binding mechanisms

  • 文章类型: Journal Article
    虽然粘合剂喷射(BJ)增材制造(AM)在工业应用中具有相当大的前景,缺陷通常会损害零件质量。本研究通过调查绑定机制和分析常见缺陷来解决这些挑战,提出量身定制的解决方案来减轻它们。在BJ-AM中强调缺陷识别以进行有效的质量控制,这项研究提供了过程中纠正和过程后评估的策略,以提高零件质量。它展示了如何成功地处理具有复杂几何形状的金属零件,同时保持一致的材料特性。此外,本文探讨了AISIM2工具钢的显微组织,利用先进的图像处理技术,如数字图像分析和SEM图像来评估碳化物分布。结果表明,M2工具钢中含有较高的M6C碳化物,炉冷样品范围为~2.4%至7.1%,MC碳化物范围为~0.4%至9.4%。在风冷样品中,M6C碳化物的范围为〜2.6%至3.8%,而水冷样品的峰值为~8.52%。烧结条件也影响收缩,炉冷样品的比率最低(1.7±0.4%至5±0.4%),水冷样品的比率最高(2±0.4%至14.1±0.4%)。该研究建议使用具有自主校正功能的实时缺陷检测系统,以提高BJ-AM组件的质量和性能。
    While binder jetting (BJ) additive manufacturing (AM) holds considerable promise for industrial applications, defects often compromise part quality. This study addresses these challenges by investigating binding mechanisms and analyzing common defects, proposing tailored solutions to mitigate them. Emphasizing defect identification for effective quality control in BJ-AM, this research offers strategies for in-process rectification and post-process evaluation to elevate part quality. It shows how to successfully process metallic parts with complex geometries while maintaining consistent material properties. Furthermore, the paper explores the microstructure of AISI M2 tool steel, utilizing advanced image processing techniques like digital image analysis and SEM images to evaluate carbide distribution. The results show that M2 tool steel has a high proportion of M6C carbides, with furnace-cooled samples ranging from ~2.4% to 7.1% and MC carbides from ~0.4% to 9.4%. M6C carbides ranged from ~2.6% to 3.8% in air-cooled samples, while water-cooled samples peaked at ~8.52%. Sintering conditions also affected shrinkage, with furnace-cooled samples showing the lowest rates (1.7 ± 0.4% to 5 ± 0.4%) and water-cooled samples showing the highest (2 ± 0.4% to 14.1 ± 0.4%). The study recommends real-time defect detection systems with autonomous corrective capabilities to improve the quality and performance of BJ-AM components.
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  • 文章类型: Journal Article
    现有的镉(Cd2+)适体,食品中常见的有毒重金属污染物,快速检测方法不能满足Cd2+的检测要求。在以前的工作中,我们发现,将适体-肽缀合物(APC)与肽和适体偶联可以提供一种破坏性较小的方法,并且亲和力显著提高.此外,我们发现适体和肽的空间构象对于在APC中获得适当的亲和力至关重要。因此,我们描述了一种简单的设计策略,通过设计肽取向(N端,C端子)。对于结合常数(Ka)为2.23×106M-1的APC(C1-N),发现了最佳的亲和力,表明APC(C1-N)亲和力比适体显着增加了829.17%。最后,建立了基于滚环扩增(RCA)耦合比荧光的Cd2+检测生物传感器,检出限为0.0036nM,这对于实际水产品检测具有很大的潜力。
    The existing aptamers for cadmium (Cd2+), the common toxic heavy metal contaminant in food, cannot meet the requirements for detecting Cd2+ in rapid detection methods. In previous work, we found that coupling aptamer-peptide conjugates (APCs) with peptides and aptamers can provide a less disruptive method with a significantly improved affinity. Moreover, we found that the spatial conformation of aptamers and peptides is crucial for obtaining proper affinity in APC. Therefore, we describe a simple design strategy to obtain a series of APCs with different affinities by designing peptide orientations (N-terminal, C-terminal). The best affinity was found for APC(C1-N) with a binding constant (Ka) of 2.23 × 106 M-1, indicating that the APC(C1-N) affinity was significantly increased by 829.17% over aptamer. Finally, a rolling-circle amplification (RCA)-coupled ratio fluorescence-based biosensor for Cd2+ detection was established with a detection limit of 0.0036 nM, which has great potential for practical aquatic product detection.
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  • 文章类型: Journal Article
    最近,由于良好的钙生物利用度,由各种食物制成的肽-钙螯合物已经出现。猴头菌,一种可食用的真菌,富含具有高比例钙结合氨基酸的蛋白质。因此,蘑菇是制备肽钙螯合物的良好来源。在这里,研究了水解具有良好钙结合率(CBR)的猴头菌肽(HP)的条件,随后优化了HP-钙螯合物(HP-Ca)的制备工艺。此外,对新螯合物的结构进行了表征,并评估了胃肠道稳定性和钙吸收。选择木瓜蛋白酶和2h的水解时间用于制备猴头菌肽,和条件(pH8.5,温度55°C,时间40分钟,肽/CaCl2质量比4:1)是制备HP-Ca的最佳条件。在这种情况下,螯合物含有6.79±0.13%的钙。形貌和能谱(EDS)分析表明,HP-Ca具有疏松、多孔,具有明显的钙元素信号。紫外-可见(UV)吸收和傅里叶变换红外光谱(FT-IR)分析表明,钙可能通过与酸性氨基酸的游离-COO-和酰胺的C=O相互作用而与HP螯合。HP-Ca对刺激的胃肠消化表现出良好的稳定性。此外,HP-Ca显著改善了Caco-2上皮细胞对钙的吸收。因此,HP-Ca是一种有前途的钙补充剂,具有高的钙生物利用度。
    Recently, owing to the good calcium bioavailability, peptide-calcium chelates made of various foods have been emerging. Hericium erinaceus, an edible fungus, is rich in proteins with a high proportion of calcium-binding amino acids. Thus, mushrooms serve as a good source to prepare peptide-calcium chelates. Herein, the conditions for hydrolyzing Hericium erinaceus peptides (HP) with a good calcium-binding rate (CBR) were investigated, followed by the optimization of HP-calcium chelate (HP-Ca) preparation. Furthermore, the structure of the new chelates was characterized along with the evaluation of gastrointestinal stability and calcium absorption. Papain and a hydrolysis time of 2 h were selected for preparing Hericium erinaceus peptides, and the conditions (pH 8.5, temperature 55°C, time 40 min, and mass ratio of peptide/CaCl2 4:1) were optimal to prepare HP-Ca. Under this condition, the chelates contained 6.79 ± 0.13% of calcium. The morphology and energy disperse spectroscopy (EDS) analysis showed that HP-Ca was loose and porous, with an obvious calcium element signal. The ultraviolet-visible (UV) absorption and Fourier transform infrared spectroscopy (FT-IR) analysis indicated that calcium possibly chelates to HP via interaction with free -COO- from acidic amino acids and C = O from amide. HP-Ca displayed good stability against stimulated gastrointestinal digestion. Moreover, HP-Ca significantly improved the calcium absorption by Caco-2 epithelial cells. Thus, HP-Ca is a promising Ca supplement with high calcium bioavailability.
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  • 文章类型: Journal Article
    目前,铁结合蛋白转铁蛋白(TF)与NP的结合及其相互作用机制尚未完全阐明。这里,我们通过透析研究了纳米聚苯乙烯塑料(PS-NP)诱导的TF中Fe离子的构象依赖性释放,ICP-MS,多光谱技术,和计算模拟。结果表明,PS-NPs结合后,TF中游离Fe离子的释放被激活,显示出明显的剂量效应相关性。PS-NP结合可以诱导TF多肽链和骨架的展开和松动。除此之外,我们发现TF二级结构被破坏了,从而引起TF蛋白错误折叠和变性。并行,PS-NP与发色团相互作用,导致荧光增敏效应的发生和周围芳香氨基酸微环境的破坏。此外,PS-NP的结合诱导了PS-NP-TF系统中新聚集体的形成。进一步的模拟表明,PS-NP表现出与连接C-叶和N-叶的铰链区结合的偏好,负责TF的Fe离子释放和结构改变。这一发现为通过NP诱导的构象和结构变化调节铁负载TF的Fe离子释放提供了新的理解。
    Currently, the binding of iron-binding protein transferrin (TF) with NPs and their interaction mechanisms have not been completely elucidated yet. Here, we probed the conformation-dependent release of Fe ions from TF induced by nano-sized polystyrene plastics (PS-NPs) using dialysis, ICP-MS, multi-spectroscopic techniques, and computational simulation. The results showed that the release of free Fe ions from TF was activated after PS-NPs binding, which displayed a clear dose-effect correlation. PS-NPs binding can induce the unfolding and loosening of polypeptide chain and backbone of TF. Alongside this we found that the TF secondary structure was destroyed, thereby causing TF protein misfolding and denaturation. In parallel, PS-NPs interacted with the chromophores, resulting in the occurrence of fluorescence sensitization effects and the disruption of the surrounding micro-environment of aromatic amino acids. Also, the binding of PS-NPs induced the formation of new aggregates in the PS-NPs-TF system. Further simulations indicated that PS-NPs exhibited a preference for binding to the hinge region that connects the C-lobe and N-lobe, which is responsible for the Fe ions release and structural alterations of TF. This finding provides a new understanding about the regulation of the release of Fe ions of iron-loaded TF through NPs-induced conformational and structural changes.
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  • 文章类型: Journal Article
    镉(Cd(II))和砷酸盐(As(V))的共存污染长期以来一直是一个环境问题。生物炭,具有可调功能的多孔碳质材料,已用于修复受污染的土壤。然而,对于生物炭工程环境中多种金属同时隔离的动态量化和机理理解仍然具有挑战性,尤其是在阴离子存在的情况下。在这项研究中,将水铁矿与生物炭共沉淀,以研究水铁矿-生物炭复合材料如何影响重金属的命运,特别是在Cd(II)和As(V)共存时。在同时含有Cd(II)和As(V)的溶液体系中,水铁矿-生物炭复合材料对Cd(II)和As(V)的最大吸附能力达到82.03µmol/g和531.53µmol/g,分别,远高于纯生物炭(Cd(II)为26.90µmol/g,As(V)和水铁矿(Cd(II)为42.26µmol/g,和248.25µmol/g的As(V))。在As(V)存在下Cd(II)吸附增加,可能是由于在存在As(V)的情况下复合表面电荷的变化,生物炭增加了水铁矿的分散性。进一步的微观和机理结果表明,Cd(II)与生物炭和水铁矿络合,在Cd(II)和As(V)共存体系中,As(V)主要与水铁矿络合。水铁矿对Cd(II)和As(V)的共吸附至关重要。本研究揭示的不同分布模式有助于更深入地了解自然环境中阳离子和阴离子的行为。
    The coexistence of cadmium (Cd(II)) and arsenate (As(V)) pollution has long been an environmental problem. Biochar, a porous carbonaceous material with tunable functionality, has been used for the remediation of contaminated soils. However, it is still challenging for the dynamic quantification and mechanistic understanding of the simultaneous sequestration of multi-metals in biochar-engineered environment, especially in the presence of anions. In this study, ferrihydrite was coprecipitated with biochar to investigate how ferrihydrite-biochar composite affects the fate of heavy metals, especially in the coexistence of Cd(II) and As(V). In the solution system containing both Cd(II) and As(V), the maximum adsorption capacities of ferrihydrite-biochar composite for Cd(II) and As(V) reached 82.03 µmol/g and 531.53 µmol/g, respectively, much higher than those of the pure biochar (26.90 µmol/g for Cd(II), and 40.24 µmol/g for As(V)) and ferrihydrite (42.26 µmol/g for Cd(II), and 248.25 µmol/g for As(V)). Cd(II) adsorption increased in the presence of As(V), possibly due to the changes in composite surface charge in the presence of As(V), and the increased dispersion of ferrihydrite by biochar. Further microscopic and mechanistic results showed that Cd(II) complexed with both biochar and ferrihydrite, while As(V) was mainly complexed by ferrihydrite in the Cd(II) and As(V) coexistence system. Ferrihydrite posed vital importance for the co-adsorption of Cd(II) and As(V). The different distribution patterns revealed by this study help to a deeper understanding of the behaviors of cations and anions in the natural environment.
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  • 文章类型: Journal Article
    研究了小麦麸皮中不溶性膳食纤维(IDF)对淀粉体外消化的影响。分析了IDF对α-淀粉酶的抑制动力学,并讨论了其潜在机制。消化结果表明,IDF显著延缓了淀粉的消化,降低了消化速率和可消化淀粉含量。酶抑制动力学表明IDF是α-淀粉酶的混合型抑制剂,因为IDF能结合α-淀粉酶,共聚焦激光扫描显微镜证明。荧光猝灭和紫外-可见吸收实验证实了这一点,发现IDF导致α-淀粉酶的静态荧光猝灭,主要通过范德华力和/或氢键。这种相互作用诱导了α-淀粉酶二级结构的变化,显示更多的松动和折叠结构。这可能会阻止酶的活性位点捕获底物,导致α-淀粉酶活性降低。这些结果将阐明在功能性食品中利用IDF来管理餐后血糖。
    This study investigated effects of insoluble dietary fiber (IDF) from wheat bran on starch digestion in vitro, analyzed the inhibition kinetics of IDF toward α-amylase and discussed the underlying mechanisms. Digestion results showed IDF significantly retarded starch digestion with reduced digestion rate and digestible starch content. Enzyme inhibition kinetics indicated IDF was a mixed-type inhibitor to α-amylase, because IDF could bind α-amylase, as evidenced by confocal laser scanning microscopy. Fluorescence quenching and UV-vis absorption experiments conformed this, found IDF led to static fluorescence quenching of α-amylase, mainly through van der Waals and/or hydrogen bonding forces. This interaction induced alternations in α-amylase secondary structure, showing more loosening and misfolding structures. This may prevent the active site of enzyme from capturing substrates, contributing to reduced α-amylase activity. These results would shed light on the utilization of IDF in functional foods for the management of postprandial blood glucose.
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  • 文章类型: Journal Article
    铅污染是食品安全的主要问题,因此,已经开发了许多铅检测方法,尤其是基于适体的生物传感器。然而,这些传感器的灵敏度和环境耐受性需要改进。不同类型识别元件的组合是提高生物传感器检测灵敏度和环境耐受性的有效途径。这里,我们提供了一种新颖的识别元素,适体-肽缀合物(APC),以实现增强的Pb2+亲和力。通过点击化学从Pb2+适体和肽合成APC。通过等温滴定量热法(ITC)研究了APC与Pb2+的结合性能和环境耐受性;结合常数(Ka)为1.76*106M-1,表明APC的亲和力比适体和肽分别提高了62.96%和802.56%。分别。此外,APC表现出比适体和肽更好的抗干扰(K+)。通过分子动力学(MD)模拟,我们发现APC与Pb2+之间更多的结合位点和更强的结合能是APC与Pb2+之间亲和力更高的原因。最后,合成了羧基荧光素(FAM)标记的APC荧光探针,建立了Pb2+的荧光检测方法。计算FAM-APC探针的检测极限为12.45nM。该检测方法也应用于梭子蟹,在实际食品基质检测中显示出巨大的潜力。
    Lead contamination is a major concern in food safety and, as such, many lead detection methods have been developed, especially aptamer-based biosensors. However, the sensitivity and environmental tolerance of these sensors require improvement. A combination of different types of recognition elements is an effective way to improve the detection sensitivity and environmental tolerance of biosensors. Here, we provide a novel recognition element, an aptamer-peptide conjugate (APC), to achieve enhanced affinity of Pb2+. The APC was synthesized from Pb2+ aptamers and peptides through clicking chemistry. The binding performance and environmental tolerance of APC with Pb2+ was studied through isothermal titration calorimetry (ITC); the binding constant (Ka) was 1.76*106 M-1, indicating that the APC\'s affinity was increased by 62.96% and 802.56% compared with the aptamers and peptides, respectively. Besides, APC demonstrated better anti-interference (K+) than aptamer and peptide. Through the molecular dynamics (MD) simulation, we found that more binding sites and stronger binding energy between APC with Pb2+are the reasons for higher affinity between APC with Pb2+. Finally, a carboxyfluorescein (FAM)-labeled APC fluorescent probe was synthesized and a fluorescent detection method for Pb2+ was established. The limit of detection of the FAM-APC probe was calculated to be 12.45 nM. This detection method was also applied to the swimming crab and showed great potential in real food matrix detection.
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  • 文章类型: Journal Article
    气体疗法已被证明是癌症的有希望和有利的治疗选择。研究表明,一氧化氮(NO)是结构上最小的重要气体分子之一,具有抑制癌症的巨大潜力。然而,它的使用存在争议和担忧,因为它在肿瘤中的水平表现出相反的生理效应。因此,NO的抗癌机制是癌症治疗的关键,合理设计的NO递送系统对于NO生物医学应用的成功至关重要。本文综述了NO的内源性产生,它的生理机制,NO在肿瘤治疗中的应用,和用于输送NO供体的纳米输送系统。此外,它简要回顾了从不同纳米颗粒递送NO的挑战以及与其联合治疗策略相关的问题.各种NO递送平台的优点和挑战被概括为可能转化为临床应用。
    Gas therapy has been proven to be a promising and advantageous treatment option for cancers. Studies have shown that nitric oxide (NO) is one of the smallest structurally significant gas molecules with great potential to suppress cancer. However, there is controversy and concern about its use as it exhibits the opposite physiological effects based on its levels in the tumor. Therefore, the anti-cancer mechanism of NO is the key to cancer treatment, and rationally designed NO delivery systems are crucial to the success of NO biomedical applications. This review summarizes the endogenous production of NO, its physiological mechanisms of action, the application of NO in cancer treatment, and nano-delivery systems for delivering NO donors. Moreover, it briefly reviews challenges in delivering NO from different nanoparticles and the issues associated with its combination treatment strategies. The advantages and challenges of various NO delivery platforms are recapitulated for possible transformation into clinical applications.
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  • 文章类型: Journal Article
    用小分子靶向RNA是当前药物化学的主要挑战,并且能够选择性地与RNA靶标相互作用的原始支架的鉴定和设计仍然很困难。基于经典的药物化学策略(基于片段的药物设计,动态组合化学,HTS或DNA编码库)以及先进的结构生物学和生物化学方法(例如X射线,cryo-EM,NMR,或形状)。这里,我们报告了从头设计,合成,以及使用直接和可持续的化学结合分子对接以及生物化学和生物物理研究对RNA配体进行生物学评估,这使我们能够鉴定出用于RNA结合的新型药效团。具体来说,我们专注于靶向微小RNA-21的生物发生,已知的癌基因。这不仅使我们获得了有希望的抑制剂,而且使我们更好地理解了小分子化合物与RNA靶标之间形成的相互作用,为合理设计具有潜在抗癌活性的有效抑制剂铺平了道路。
    Targeting RNA with small molecules is a major challenge of current medicinal chemistry, and the identification and design of original scaffolds able to selectively interact with an RNA target remains difficult. Various approaches have been developed based on classical medicinal chemistry strategies (fragment-based drug design, dynamic combinatorial chemistry, HTS or DNA-encoded libraries) as well as on advanced structural biology and biochemistry methodologies (such as X-ray, cryo-EM, NMR, or SHAPE). Here, we report the de novo design, synthesis, and biological evaluation of RNA ligands by using a straightforward and sustainable chemistry combined with molecular docking and biochemical and biophysical studies that allowed us to identify a novel pharmacophore for RNA binding. Specifically, we focused on targeting the biogenesis of microRNA-21, the well-known oncogene. This led us not only to promising inhibitors but also to a better understanding of the interactions between the small-molecule compounds and the RNA target paving the way for the rational design of efficient inhibitors with potential anticancer activity.
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  • 文章类型: Journal Article
    沿海湿地中潜在有毒金属(Pb和Cd)的过度积累是威胁湿地生态系统的主要因素之一。然而,地下水位深度(WTD)对沉积物中潜在有毒金属的风险和结合机制的影响尚不清楚。这里,使用新开发的基于化学提取方法和高分辨率光谱学的策略,对从典型沿海湿地获得的不同WTD的沉积物进行了评估。我们的发现表明,沿海湿地的WTD波动频繁,铅的平均富集因子被归类为次要的,而Cd富集被归类为中度。高分辨率光谱学技术还表明,有机官能团和部分无机化合物(例如,Fe-O/Si-O)在Pb和Cd与表层沉积物的结合中起着至关重要的作用。此外,矿物成分而不是有机基团主要与底部沉积物中的这些金属结合。总的来说,我们的发现为沉积物中潜在有毒金属的潜在健康影响和结合特性提供了关键见解,以及它们在微尺度变化的沉积物深度下的动态行为。
    The excessive accumulation of potentially toxic metals (Pb and Cd) in coastal wetlands is among the main factors threatening wetland ecosystems. However, the effects of water table depth (WTD) on the risk and binding mechanisms of potentially toxic metals in sediments remain unclear. Here, sediments from different WTD obtained from a typical coastal wetland were evaluated using a newly developed strategy based on chemical extraction methods coupled with high-resolution spectroscopy. Our findings indicated that the WTD of the coastal wetland fluctuates frequently and the average enrichment factor for Pb was categorized as minor, whereas Cd enrichment was categorized as moderate. High-resolution spectroscopy techniques also demonstrated that organic functional groups and partly inorganic compounds (e.g., Fe-O/Si-O) played a vital role in the binding of Pb and Cd to surface sediments. Additionally, mineral components rather than organic groups were mainly bound to these metals in the bottom sediments. Collectively, our findings provide key insights into the potential health effects and binding characteristics of potentially toxic metals in sediments, as well as their dynamic behavior under varying sediment depths at a microscale.
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