bidirectional Mendelian randomization

双向孟德尔随机化
  • 文章类型: Journal Article
    先前的研究提出了肺癌和炎症细胞因子之间的潜在关联,然而具体的因果关系仍不清楚,尤其是各种肺癌病理。这项研究利用双向孟德尔随机化(MR)来探索这些因果关系,揭示新颖的见解。我们的研究揭示了肺癌每种亚型的独特炎性细胞因子谱,并确定了可以改进诊断和治疗方法的潜在生物标志物。我们应用了两个样本孟德尔随机化,利用来自三项广泛的全基因组关联研究(GWAS)的遗传变异数据,重点关注不同类型的肺癌(肺腺癌:欧洲血统健康个体的1590例和314,193例对照;肺鳞状细胞癌:欧洲血统个体的1510例和314,193例对照;小细胞肺癌:欧洲血统个体的717例和314,193例对照).还包括来自8,293名健康参与者的炎性细胞因子的单独GWAS总结。利用方差逆加权法检验因果关系,通过多重敏感性分析证实了稳健性,包括MR-Egger,加权中位数,MR-PRESSO我们的分析显示,IL_1RA水平升高与肺腺癌的风险增加有关(OR:1.29,95%CI:1.02-1.64,p=0.031)。而较高的MCP_1_MCAF水平与肺鳞状细胞癌风险降低相关(OR:0.77,95%CI:0.61-0.98,p=0.031)。此外,IL_10、IL_13、TRAIL水平与肺鳞癌发病风险呈正相关(IL_10:OR:1.27,95%CI:1.06~1.53,p=0.012;IL_13:OR:1.15,95%CI:1.06~1.53,p=0.036;TRAIL:OR:1.15,95%CI:1.06~1.53,p=0.043)。炎性细胞因子水平与小细胞肺癌发展之间没有发现相关性,而SDF_1A和B-NGF与该类型癌症的风险增加相关(SDF_1A:OR:1.13,95%CI:1.05-1.21,p=0.001;B-NGF:OR:1.13,95%CI:1.01-1.27,p=0.029)。在41种循环炎性细胞因子与肺腺癌或鳞状细胞癌的发展之间没有观察到显着关系。我们的发现表明特定的炎症细胞因子与不同类型的肺癌之间存在明显的关联。IL_1RA水平升高是肺腺癌的风险标志物,而较高的MCP_1_MCAF水平似乎对肺鳞状细胞癌具有保护作用。相反,IL_10,IL_13和TRAIL水平升高与肺鳞状细胞癌的风险增加有关。SDF_1A和B-NGF与小细胞肺癌的关系突出了肿瘤发展中炎症标志物的复杂性。这项研究提供了对炎症细胞因子在肺癌中的作用的细致理解。强调他们在完善诊断和治疗策略方面的潜力。
    Prior research has proposed a potential association between lung cancer and inflammatory cytokines, yet the specific causal relationship remains unclear, especially across various lung cancer pathologies. This study utilized bidirectional Mendelian randomization (MR) to explore these causal connections, unveiling novel insights. Our research revealed distinctive inflammatory cytokine profiles for each subtype of lung cancer and identified potential biomarkers that could refine diagnostic and therapeutic approaches. We applied two-sample Mendelian randomization, leveraging genetic variance data from three extensive genome-wide association studies (GWAS) focusing on different lung cancer types (lung adenocarcinoma: 1590 cases and 314,193 controls of healthy individuals of European descent; lung squamous cell carcinoma: 1510 cases and 314,193 controls of European ancestry; small cell lung cancer: 717 cases and 314,193 controls of European ancestry). A separate GWAS summary on inflammatory cytokines from 8,293 healthy participants was also included. The inverse variance weighting method was utilized to examine causal relationships, with robustness confirmed through multiple sensitivity analyses, including MR-Egger, weighted median, and MR-PRESSO. Our analysis revealed that elevated levels of IL_1RA were associated with an increased risk of lung adenocarcinoma (OR: 1.29, 95% CI: 1.02-1.64, p = 0.031), while higher MCP_1_MCAF levels correlated with a decreased risk of lung squamous cell carcinoma (OR: 0.77, 95% CI: 0.61-0.98, p = 0.031). Furthermore, IL_10, IL_13, and TRAIL levels were positively associated with lung squamous cell carcinoma risk (IL_10: OR: 1.27, 95% CI: 1.06-1.53, p = 0.012; IL_13: OR: 1.15, 95% CI: 1.06-1.53, p = 0.036; TRAIL: OR: 1.15, 95% CI: 1.06-1.53, p = 0.043). No association was found between inflammatory cytokine levels and small cell lung cancer development, whereas SDF_1A and B-NGF were linked to an increased risk of this cancer type (SDF_1A: OR: 1.13, 95% CI: 1.05-1.21, p = 0.001; B-NGF: OR: 1.13, 95% CI: 1.01-1.27, p = 0.029). No significant relationship was observed between the 41 circulating inflammatory cytokines and lung adenocarcinoma or squamous cell carcinoma development. Our findings indicate distinct associations between specific inflammatory cytokines and different types of lung cancer. Elevated IL_1RA levels are a risk marker for lung adenocarcinoma, whereas higher MCP_1_MCAF levels appear protective against lung squamous cell carcinoma. Conversely, elevated levels of IL_10, IL_13, and TRAIL are linked with an increased risk of lung squamous cell carcinoma. The relationships of SDF_1A and B-NGF with small-cell lung cancer highlight the complexity of inflammatory markers in cancer development. This study provides a nuanced understanding of the role of inflammatory cytokines in lung cancer, underscoring their potential in refining diagnosis and treatment strategies.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    以前的流行病学研究报道了干燥综合征(SS)和帕金森病(PD)之间的关联;然而,这种关系的因果关系和方向尚不清楚。在这项研究中,我们旨在通过双向孟德尔随机化(MR)研究遗传决定的SS与PD风险之间的因果关系.
    用作暴露的Sjögren综合征的汇总统计数据是从FinnGen数据库获得的,包括1,290例病例和213,145例对照。PD的结果数据集来自英国生物库数据库,包括6,998例病例和415,466例对照。各种MR方法,例如逆方差加权(IVW),孟德尔随机化Egger回归(MR-Egger),加权中位数(WM),简单模式,加权模式,MR-多效性残差和和离群值(MR-PRESSO),和稳健的调整后的配置文件得分(RAPS),用于研究SS对PD的因果影响。进行了仪器变量强度评估和灵敏度分析,以确保结果的可靠性。此外,进行反向MR分析以检查PD对SS的因果影响.
    WM,IVW,RAPS和MR-PRESSO方法表明,遗传预测的SS与PD风险降低之间存在显着关联(比值比ORWM=0.9988,ORIVW=0.9987,ORRAPS=0.9987,ORMR-PRESSO=0.9987,P<0.05)。根据MR-Egger和MR-PRESSO测试,所有MR分析均未显示水平多效性证据(P>0.05),MR-Egger和IVW方法的测试结果没有统计学上的异质性。留一灵敏度分析证实了SS和PD之间因果关系的稳健性。此外,反向MR分析不支持PD对SS的任何因果影响.
    我们的MR研究支持SS与PD风险降低之间的潜在因果关系。需要进一步广泛的临床研究和全面的基础研究来阐明SS和PD之间的潜在机制。
    UNASSIGNED: Previous epidemiological studies have reported an association between Sjögren\'s syndrome (SS) and Parkinson\'s disease (PD); however, the causality and direction of this relationship remain unclear. In this study, we aimed to investigate the causal relationship between genetically determined SS and the risk of PD using bidirectional Mendelian randomization (MR).
    UNASSIGNED: Summary statistics for Sjögren\'s syndrome used as exposure were obtained from the FinnGen database, comprising 1,290 cases and 213,145 controls. The outcome dataset for PD was derived from the United Kingdom Biobank database, including 6,998 cases and 415,466 controls. Various MR methods, such as inverse variance weighted (IVW), Mendelian randomization Egger regression (MR-Egger), weighted median (WM), simple mode, weighted mode, MR-pleiotropy residual sum and outlier (MR-PRESSO), and robust adjusted profile score (RAPS), were employed to investigate the causal effects of SS on PD. Instrumental variable strength evaluation and sensitivity analyses were conducted to ensure the reliability of the results. In addition, reverse MR analysis was performed to examine the causal effects of PD on SS.
    UNASSIGNED: The WM, IVW, RAPS and MR-PRESSO methods demonstrated a significant association between genetically predicted SS and reduced risk of PD (odds ratio ORWM = 0.9988, ORIVW = 0.9987, ORRAPS = 0.9987, ORMR-PRESSO = 0.9987, respectively, P < 0.05). None of the MR analyses showed evidence of horizontal pleiotropy (P > 0.05) based on the MR-Egger and MR-PRESSO tests, and there was no statistical heterogeneity in the test results of the MR-Egger and IVW methods. The leave-one-out sensitivity analysis confirmed the robustness of the causal relationship between SS and PD. Furthermore, reverse MR analysis did not support any causal effects of PD on SS.
    UNASSIGNED: Our MR study supports a potential causal association between SS and a reduced risk of PD. Further extensive clinical investigations and comprehensive fundamental research are warranted to elucidate the underlying mechanisms linking SS and PD.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    在存在双向关系的情况下对因果效应进行建模方面,涉及反馈回路的结构方程模型(SEM)可能比标准工具变量估计器具有优势。在以下注释中,我们表明,在单个“暴露”和“结果”变量的情况下,使用具有简单双向线性反馈回路的SEM建模关系在一致性方面没有传统工具变量估计器的优势(即两种方法都产生因果效应的一致估计,前提是在两个方向上获得因果估计)。在有限样本的情况下,传统的IV估计器和SEM在我们检查的许多条件下表现出相似的能力,尽管哪种方法效果最好取决于变量之间的残差相关性和仪器的强度。特别是,SEM的功效对变量之间的残差相关性不敏感,而Wald估计器/2SLS的功率相对于SEM改善(恶化),因为假设暴露对结果具有正的因果影响,残差相关性的大小增加(降低)。SEM的功效相对于Wald估计器/2SLS有所提高,因为这些仪器解释了“结果”变量中更多的残差方差。
    Structural equation models (SEMs) involving feedback loops may offer advantages over standard instrumental variables estimators in terms of modelling causal effects in the presence of bidirectional relationships. In the following note, we show that in the case of a single \"exposure\" and \"outcome\" variable, modelling relationships using a SEM with a simple bidirectional linear feedback loop offers no advantage over traditional instrumental variables estimators in terms of consistency (i.e. both approaches yield consistent estimates of the causal effect, provided that causal estimates are obtained in both directions). In the case of finite samples, traditional IV estimators and SEM exhibited similar power across many of the conditions we examined, although which method performed best depended on the residual correlation between variables and the strength of the instruments. In particular, the power of SEM was insensitive to the residual correlation between variables, whereas the power of the Wald estimator/2SLS improved (deteriorated) relative to SEM as the magnitude of the residual correlation increased (decreased) assuming a positive causal effect of the exposure on the outcome. The power of SEM improved relative to the Wald estimator/2SLS as the instruments explained more residual variance in the \"outcome\" variable.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    前列腺炎代表男性泌尿生殖系统的常见疾病,显著影响男性患者的身心健康。虽然许多研究表明免疫细胞活性和前列腺炎之间存在潜在的联系,免疫细胞在前列腺炎中的确切因果作用仍不确定。本研究旨在使用双向孟德尔随机化方法探讨免疫细胞特征与前列腺炎之间的因果关系。本研究利用来自公共GWAS数据库的数据,并采用双向孟德尔随机化分析来研究免疫细胞与前列腺炎之间的因果关系。731免疫细胞特征与前列腺炎之间的因果关系主要通过方差逆加权(IVW)进行研究。辅以MR-Egger回归,一个简单的模型,加权中位数法,和加权模型。最终,结果进行了敏感性分析,以评估异质性,水平多效性,免疫细胞和前列腺炎中单核苷酸多态性(SNP)的稳定性。MR分析显示17个免疫细胞对前列腺炎表现出显著的因果效应。相比之下,反向MR的发现表明前列腺炎与13种免疫细胞之间存在显着因果关系。我们的研究利用双向孟德尔随机化建立特定免疫细胞表型和前列腺炎之间的因果关系,强调免疫系统行为和疾病之间的相互影响。我们的研究结果表明,有针对性的治疗方法以及纳入不同人群对更广泛的验证和个性化治疗策略的重要性。
    Prostatitis represents a common disease of the male genitourinary system, significantly impacting the physical and mental health of male patients. While numerous studies have suggested a potential link between immune cell activity and prostatitis, the exact causal role of immune cells in prostatitis remains uncertain. This study aims to explore the causal relationship between immune cell characteristics and prostatitis using a bidirectional Mendelian randomization approach. This study utilizes data from the public GWAS database and employs bidirectional Mendelian randomization analysis to investigate the causal relationship between immune cells and prostatitis. The causal relationship between 731 immune cell features and prostatitis was primarily investigated through inverse variance weighting (IVW), complemented by MR-Egger regression, a simple model, the weighted median method, and a weighted model. Ultimately, the results underwent sensitivity analysis to assess the heterogeneity, horizontal pleiotropy, and stability of Single Nucleotide Polymorphisms (SNPs) in immune cells and prostatitis. MR analysis revealed 17 immune cells exhibiting significant causal effects on prostatitis. In contrast, findings from reverse MR indicated a significant causal relationship between prostatitis and 13 immune cells. Our study utilizes bidirectional Mendelian Randomization to establish causal relationships between specific immune cell phenotypes and prostatitis, highlighting the reciprocal influence between immune system behavior and the disease. Our findings suggest targeted therapeutic approaches and the importance of including diverse populations for broader validation and personalized treatment strategies.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    炎性细胞因子(IC)在勃起功能障碍(ED)中起重要作用。以前的研究表明,大多数ED患者有高水平的肿瘤坏死因子-α(TNF-α),白细胞介素-6(IL-6)和白细胞介素-8(IL-8)。使用孟德尔随机化(MR)方法研究了41个IC和ED之间的因果关系。
    41个IC的单核苷酸多态性(SNP)暴露数据来自8293个受试者的全基因组关联研究(GWAS)。同时,FINNGENR9数据库提供了包含2205例ED患者和164104例对照的ED结局数据.MR-Egger(ME),方差逆加权(IVW),和加权中位数(WM)用于进行MR研究,以IVW为主要标准。
    从遗传的角度来看,干扰素诱导蛋白-10(IP-10)水平的升高显著增加ED的风险(P=0.043,比值比(OR)=1.269,95%置信区间(95CI):1.007-1.600),而白细胞介素-1受体拮抗剂(IL-1RA)的增加显着降低了ED的风险(P=0.037,OR=0.768,95CI:0.600-0.984)。同时,IP-10(p=0.099)和IL-1RA(p=0.135)在反向MR分析中未能证明因果关系。
    IC水平的变化将显著影响ED的风险,特别是IP-10作为ED的风险成分和IL-1RA作为ED的保护成分。在未来,通过对特定炎症因子的干预,可以实现对ED的针对性治疗和预防。
    UNASSIGNED: Inflammatory cytokines (ICs) play an important role in erectile dysfunction (ED). Previous studies have demonstrated that most ED patients have high levels of tumor necrosis factor-α (TNF-α), interleukin-6 (IL-6) and interleukin-8 (IL-8). The causality between 41 ICs and ED is investigated using the Mendelian randomization (MR) approach.
    UNASSIGNED: Single nucleotide polymorphisms (SNPs) exposure data of 41 ICs came from a genome-wide association study (GWAS) of 8293 subjects. At the same time, the FINNGEN R9 database provided the ED outcome data containing 2205 ED patients and 164104 controls. MR-Egger (ME), inverse variance weighting (IVW), and weighted median (WM) were applied to conduct the MR study and IVW was taken as the main criterion.
    UNASSIGNED: From a genetic perspective, the increase of interferon-inducible protein-10 (IP-10) level significantly increased the risk of ED (P=0.043, odds ratio (OR)=1.269, 95% confidence interval (95%CI): 1.007-1.600), while the increase of interleukin-1 receptor antagonist (IL-1RA) markedly decreased the risk of ED (P=0.037, OR=0.768, 95%CI: 0.600-0.984). Meanwhile, IP-10 (p=0.099) and IL-1RA (p=0.135) failed to demonstrate causality in reverse MR analysis.
    UNASSIGNED: Changes in ICs levels will significantly affect the risk of ED, especially IP-10 as a risk component for ED and IL-1RA as a protective component for ED. In the future, we can achieve targeted treatment and prevention of ED by intervening with specific inflammatory factors.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    强直性脊柱炎(AS)是一种自身免疫性疾病,影响数百万人。免疫细胞已被认为在AS的发病机理中起着至关重要的作用。然而,他们的关系还没有得到充分的探索。
    我们选择采用孟德尔随机化(MR)来研究免疫细胞与AS之间的潜在相关性。我们从最新的全基因组关联研究(GWAS)中获取了免疫细胞的数据。我们从FinnGen联盟获得了AS的数据。我们全面的单变量MR分析涵盖了731个免疫细胞,以探讨其与AS的潜在因果关系。主要分析方法为逆方差加权(IVW)。此外,我们使用Cochran的Q检验和MR-Egger截距检验来评估多效性和异质性的存在。我们使用留一法检验了我们的结果是否会受到单个单核苷酸多态性(SNP)的影响。我们进行了双向MR以研究反向关系。我们还应用多变量MR来降低免疫细胞之间的潜在影响。
    总的来说,我们的单变量MR分析显示8个与AS相关的免疫细胞.其中,四种免疫细胞增加了AS的风险,而四种免疫细胞被鉴定为AS的保护因子。然而,Bonferroni检验仅证实了一个危险因素和一个保护因素,其显著性水平为p<6.84E-05。效应记忆CD8+T细胞上的CD8可增加AS的风险(p:1.2302E-05,OR:2.9871,95CI:1.8289-4.8786)。CD33dimHLADR+CD11b+可以降低AS的风险(p:1.2301E-06,OR:0.5446,95CI:0.4260-0.6962)。我们还利用双向MR鉴定了CD39激活的CD4调节性T细胞上的CD4与AS之间的双向关系。为了解决免疫细胞之间潜在的混杂问题,我们采用了多变量MR分析,这表明只有一个免疫细胞对AS有独立的作用。CD33dimHLADR+CD11b+可以降低AS的风险(p:2.113E-06,OR:0.0.5323,95CI:0.4210-0.6983)。我们的研究结果始终稳定可靠。
    我们的研究结果表明,免疫细胞和AS之间存在潜在的联系,这可以为未来的研究提供新的思路。然而,具体的基础机制需要进一步探索。
    UNASSIGNED: Ankylosing spondylitis (AS) is an autoimmune disease that affects millions of individuals. Immune cells have been recognized as having a crucial role in the pathogenesis of AS. However, their relationship has not been fully explored.
    UNASSIGNED: We chose to employ Mendelian randomization (MR) to investigate the potential correlation between immune cells and AS. We sourced the data on immune cells from the latest genome-wide association studies (GWASs). We obtained data on AS from the FinnGen consortium. Our comprehensive univariable MR analysis covered 731 immune cells to explore its potential causal relationship with AS. The primary analysis method was inverse-variance weighted (IVW). Additionally, we used Cochran\'s Q test and the MR-Egger intercept test to assess the presence of pleiotropy and heterogeneity. We examined whether our results could be influenced by individual single-nucleotide polymorphisms (SNPs) using the leave-one-out test. We conducted a bidirectional MR to investigate the reverse relationship. We also applied multivariable MR to decrease the potential influence between the immune cells.
    UNASSIGNED: Overall, our univariable MR analysis revealed eight immune cells associated with AS. Among these, four immune cells contributed to an increased risk of AS, while four immune cells were identified as protective factors for AS. However, the Bonferroni test confirmed only one risk factor and one protective factor with a significance level of p < 6.84E-05. CD8 on effector memory CD8+ T cell could increase the risk of AS (p: 1.2302E-05, OR: 2.9871, 95%CI: 1.8289-4.8786). HLA DR on CD33dim HLA DR+ CD11b+ could decrease the risk of AS (p: 1.2301E-06, OR: 0.5446, 95%CI: 0.4260-0.6962). We also identified a bidirectional relationship between CD4 on CD39+ activated CD4 regulatory T cells and AS utilizing the bidirectional MR. To address potential confounding among immune cells, we employed multivariable MR analysis, which revealed that only one immune cell had an independent effect on AS. HLA DR on CD33dim HLA DR+ CD11b+ could decrease the risk of AS (p: 2.113E-06, OR: 0.0.5423, 95%CI: 0.4210-0.6983). Our findings were consistently stable and reliable.
    UNASSIGNED: Our findings indicated a potential link between immune cells and AS, which could provide a new idea for future research. Nevertheless, the specific underlying mechanisms require further exploration.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    背景:主动脉瓣狭窄(AVS)是发达国家最常见的心脏瓣膜病变,发病机制与衰老密切相关。基于DNA甲基化的表观遗传时钟现在被认为是衰老过程和相关健康结果的高度准确的预测因子。本研究旨在通过双向孟德尔随机化(MR)分析来探索表观遗传时钟与AVS之间的因果关系。
    方法:表观遗传钟的全基因组关联研究统计摘要(HannumAge,HorvathAge,PhenoAge,和GrimAge)和AVS从爱丁堡DataShare(n=34,710)和FinnGen生物库(病例=9870,对照=402,311)获得并评估了重要的工具变量。使用逆方差加权(IVW)评估表观遗传时钟和AVS之间的因果关系,加权中位数(WM),和MR-Egger方法。多元分析(异质性分析,多效性分析,和敏感性分析)进行质量控制评估。
    结果:MR分析显示,HorvathAge和PhenoAge的表观遗传年龄加速与AVS的风险增加相关(通过IVW,HorvathAge:OR=1.043,P=0.016,OR=1.058,WMP=0.018;表型:OR=1.058,IVWP=0.005,OR=1.053,P=0.039,WM)。质量控制评估证明我们的发现是可靠和稳健的。然而,缺乏证据支持AVS与表观遗传衰老之间存在因果关系.
    结论:目前的MR分析揭示了表观遗传时钟之间的因果关系,尤其是火种和表型,AVS。需要进一步研究以阐明潜在的机制并制定潜在干预措施的策略。
    Aortic valve stenosis (AVS) is the most prevalent cardiac valve lesion in developed countries, and pathogenesis is closely related to aging. DNA methylation-based epigenetic clock is now recognized as highly accurate predictor of the aging process and associated health outcomes. This study aimed to explore the causal relationship between epigenetic clock and AVS by conducting a bidirectional Mendelian randomization (MR) analysis.
    Summary genome-wide association study statistics of epigenetic clocks (HannumAge, HorvathAge, PhenoAge, and GrimAge) and AVS were obtained and assessed for significant instrumental variables from Edinburgh DataShare (n = 34,710) and FinnGen biobank (cases = 9870 and controls = 402,311). The causal association between epigenetic clock and AVS was evaluated using inverse variance weighted (IVW), weighted median (WM), and MR-Egger methods. Multiple analyses (heterogeneity analysis, pleiotropy analysis, and sensitivity analysis) were performed for quality control assessment.
    The MR analysis showed that the epigenetic age acceleration of HorvathAge and PhenoAge was associated with an increased risk of AVS (HorvathAge: OR = 1.043, P = 0.016 by IVW, OR = 1.058, P = 0.018 by WM; PhenoAge: OR = 1.058, P = 0.005 by IVW, OR = 1.053, P = 0.039 by WM). Quality control assessment proved our findings were reliable and robust. However, there was a lack of evidence supporting a causal link from AVS to epigenetic aging.
    The present MR analysis unveiled a causal association between epigenetic clocks, especially HorvathAge and PhenoAge, with AVS. Further research is required to elucidate the underlying mechanisms and develop strategies for potential interventions.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    目标:目前,有多种证据表明肠道菌群与性激素的变化有关。相比之下,SHBG之间的因果关系,性激素的携带者,肠道微生物群还不清楚。
    方法:双向双样本孟德尔随机化(MR)分析用于检测SHBG与肠道微生物组之间的因果关系。从公共数据集获得肠道微生物组和SHBG的全基因组关联研究(GWAS)的汇总统计。方差反加权(IVW),加权中位数,加权模式,使用MR-Egger和简单模式方法进行MR分析。进行F统计量和敏感性分析以评估偏倚和可靠性。
    结果:当我们将肠道微生物组设定为暴露,将SHBG设定为结果时,我们确定了九种因果关系。在男性中,共形字符(PIVW=2.01×10-6),Ruminococus2(PIVW=3.40×10-5),Barnesiella(PIVW=2.79×10-2),放线菌(PIVW=3.25×10-2)和假杆菌组(PIVW=3.64×10-2)与较低的SHBG水平有关;α变形杆菌(PIVW=1.61×10-2)与较高的SHBG水平有关。在女性中,衣原体(PIVW=9.75×10-3)和DefluviitaleaceaeUCG011(PIVW=3.67×10-2)与较高的SHBG水平相关;维多利亚科(PIVW=2.23×10-2)与较低的SHBG水平相关。根据反向MR分析的结果,发现SHBG对肠道微生物群的三个显著因果效应。在男性中,多雷亚(PIVW=4.17×10-2)和梭菌(PIVW=4.36×10-2)与较高的SHBG水平相关。在女性中,衣原体(PIVW=7.44×10-4)与较高的SHBG水平相关。在双向双样本MR分析中未发现工具变量或水平多效性的明显异质性。
    结论:这项研究可能为肠道微生物组和性激素结合蛋白水平之间的因果关系提供新的见解。以及针对性激素异常变化等疾病的新治疗和预防策略。
    OBJECTIVE: Currently, there is a variety of evidence linking the gut microbiota to changes in sex hormones. In contrast, the causal relationship between SHBG, a carrier of sex hormones, and the gut microbiota is unclear.
    METHODS: Bidirectional two-sample Mendelian randomization (MR) analysis was used to detect the causal effect between SHBG and the gut microbiome. Summary statistics of genome-wide association studies (GWASs) for the gut microbiome and SHBG were obtained from public datasets. Inverse-variance weighting (IVW), weighted median, weighted mode, MR-Egger and simple mode methods were used to operate the MR analysis. F-statistics and sensitivity analyses performed to evaluate bias and reliability.
    RESULTS: When we set gut microbiome as exposure and SHBG as outcome, we identified nine causal relationships. In males, Coprobacter (PIVW = 2.01 × 10-6 ), Ruminococcus2 (PIVW = 3.40 × 10-5 ), Barnesiella (PIVW = 2.79 × 10-2 ), Actinobacteria (PIVW = 3.25 × 10-2 ) and Eubacterium fissicatena groups (PIVW = 3.64 × 10-2 ) were associated with lower SHBG levels; Alphaproteobacteria (PIVW = 1.61 × 10-2 ) is associated with higher SHBG levels. In females, Lachnoclostridium (PIVW = 9.75 × 10-3 ) and Defluviitaleaceae UCG011 (PIVW = 3.67 × 10-2 ) were associated with higher SHBG levels; Victivallaceae (PIVW = 2.23 × 10-2 ) was associated with lower SHBG levels. According to the results of reverse MR analysis, three significant causal effect of SHBG was found on gut microbiota. In males, Dorea (PIVW = 4.17 × 10-2 ) and Clostridiales (PIVW = 4.36 × 10-2 ) were associated with higher SHBG levels. In females, Lachnoclostridium (PIVW = 7.44 × 10-4 ) was associated with higherr SHBG levels. No signifcant heterogeneity of instrumental variables or horizontal pleiotropy was found in bidirectional two-sample MR analysis.
    CONCLUSIONS: This study may provide new insights into the causal relationship between the gut microbiome and sex hormone-binding protein levels, as well as new treatment and prevention strategies for diseases such as abnormal changes in sex hormones.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    流行病学和实验证据已将慢性炎症与骨髓增殖性肿瘤(MPN)的病因联系起来。然而,目前尚不清楚与特定炎症生物标志物的遗传关联是因果还是偏倚.这项研究旨在评估双向孟德尔随机设计中C反应蛋白(CRP)和全身炎症调节剂对MPN的影响。与MPN的遗传关联来自公开可用的全基因组关联研究(GWAS),该研究包括1,086例和407,155个欧洲血统对照。此外,从两个关注CRP和细胞因子的GWASs中提取炎症数据.使用逆方差加权(IVW)方法探索暴露与结果之间的因果关系。为了确认最终结果,多重敏感性分析,包括MR-Egger,加权中位数,和MR多效性残差和和离群值(MR-PRESSO),同时被雇用。我们的结果表明,较低水平的巨噬细胞迁移抑制因子(IVW估计比值比[ORIVW]每个SD遗传细胞因子变化:0.641;95%置信区间[CI]:0.427-0.964;p=0.032)和较高水平的白介素-2受体α(lL2Rα,1.377,95%CI:1.006-1.883;p=0.046)与MPN风险增加相关。遗传预测的MPN与RANTES(IVW估计β:0.043,95%CI:0.002-0.084;p=0.039)和白介素10(IVW估计β:0.030,95%CI:0.001-0.060;p=0.041)的水平升高有关。本研究为CRP、全身炎症调节剂,MPN,以及对病因的新见解,预防,和MPN的预后。
    Epidemiological and experimental evidence has linked chronic inflammation to the etiology of myeloproliferative neoplasm (MPN). However, it remains unclear whether genetic associations with specific inflammatory biomarkers are causal or due to bias. This study aimed to assess the effect of C-reactive protein (CRP) and systemic inflammatory regulators on MPN within a bidirectional Mendelian randomization design. Genetic associations with MPN were derived from a publicly available genome-wide association study (GWAS) comprising 1,086 cases and 407,155 controls of European ancestry. Additionally, data on inflammation were extracted from two GWASs focusing on CRP and cytokines. The causal relationships between exposure and outcome were explored using the inverse variance weighted (IVW) method. To confirm the final results, multiple sensitivity analyses, including MR-Egger, weighted median, and MR-pleiotropy residual sum and outlier (MR-PRESSO), were simultaneously employed. Our results suggest that lower levels of macrophage-migration inhibitory factor (IVW estimate odds ratio [OR IVW] per SD genetic cytokines change: 0.641; 95% confidence interval [CI]: 0.427-0.964; p  = 0.032) and higher levels of interleukin-2 receptor α (lL2Rα, 1.377, 95% CI: 1.006-1.883; p  = 0.046) are associated with an increased risk of MPN. Genetically predicted MPN is related to increased levels of RANTES (IVW estimate β: 0.043, 95% CI: 0.002-0.084; p  = 0.039) and interleukin-10 (IVW estimate β: 0.030, 95% CI: 0.001-0.060; p  = 0.041). This study provides evidence for a causal relationship between CRP, systemic inflammatory regulators, and MPN, and new insights into the etiology, prevention, and prognosis of MPN.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    观察性研究表明2型糖尿病(T2DM)与结直肠癌(CRC)和炎症性肠病(IBD)之间存在关联。然而,这些关联之间的潜在因果关系和生物学机制尚不清楚.
    我们使用涉及欧洲个体的全基因组关联研究的汇总统计数据进行了双向孟德尔随机化(MR)分析。方差逆加权(IVW)方法是用于评估因果关系的主要方法。此外,我们申请了埃格先生,加权中位数,简单模式,和加权模式来评估结果的鲁棒性。使用MR-PRESSO识别并消除了异常值,而MR-Egger截距用于评估单核苷酸多态性(SNP)的水平多效性。使用CochraneQ检验评估异质性,敏感性分析采用留一法。计算F统计量以评估弱工具变量偏倚。最后,我们进行了一项生物信息学试验分析,以探讨T2DM和IBD/UC之间的潜在生物学机制.
    IVW结果显示T2DM显著降低IBD(OR=0.885,95%CI:0.818-0.958,P=0.002)和溃疡性结肠炎(UC)(OR=0.887,95%CI:0.812-0.968,P=0.007)的风险。尽管MREgger的95%CI,加权中位数,简单模式,加权模式很宽,他们的大部分估计与IVW的方向一致.尽管SNP之间存在显著的异质性,没有观察到水平多效性。留一法分析表明,去除每个SNP后,因果关系保持一致,强调结果的可靠性。反向MR分析表明,对CRC和IBD的遗传易感性对T2DM的相对风险没有显着影响。确定了十个hub基因,主要富含途径,包括年轻人的成熟型糖尿病,甲状腺癌,胃酸分泌,长寿调节途径,黑色素生成,和胰腺分泌。
    T2DM的存在不会增加CRC或IBD的风险。此外,2型糖尿病可能降低IBD的风险,包括UC。相反,CRC或IBD的发生不影响T2DM的风险。T2DM与IBD/UC之间的关系可能与多种代谢途径的变化和CTLA-4介导的免疫应答有关。
    Observational studies have indicated associations between type 2 diabetes mellitus (T2DM) and both colorectal cancer (CRC) and inflammatory bowel disease (IBD). However, the underlying causality and biological mechanisms between these associations remains unclear.
    We conducted a bidirectional Mendelian randomization (MR) analysis employing summary statistics from genome-wide association studies involving European individuals. The inverse variance weighting (IVW) method was the primary method used to assess causality. Additionally, we applied MR Egger, Weighted median, Simple mode, and Weighted mode to evaluate the robustness of the results. Outliers were identified and eliminated using the MR-PRESSO, while the MR-Egger intercept was used to assess the horizontal pleiotropic effects of single nucleotide polymorphisms (SNPs). The heterogeneity was evaluated using the Cochrane Q test, and sensitivity analysis was performed using leave-one-out method. The F statistic was calculated to evaluate weak instrumental variable bias. Finally, a pilot bioinformatics analysis was conducted to explore the underlying biological mechanisms between T2DM and IBD/UC.
    The IVW results demonstrated that T2DM significantly reduced risks of IBD (OR=0.885, 95% CI: 0.818-0.958, P=0.002) and ulcerative colitis (UC) (OR=0.887, 95% CI: 0.812-0.968, P=0.007). Although the 95% CIs of MR Egger, Weighted median, Simple mode, and Weighted mode were broad, the majority of their estimates were consistent with the direction of IVW. Despite significant heterogeneity among SNPs, no horizontal pleiotropy was observed. The leave-one-out analysis showed that the causality remained consistent after each SNP was removed, underscoring the reliability of the results. Reverse MR analysis indicated that genetic susceptibility to both CRC and IBD had no significant effect on the relative risk of T2DM. Ten hub genes were identified, which mainly enriched in pathways including maturity onset diabetes of the young, thyroid cancer, gastric acid secretion, longevity regulating pathway, melanogenesis, and pancreatic secretion.
    The presence of T2DM does not increase the risk of CRC or IBD. Moreover, T2DM might reduce risk of IBD, including UC. Conversely, the occurrence of CRC or IBD does not influence the risk of T2DM. The association between T2DM and IBD/UC may be related to the changes in multiple metabolic pathways and CTLA-4-mediated immune response.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

公众号