antibiotic sensitivity test

  • 文章类型: Journal Article
    农民在兽医实践中滥用抗生素正在损害畜牧业生产和食品安全,并导致抗生素耐药性(AMR)上升。这也可以将抗性细菌从动物转移到人类,构成严重的公共卫生威胁。然而,我们没有足够重视理解农民在这方面的行为。我们的研究旨在探索农民的行为,并确定影响他们选择的因素。为了进行这项研究,我们使用包含40个问题的问卷,调查了Jhunjhunu区的208名农民,拉贾斯坦邦.我们使用SPSS对数据进行了分析。以下是主要发现:大约58.3%的农民对抗生素有一定的认识,49.5%的人意识到抗菌药物耐药性(AMR)。值得注意的是,随着教育水平的提高,对抗生素的认识也是如此。不幸的是,63.9%的农民不知道退出时间,64%的人不知道在此期间是否存在抗生素残留。大约75%的农民为他们的动物接种疫苗,但约56.9%的个体从未接受过牛奶抗生素敏感性试验(ABST).大约48.6%的农民不知道政府检测中心。有几个因素阻碍农民实施适当的动物管理措施,比如兽医的高额费用。当他们的动物生病时,他们的第一选择是家庭疗法,然后使用旧的处方。此外,63.9%的人一旦动物看起来更好就停止治疗。很大一部分(83.8%)的农民依赖当地药剂师的药物。已经确定,教育之间没有显著的相关性,经验,年龄,以及对退出期的认识水平,政府抗生素敏感性测试(ABST)中心的存在,和负责发送ABST样品的实体。在我们的定性分析中,焦点小组确定了遵循最佳农场实践和传播AMR意识的重大障碍。这些发现表明,解决牲畜中的AMR需要一个全面的方法。这应该包括针对农民的有针对性的教育和意识计划,以及改善获得兽医服务的机会。
    The misuse of antibiotics in veterinary practices by farmers is harming livestock production and food safety and leading to the rise of antibiotic resistance (AMR). This can also transfer resistant bacteria from animals to humans, posing a serious public health threat. However, we have not paid enough attention to understanding how farmers behave in this regard. Our study aims to explore farmers\' behaviors and identify the factors that influence their choices. To conduct this study, we used a questionnaire with 40 questions and surveyed 208 farmers in Jhunjhunu district, Rajasthan. We analyzed the data using SPSS. Here are the key findings: About 58.3% of the farmers have some awareness of antibiotics, and 49.5% are aware of antimicrobial resistance (AMR). Notably, as the level of education increases, so does awareness of antibiotics. Unfortunately, 63.9% of the farmers are not aware of the withdrawal time, and 64% have no idea about the presence of antibiotic residues during this period. Around 75% of farmers vaccinate their animals, but approximately 56.9% of individuals have never undergone an antibiotic sensitivity test (ABST) for milk. Around 48.6% of farmers are unaware of government testing centers. Several factors hinder farmers from implementing proper animal management practices, such as the high fees of veterinarians. When their animals become sick, their first choice is home remedies, followed by using old prescriptions. Additionally, 63.9% stop treatment once the animal looks better. A significant portion (83.8%) of farmers rely on local pharmacists for medicine. It has been determined that there is no significant correlation between education, experience, age, and the level of awareness concerning withdrawal periods, the existence of government antibiotic sensitivity test (ABST) centers, and entities responsible for sending samples for ABST. In our qualitative analysis, focus groups identified significant barriers to following best farm practices and spreading awareness about AMR. These findings suggest that addressing AMR in livestock requires a comprehensive approach. This should include targeted education and awareness programs for farmers, as well as improved access to veterinary services.
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  • 文章类型: Journal Article
    背景:随着抗菌药物的广泛使用,细菌耐药性已成为一个重要问题,对公众健康构成严重威胁。医院临床感染菌株的流行情况及其药物敏感性是临床合理使用抗生素的关键。
    目的:为了确定医院环境中的流行细菌及其对抗生素的耐药性,从而指导临床医生有效使用抗生素。
    方法:微生物实验室收集了来自整个机构的样本。VITEK2紧凑型全自动分析仪用于细菌鉴定和抗生素敏感性测试,并利用WHONET5.6软件进行统计分析。
    结果:共检测到12062株具有关键监测意义的细菌。金黄色葡萄球菌对青霉素表现出广泛的耐药性,但没有一个菌株对万古霉素或利奈唑胺耐药。此外,检出耐甲氧西林凝固酶阴性葡萄球菌219株,耐甲氧西林金黄色葡萄球菌110株。粪肠球菌对第三代喹诺酮类环丙沙星和左氧氟沙星呈中度耐药,但对呋喃妥因和四环素的耐药性较低。屎肠球菌对第3代和第4代喹诺酮类药物的耐药性明显低于粪肠球菌。两个关键监测菌株的抗性,大肠杆菌和肺炎克雷伯菌,哌拉西林/他唑巴坦为5%-8%。然而,大肠埃希菌和肺炎克雷伯菌均不对美罗培南耐药。鲍曼不动杆菌对哌拉西林/舒巴坦的耐药率近90%。尽管如此,对替加环素的耐药性很低,铜绿假单胞菌在抗生素敏感性试验中表现出最小的耐药性,在过去的6年中,对头孢菌素类抗生素头孢替坦和头孢哌酮的耐药性<10%。在过去的3年中,对阿米卡星的耐药性保持在0.2%。
    结论:2017-2022年我院抗菌药物总体耐药率相对稳定。每季度报告关键监测菌株的检出率,并监测其耐药动态,并传达给全院,从而指导临床抗生素的选择。
    BACKGROUND: With the widespread use of antimicrobial drugs, bacterial resistance has become a significant problem, posing a serious threat to public health. The prevalence of clinical infection strains in hospitals and their drug sensitivities are key to the appropriate use of antibiotics in clinical practice.
    OBJECTIVE: To identify prevalent bacteria and their antibiotic resistance profiles in a hospital setting, thereby guiding effective antibiotic usage by clinicians.
    METHODS: Specimens from across the institution were collected by the microbiology laboratory. The VITEK 2 compact fully automatic analyzer was used for bacterial identification and antibiotic sensitivity testing, and the WHONET5.6 software was utilized for statistical analysis.
    RESULTS: A total of 12062 bacterial strains of key monitoring significance were detected. Staphylococcus aureus demonstrated widespread resistance to penicillin, but none of the strains were resistant to vancomycin or linezolid. Moreover, 219 strains of methicillin-resistant coagulase-negative staphylococci and 110 strains of methicillin-resistant Staphylococcus aureus were detected. Enterococcus faecalis showed moderate resistance to the third-generation quinolones ciprofloxacin and levofloxacin, but its resistance to nitrofurantoin and tetracycline was low. Enterococcus faecium displayed significantly lower resistance to third- and fourth-generation quinolones than Enterococcus faecalis. The resistance of two key monitoring strains, Escherichia coli and Klebsiella pneumoniae, to piperacillin/tazobactam was 5%-8%. However, none of the Escherichia coli and Klebsiella pneumoniae strains were resistant to meropenem. The resistance of Acinetobacter baumannii to piperacillin/sulbactam was nearly 90%. Nonetheless, the resistance to tigecycline was low, and Pseudomonas aeruginosa demonstrated minimal resistance in the antibiotic sensitivity test, maintaining a resistance of < 10% to the cephalosporin antibiotics cefotetan and cefoperazone over the last 6 years. The resistance to amikacin remained at 0.2% over the past 3 years.
    CONCLUSIONS: Our hospital\'s overall antibiotic resistance rate was relatively stable from 2017 to 2022. The detection rates of key monitoring strains are reported quarterly and their resistance dynamics are monitored and communicated to the entire hospital, which can guide clinical antibiotic selection.
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  • 文章类型: Observational Study
    感染性角膜炎是一种威胁视力的疾病,通常是眼部急症。视觉结果取决于及时和准确的临床管理以及地理和流行病学意识。我们进行了一项回顾性观察研究,以确定流行病学和实验室概况,以及圣保罗三级医院细菌性角膜炎的临床病程超过2年。关于年龄的信息,性别,诱发因素,局部和手术治疗,视敏度,溃疡分类,细菌镜,文化,并收集抗生素敏感性试验。这项研究包括160名患者。平均年龄为65.1±18.4岁,在83.1%的患者中发现了危险因素。经验性局部强化头孢菌素与氨基糖苷或第四代氟喹诺酮可治愈66.2%的病例。平均治疗时间为22.5±9天。视力的平均变异为-0.25logMAR,p<0.001。培养显示64%的革兰氏阳性细菌。所有革兰阳性菌均对头孢菌素敏感,万古霉素,和喹诺酮类药物.所有革兰阴性菌均对庆大霉素敏感,妥布霉素,阿米卡星,还有环丙沙星.这些发现加强了使用强化的头孢菌素和氨基糖苷或第四代氟喹诺酮对严重角膜溃疡进行及时经验性治疗的重要性,因为它们同样有效。收集的数据不足以评估该人群中眼感染随时间的抵抗力。
    Infectious keratitis is a sight-threatening condition that is usually an ocular emergency. The visual outcome depends on prompt and accurate clinical management as well as geographic and epidemiological awareness. We conducted a retrospective observational study to define the epidemiological and laboratory profile, as well as the clinical course of bacterial keratitis in a tertiary hospital in São Paulo over 21 years. Information about age, sex, predisposing factors, topical and surgical treatment, visual acuity, ulcers\' classification, bacterioscopy, culture, and antibiotic sensitivity tests were collected. This study included 160 patients. The mean age was 65.1 ± 18.4 years and risk factors were identified in 83.1 % of the patients. Empirical topical fortified cephalosporin with an aminoglycoside or fourth-generation fluoroquinolone was curative for 66.2 % of the cases. The mean treatment duration was 22.5 ± 9 days. The mean variation of visual acuity was -0.25 logMAR, p < 0.001. Culture revealed 64 % of Gram-positive bacteria. All Gram-positive bacteria were sensitive to cephalothin, vancomycin, and quinolones. All Gram-negative bacteria were sensitive to gentamicin, tobramycin, amikacin, and ciprofloxacin. These findings reinforce the importance of prompt empirical treatment of severe corneal ulcers with a fortified cephalosporin and aminoglycoside or a fourth-generation fluoroquinolone as there are equally effective. Collected data was insufficient to evaluate resistance of ocular infections over time in this population.
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  • 文章类型: Journal Article
    牛乳因其富含营养的代谢产物而成为人类饮食中的重要食物成分。然而,牛亚临床乳腺炎改变了牛奶的成分和质量。在目前的研究中,加州乳腺炎测试,体细胞计数,pH值,和电导率被用作确认试验来检测亚临床乳腺炎。主要目标是研究代谢组并鉴定患有亚临床乳腺炎的奶牛中的主要病原体。在这项研究中,用气相色谱-质谱法检测牛奶中29种代谢物。挥发性酸性化合物,如己酸,十六烷酸,月桂酸,辛酸,正癸酸,三芥酸,十四烷酸,在牛奶样本中发现了高酸,这些赋予牛奶很好的味道。元分析工具用于代谢途径分析和主成分估计。在这项研究中,乳中的EC和pH值显着增加(p&lt;0.0001),而与健康动物相比,患有亚临床型乳腺炎的动物的脂肪(p&lt;0.04)和蛋白质(p&lt;0.0002)显着降低。金黄色葡萄球菌是发现的主要病原体(n=54),其次是大肠杆菌(n=30)。此外,抗生素敏感性显示金黄色葡萄球菌对庆大霉素更敏感(79.6%),而大肠杆菌对盐酸多西环素更敏感(80%)。
    Bovine milk is an important food component in the human diet due to its nutrient-rich metabolites. However, bovine subclinical mastitis alters the composition and quality of milk. In present study, California mastitis testing, somatic cell count, pH, and electrical conductivity were used as confirmatory tests to detect subclinical mastitis. The primary goal was to study metabolome and identify major pathogens in cows with subclinical mastitis. In this study, 29 metabolites were detected in milk using gas chromatography−mass spectrometry. Volatile acidic compounds, such as hexanoic acid, hexadecanoic acid, lauric acid, octanoic acid, n-decanoic acid, tricosanoic acid, tetradecanoic acid, and hypogeic acid were found in milk samples, and these impart good flavor to the milk. Metaboanalyst tool was used for metabolic pathway analysis and principal component estimation. In this study, EC and pH values in milk were significantly increased (p < 0.0001), whereas fat (p < 0.04) and protein (p < 0.0002) significantly decreased in animals with subclinical mastitis in comparison to healthy animals. Staphylococcus aureus was the predominant pathogen found (n = 54), followed by Escherichia coli (n = 30). Furthermore, antibiotic sensitivity revealed that Staphylococcus aureus was more sensitive to gentamicin (79.6%), whereas Escherichia coli showed more sensitivity to doxycycline hydrochloride (80%).
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  • 文章类型: Journal Article
    背景:尿路感染是世界公共卫生问题,这主要是由尿路致病性大肠杆菌引起的。虽然,在大多数情况下,它们最初存在于肠道微生物群中,尿路感染也可由肠道内致病性大肠杆菌引起。
    目的:我们研究的主要目的是确定通常与系统发育群体中不同病理类型相关的毒力因子。
    方法:E.从尿路感染患者中分离出大肠杆菌。抗菌药物敏感性试验,对毒力基因和系统群进行了展望。使用卡方和Fisher精确检验进行数据分析。
    结果:总计,72.2%的分离株出现多重耐药。我们还描述了来自患有UTI的住院患者的大肠杆菌与pap和hlyA基因之间的重要关联(分别为p-0.041和p-0.019)。在我们的分离物中,主要的系统发育组是B2(45.4%),其次是D(12.4%)。我们的结果表明,9.3%的分离株具有未知的系统群,其与astA基因显着相关(p-0.008)。我们也发现了B2和三个毒力基因之间的显著关联,即pap,hlyA和invE(分别为p-0.002,p-0.001,p-0.025);B1和pap,hlyA基因(分别为p-0.049和p-0.021);E和afa基因(p-0.024)。
    结论:某些毒力因子已被证明是药物设计和治疗途径的潜在靶标,以应对抗生素治疗增强的抗菌素耐药性问题。
    Urinary tract infections represent a world public health problem, which is caused mainly by Uropathogenic Escherichia coli. Although they are originally found in the intestinal microbiota in the majority of the cases, urinary tract infections can also be caused by intra-intestinal pathogenic E. coli.
    The main objective of our research is to identify the virulence factors generally associated with different pathotypes across phylogenetic groups.
    E. coli were isolated from patients with urinary tract infections. Antimicrobial susceptibility tests, virulence genes and phylogroups were prospected. The data analysis were performed using the chi-square and Fisher exact test.
    In total, 72.2% of isolates showed multidrug resistant. We have also depicted an important association between E. coli from inpatients with UTIs and pap and hlyA genes (p-0.041 and p-0.019 respectively). The predominant phylogenetic group in our isolates is B2 (45.4%) followed by D (12.4%). Our results showed that 9.3% of isolates have an unknown phylogroup which shows a significant association with astA gene (p-0.008). We have as well found a significant association between B2 and three virulence genes namely pap, hlyA and invE (p-0.002, p-0.001, p-0.025 respectively); B1 and pap, hlyA genes (p-0.049 and p-0.021 respectively); E and afa gene (p-0.024).
    Certain virulence factors have been shown to be potential targets for drug design and therapeutic pathways in order to deal with the antimicrobial resistance problem enhanced by antibiotic therapy.
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  • 文章类型: Journal Article
    2019年4月至6月,在圣约瑟夫基特古姆医院(乌干达)进行了一项从139例疑似尿路感染(UTI)患者中获得的中流尿液样本中分离出的微生物的横断面研究。在西班牙的实验室中通过MALDI-TOF质谱鉴定了所有微生物。使用圆盘扩散方法(Kirby-Bauer试验)在现场确定了抗微生物敏感性,随后将这些结果与使用BectonDickinsonPhoenixM50装置在西班牙获得的结果进行了比较。UTI伴细菌生长的总体患病率为64.0%(n=89)(95%CI,56.1-72.0),11例出现混合感染。因此,分离出100种微生物。最常见的尿路病原菌是肠球菌属。(57%)和大肠杆菌(28%)。呋喃妥因是最有效的药物(革兰氏阳性细菌为81.7%,革兰氏阴性细菌为87.3%),其次是亚胺培南(94.2%和74.5%,分别)。阿莫西林和环丙沙星的耐药率最高(分别为66.2%和44.6%,分别)。鉴于抗生素耐药性的增加趋势,需要进行细菌学培养和对尿路病原体抗生素敏感性的连续监测。乌干达应停止使用阿莫西林和环丙沙星作为尿路感染的经验性治疗。这项研究的结果可能对临床医生有用,因为它们可能会改善经验治疗。
    A cross-sectional study of microorganisms isolated from mid-stream urine samples obtained from 139 patients with suspected urinary tract infection (UTI) who presented leukocyturia was conducted from April to June 2019 at Saint Joseph Kitgum Hospital (Uganda). All microorganisms were identified by MALDI-TOF mass spectrometry in a laboratory in Spain. Antimicrobial susceptibility was determined on site using the disc diffusion method (Kirby-Bauer test) and these results were subsequently compared with those obtained in Spain using the Becton Dickinson Phoenix M50 device. The overall prevalence of UTI with bacterial growth was 64.0% (n = 89) (95% CI, 56.1-72.0), and 11 presented mixed infection. As a result, 100 microorganisms were isolated. The most common uropathogens were Enterococcus spp. (57%) and Escherichia coli (28%). Nitrofurantoin was the most effective drug (81.7% in Gram-positive and 87.3% in Gram-negative bacteria), followed by imipenem (94.2% and 74.5%, respectively). The highest resistance rates were observed for amoxicillin and ciprofloxacin (66.2% and 44.6%, respectively). Given the increasing trend toward antibiotic resistance, there is a need for bacteriological cultures and continuous surveillance of uropathogen antibiotic susceptibility. Use of amoxicillin and ciprofloxacin as empirical treatments for UTIs should be discontinued in Uganda. The findings of this study may be useful for clinicians, as they may improve empirical treatment.
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  • 文章类型: Journal Article
    The present antibiotic susceptibility testing (AST) techniques based on bacterial culture, gene amplification and mass spectrometry are highly time consuming, labour intensive or expensive. Impedance spectroscopy is an emerging tool for rapid bacterial analysis as it is label-free, real-time, affordable and high-throughput. The over-reliance of this technique on complex chip designs and cell enrichment strategies has, however, slowed its foray into clinical AST. We demonstrate a label-free approach in which a low conductivity zwitterionic buffer is used for boosting impedance sensitivity in simple interdigitated electrodes (IDEs) allowing rapid AST in just 20 min without any liquid flow, biofunctionalization or cell enrichment steps. The detection principle relies on measuring changes in solution resistance due to antibiotic-induced bacterial cell death or growth. While the death-based approach is faster (20 min), it\'s restricted to surface-acting bactericidal antibiotics. The cell growth approach is longer (60-80 min) but more versatile as it applies to all drug types. Results for antibiotic sensitivity analysis and minimum inhibitory concentration (MIC) determination are illustrated for Escherichia coli, Klebsiella pneumoniae and Staphylococcus aureus against a wide class of antibiotics (penicillins, cephalosporins, polymyxins, carbapenems etc.).
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  • 文章类型: Journal Article
    UNASSIGNED: Infectious coryza (IC) or snot is an infectious upper respiratory disease affecting chickens and birds, including quails, and it is caused by Avibacterium paragallinarum. The symptoms of IC are facial swelling, malodorous nasal discharge, and lacrimation. This study aimed to isolate, identify, and serotype the A. paragallinarum of snot in quails and to determine the sensitivity and resistance to several antibiotics.
    UNASSIGNED: Nine quails from Yogyakarta, Indonesia with typical snot disease symptoms were used in this study. The nasal swab was obtained and directly streaked onto a chocolate agar plate and blood agar plate (BAP), then incubated in 5% CO2 at 37°C for 24-48 h. Staphylococcus spp. was cross-streaked onto the BAP to show the satellite growth. The observation of the morphology of the suspected colony, Gram staining, and biochemical tests (catalase test, oxidase test, urease test, peptone test, and carbohydrate fermentation such as maltose, mannitol, lactose, and sorbitol) are done to identify the species of bacteria. This research also detects the serovar of A. paragallinarum using hemagglutination inhibition test.The antibiotic sensitivity tests were also performed using several antibiotics against five A. paragallinarum isolates that were cultured on Mueller-Hinton Agar and added with antibiotic discs, then incubated in 5% CO2 at 37°C for 24-48 h.
    UNASSIGNED: Five isolates out of nine suspected isolates (55.5%) were A. paragallinarum. The growth of isolates from quails did not depend on the nicotinamide adenine dinucleotide (NAD) (NAD-independent). Sensitivity test was done using the five identified A. paragallinarum isolates, results showed that they were 100% sensitive to amoxicillin (AMC) and ampicillin (AMP); 100% resistant toward amikacin (AK), erythromycin (E), gentamycin (CN), and tetracycline (TE); 80% resistant toward kanamycin (K) and trimethoprim (W); 60% resistant toward chloramphenicol (C); and 20% toward enrofloxacin (ENR). The antibiotics that have an intermediate sensitivity (in between sensitive and resistant) were ENR and K, 80% and 20%, respectively. Three out of five A. paragallinarum isolates were identified as serovar B of A. paragallinarum using HI test.
    UNASSIGNED: Five out of nine isolates (55.5%) from quails with typical IC disease symptoms identified as A. paragallinarum and sensitive toward AMC and AMP. Three out of five A. paragallinarum isolates were identified as serovar B.
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  • 文章类型: Journal Article
    Urinary tract infection (UTI) remains to be one of the most common infectious diseases diagnosed in developing countries. And a widespread use of antibiotics against uropathogens has led to the emergence of antibiotic resistant species. A laboratory based cross-sectional survey was conducted in Shashemene referral hospital to determine the prevalence and antibiotic susceptibility of uropathogens.
    We have collected 384 clean catch mid-stream urine samples from all suspected UTI outpatients using sterile screw capped container. The urine samples were cultured and processed for subsequent uropathogens isolation. The isolated pure cultures were grown on BiOLOG Universal Growth agar (BUG) and identified using GEN III OmniLog® Plus ID System identification protocols. The identified species were then exposed to selected antibiotics to test for their susceptibility.
    The overall prevalence of urinary tract infection in the area was 90.1%. Most frequently isolated uropathogen in our study was Escherichia coli (39.3%). While, Staphylococcus species (20.2%), Leuconostoc species (11.4%), Raoultella terrigena/Klebsiella spp./ (8.4%), Salmonella typhimurium (6.3%), Dermacoccus nishinomiyaensis (6.3%), Citerobacter freundii (5.2%) and Issatchenkia orientalis/Candida krusei/ (2.7%) were the other isolates. We find that the relationship between uropathogens and some of UTI risk factors was statistically significant (P < 0.05). Gentamicin was the most effective drug against most of the isolates followed by chloramphenicol and nitrofurantoin. In contrast, amoxicillin, vancomycin and cephalexin were the antibiotics to which most of the isolates developed resistance.
    Urinary tract infection was highly prevalent in the study area and all uropathogens isolated developed a resistance against mostly used antibiotics.
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  • 文章类型: Journal Article
    OBJECTIVE: Bacteria in the tooth root canal may cause apical periodontitis. This study examined the bacterial species present in the apical root canal of teeth with apical periodontitis. Antibiotic sensitivity tests were performed to evaluate whether these identified bacterial species were susceptible to specific kinds of antibiotics.
    METHODS: Selective media plating and biochemical tests were used first to detect the bacterial species in samples taken from the apical portion of root canals of 62 teeth with apical periodontitis. The isolated bacterial species were further confirmed by matrix-assisted laser desorption ionization-time of flight mass spectrometry.
    RESULTS: We found concomitant presence of two (32 teeth) or three species (18 teeth) of bacteria in 50 (80.6%) out of 62 tested teeth. However, only 34 bacterial species were identified. Of a total of 118 bacterial isolates (83 anaerobes and 35 aerobes), Prophyromonas endodontalis was detected in 10; Bacteroides, Dialister invisus or Fusobacterium nucleatum in 9; Treponema denticola or Enterococcus faecalis in 8; Peptostreptococcus or Olsenella uli in 6; and Veillonella in 5 teeth. The other 25 bacterial species were detected in fewer than five teeth. Approximately 80-95% of bacterial isolates of anaerobes were sensitive to ampicillin/sulbactam (Unasyn), amoxicillin/clavulanate (Augmentin), cefoxitin, and clindamycin. For E. faecalis, 85-90% of bacterial isolates were sensitive to gentamicin and linezolid.
    CONCLUSIONS: Root canal infections are usually caused by a mixture of two or three species of bacteria. Specific kinds of antibiotic can be selected to control these bacterial infections after antibiotic sensitivity testing.
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