison of phenotypic differences between two wild medaka populations indicated that the phylotypic period and its genes in this period remained less variational, even after environmental and mutational modifications accumulated during intraspecies evolution. Genes with stable expression levels were enriched with those involved in cell-cell signalling and morphological specification such as Wnt and Hox, implying possible involvement in body plan development of these genes.
    This study demonstrated the correspondence between the developmental stage with low potential to produce phenotypic variations and that with low diversity in micro- and macroevolution, namely the phylotypic period. Whereas modern synthesis explains evolution as a process of shaping of phenotypic variations caused by mutations, our results highlight the possibility that phenotypic variations are readily limited by the intrinsic nature of organisms, namely developmental stability, thus biasing evolutionary outcomes.
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  • 文章类型: Journal Article
    个体和群体的发育稳定程度通常是通过其波动不对称(FA)的水平来估计的,即与完美对称的随机偏差。在我们之前的工作中,我们记录了居住在萨兹利卡河生物群落中的Pelophylaxridibundus种群的高水平FA(FAMI指数:个体不对称表现的频率),保加利亚南部人为污染水平很高(生活污水污染)。同时,在位于河流上游的生物群落中(较少破坏的栖息地),人群的FA水平较低。目前,我们介绍了几个形态参数值的研究结果:鼻口长度(SVL),体重(BW),和相同种群的身体条件因子(CF)。此外,我们评估这些形态参数值与波动不对称性(FAMI指数)值之间的相关性,使用Kendall秩相关分析。对表征青蛙身体素质的参数与发育稳定性指标之间的关系的分析-FAMI指数-在每个地点的整个P.ridibundus组的分析中以及性别之间的相关性中,没有建立统计学上的显着相关性。我们认为,研究发展稳定性的方法(分析波动的不对称水平)以及与评估青蛙的身体素质(健康状况)有关的方法应相互独立应用。
    The degree of developmental stability of individuals and populations is most often estimated by their level of fluctuating asymmetry (FA) - the random deviations from perfect symmetry. In our previous work, we recorded high levels of FA (FAMI index: frequency of asymmetric manifestation of an individual) in Pelophylax ridibundus populations that inhabit biotopes at Sazliyka River, south Bulgaria with high levels of anthropogenic pollution (domestic sewage pollution). At the same time, in the biotopes located in the upper reaches of the river (less disrupted habitats), the populations showed low levels of FA. Currently, we present the results of the study of the values of several morphological parameters: snout-vent length (SVL), body weight (BW), and body condition factor (CF) in the same populations of P. ridibundus. In addition, we evaluate the correlation between the values of these morphological parameters and the values of fluctuating asymmetry (the FAMI index), using the Kendall rank correlation analysis. The analysis of the relationships between the parameters characterizing the physical fitness of frogs and the indicator of developmental stability - the FAMI index - did not establish statistically significant correlations in the analyses in the whole groups of P. ridibundus from each site and in the correlations between sexes. We believe that the approaches to the study of developmental stability (analysis of fluctuating asymmetry levels) and those related to the assessment of physical fitness (health status) of frogs should be applied independently of each other.
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