Yersinia

耶尔森氏菌
  • 文章类型: Journal Article
    背景。本系统评价和荟萃分析的目的是估计感染弯曲杆菌的个体的比例。埃希氏菌,沙门氏菌,志贺氏菌,或耶尔森氏菌会发展为反应性关节炎。方法。进行了系统的审查,包含2024年1月之前发表的英语文章,来自Embase,PubMed,Scopus,和WebofScience数据库。这篇综述包括观察性研究,这些研究报告了弯曲杆菌患者反应性关节炎(ReA)的发生,埃希氏菌,沙门氏菌,志贺氏菌,或耶尔森氏菌感染。数据提取由两名审阅者独立进行。随后,进行了随机效应荟萃分析,使用I2值评估异质性。此外,采用meta回归分析研究水平变量对观察到的异质性的潜在影响。结果。共确定了87项研究;23项报道了弯曲杆菌感染后的ReA发展,7例大肠杆菌感染后的ReA报告,30例报告沙门氏菌病后出现ReA,14在志贺氏菌病后报告了ReA,13例报告了耶尔森氏菌感染后的ReA。出现ReA的弯曲杆菌患者比例为0.03(95%CI[0.01,0.06],I2=97.62%);发生ReA的大肠埃希菌患者比例为0.01(95%CI[0.00,0.06],I2=92.78%);沙门氏菌患者比例为0.04(95%CI[0.02,0.08],I2=97.67%);志贺氏菌患者比例为0.01(95%CI[0.01,0.03],I2=90.64%);发生ReA的耶尔森氏菌患者比例为0.05(95%CI[0.02,0.13],I2=96%)。结论。沙门氏菌的比例很大,志贺氏菌,耶尔森氏菌病例导致了ReA。尽管如此,由于研究之间存在显著的异质性,因此谨慎解释研究结果非常重要.
    Background. The objective of this systematic review and meta-analysis was to estimate the proportions of individuals infected with Campylobacter, Escherichia, Salmonella, Shigella, or Yersinia who develop reactive arthritis. Methods. A systematic review was conducted, encompassing English-language articles published before January 2024, sourced from the Embase, PubMed, Scopus, and Web of Science databases. This review included observational studies that reported the occurrence of reactive arthritis (ReA) among patients with Campylobacter, Escherichia, Salmonella, Shigella, or Yersinia infections. Data extraction was carried out independently by two reviewers. Subsequently, a random-effects meta-analysis was performed, with heterogeneity assessed using the I2 value. Additionally, meta-regression was employed to investigate the potential influence of study-level variables on the observed heterogeneity. Results. A total of 87 studies were identified; 23 reported on ReA development after Campylobacter infection, 7 reported on ReA after Escherichia infection, 30 reported ReA onset after salmonellosis, 14 reported ReA after shigellosis, and 13 reported ReA after Yersinia infection. The proportion of Campylobacter patients who developed ReA was 0.03 (95% CI [0.01, 0.06], I2 = 97.62%); the proportion of Escherichia patients who developed ReA was 0.01 (95% CI [0.00, 0.06], I2 = 92.78%); the proportion of Salmonella patients was 0.04 (95% CI [0.02, 0.08], I2 = 97.67%); the proportion of Shigella patients was 0.01 (95% CI [0.01, 0.03], I2 = 90.64%); and the proportion of Yersinia patients who developed ReA was 0.05 (95% CI [0.02, 0.13], I2 = 96%). Conclusion. A significant proportion of Salmonella, Shigella, and Yersinia cases resulted in ReA. Nonetheless, it is important to interpret the findings cautiously due to the substantial heterogeneity observed between studies.
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  • 文章类型: Journal Article
    耶尔森氏菌是一个重要的属,包括食源性,人畜共患和病原菌。另一方面,所谓的小肠结肠炎耶尔森氏菌类群的物种尚未得到充分研究,并且大多数特征为非致病性,尽管有一些人类感染的报道。本研究旨在提供耶尔森氏菌(YF)的基因组见解,中间耶尔森氏菌(YI)和全球分离的克里斯滕森耶尔森氏菌(YK)。总共22YF,搜索了20个YI和14个YK基因组的抗菌素抗性基因,质粒,预言,和毒力因子。通过Gegenees和核心基因组多位点序列分型分析了它们的系统基因组相关性。β-内酰胺抗性基因blaTEM-116和五个质粒复制子(pYE854,ColRNAI,在少于五个基因组中检测到ColE10,Col(pHAD28)和IncN3。总共59个预言,耶尔森氏菌属的106个毒力标记,与坚持相关,抗吞噬作用,外泌酶,入侵,铁吸收,蛋白酶,分泌系统和O-抗原,并检测到与其他20个细菌属相关的毒力因子。系统基因组分析显示,物种间的差异很高,并且有四个高度多样化的YF簇。总之,通过对YF的分析获得的结果,YI和YK基因组表明了这些菌株的毒力潜力,这是由于发现的噬菌体和毒力因子的广泛多样性和高频率。系统发育分析能够正确区分这些密切相关的物种,并显示存在不同的遗传亚群。这些数据有助于更好地理解YF,YI和YK毒力相关特征和全球遗传多样性,并加强了对这些被认为是非致病性的小肠结肠炎样物种进行更好表征的需求。
    Yersinia is an important genus comprising foodborne, zoonotic and pathogenic bacteria. On the other hand, species of the so-called group Yersinia enterocolitica-like are understudied and mostly characterized as non-pathogenic, despite of some reports of human infections. The present study aimed to provide genomic insights of Yersinia frederiksenii (YF), Yersinia intermedia (YI) and Yersinia kristensenii (YK) isolated worldwide. A total of 22 YF, 20 YI and 14 YK genomes were searched for antimicrobial resistance genes, plasmids, prophages, and virulence factors. Their phylogenomic relatedness was analyzed by Gegenees and core-genome multi-locus sequence typing. Beta-lactam resistance gene blaTEM-116 and five plasmids replicons (pYE854, ColRNAI, ColE10, Col(pHAD28) and IncN3) were detected in less than five genomes. A total of 59 prophages, 106 virulence markers of the Yersinia genus, associated to adherence, antiphagocytosis, exoenzymes, invasion, iron uptake, proteases, secretion systems and the O-antigen, and virulence factors associated to other 20 bacterial genera were detected. Phylogenomic analysis revealed high inter-species distinction and four highly diverse YF clusters. In conclusion, the results obtained through the analyses of YF, YI and YK genomes suggest the virulence potential of these strains due to the broad diversity and high frequency of prophages and virulence factors found. Phylogenetic analyses were able to correctly distinguish these closely related species and show the presence of different genetic subgroups. These data contributed for a better understanding of YF, YI and YK virulence-associated features and global genetic diversity, and reinforced the need for better characterization of these Y. enterocolitica-like species considered non-pathogenic.
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  • 文章类型: Case Reports
    在这个案例报告中,我们介绍了1例有脾切除术史的患者和2例最近因严重胃肠炎合并脓毒症入院的患者.第一次入院是小肠结肠炎耶尔森氏菌,第二次入院是弯曲杆菌胎儿胃肠炎伴菌血症。在两次录取期间,该患者接受了延长疗程的抗生素治疗,随后完全康复出院。在我们的审查中,我们探讨了脾切除患者发生小肠结肠炎的风险.
    In this case report, we present a patient with a history of splenectomy and two recent hospital admissions for severe gastroenteritis with sepsis. The first hospital admission was for Yersinia enterocolitica and the second admission was for Campylobacter fetus gastroenteritis with bacteremia. During both admissions, the patient was treated with a prolonged course of antibiotics and later discharged with full recovery. In our review, we address the risk of enterocolitis in splenectomized patients.
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  • 文章类型: Journal Article
    细菌毒素或效应蛋白对靶蛋白的单-O-糖基化是细菌干扰宿主细胞基本功能的公知机制。相应的糖基转移酶是重要的毒力因子,例如艰难梭菌毒素A和B。我们描述了耶尔森氏菌的两种具有高度序列同一性的糖基转移酶:来自人畜共患病原体小肠结肠炎耶尔森氏菌的YeGT和来自鼠病原体耶尔森氏菌的YkGT。我们表明,两者都通过在酪氨酸残基(RhoA中的Tyr-34)上连接N-乙酰葡糖胺(GlcNAc)来修饰Rho家族蛋白。值得注意的是,这些酶的靶蛋白特异性不同。虽然YeGT修改了RhoA,B和C,YkGT具有更宽的底物谱,不仅可以糖基化Rho,还可以糖基化Rac和Cdc42亚家族蛋白。诱变研究表明,残基177对于该更宽的目标谱是重要的。我们确定了YeGT在无配体状态下缩短了16个N末端残基(sYeGT)并与UDP结合的晶体结构,底物水解的产物。该结构将sYeGT分配给GT-A家族。它与来自毒素的糖基转移酶结构域具有高度的结构相似性。我们还证明,YeGT和YkGT的16个最N末端残基对于使用炭疽毒素的成孔保护性抗原介导的易位到宿主细胞中很重要。介导的引入Hela细胞或YeGT和YkGT的异位表达引起肌动蛋白细胞骨架的形态变化和重新分布。数据表明YeGT和YkGT可能是属于酪氨酸糖基化细菌糖基转移酶家族的细菌效应物。
    Mono-O-glycosylation of target proteins by bacterial toxins or effector proteins is a well-known mechanism by which bacteria interfere with essential functions of host cells. The respective glycosyltransferases are important virulence factors such as the Clostridioides difficile toxins A and B. Here, we describe two glycosyltransferases of Yersinia species that have a high sequence identity: YeGT from the zoonotic pathogen Yersinia enterocolitica and YkGT from the murine pathogen Yersinia kristensenii. We show that both modify Rho family proteins by attachment of GlcNAc at tyrosine residues (Tyr-34 in RhoA). Notably, the enzymes differed in their target protein specificity. While YeGT modified RhoA, B, and C, YkGT possessed a broader substrate spectrum and glycosylated not only Rho but also Rac and Cdc42 subfamily proteins. Mutagenesis studies indicated that residue 177 is important for this broader target spectrum. We determined the crystal structure of YeGT shortened by 16 residues N terminally (sYeGT) in the ligand-free state and bound to UDP, the product of substrate hydrolysis. The structure assigns sYeGT to the GT-A family. It shares high structural similarity to glycosyltransferase domains from toxins. We also demonstrated that the 16 most N-terminal residues of YeGT and YkGT are important for the mediated translocation into the host cell using the pore-forming protective antigen of anthrax toxin. Mediated introduction into HeLa cells or ectopic expression of YeGT and YkGT caused morphological changes and redistribution of the actin cytoskeleton. The data suggest that YeGT and YkGT are likely bacterial effectors belonging to the family of tyrosine glycosylating bacterial glycosyltransferases.
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  • 文章类型: Journal Article
    柠檬酸(CA)是具有抗氧化和抗微生物性能的三羧酸。根据以前的研究,具有三个羧基的小化合物可以被认为是蛋白质酪氨酸磷酸酶抑制剂。Yoph,一种蛋白酪氨酸磷酸酶,是耶尔森氏菌必需的毒力因子。
    我们进行了YopH磷酸酶在用柠檬酸处理后的酶活性测定,具有类似的结构。我们还测量了这些化合物在JurkatTE6.1和巨噬细胞J774.2细胞系中的细胞毒性。我们对柠檬酸分子与YopH磷酸酶的结合进行了分子对接分析。
    柠檬酸和均苯三甲酸可逆地降低了YopH酶的活性,并降低了Jurkat和巨噬细胞系的活力。重要的是,这两种化合物对细菌YopH活性的抑制特性优于对人CD45磷酸酶活性的抑制特性。分子对接模拟证实柠檬酸可以与YopH磷酸酶结合。
    柠檬酸,一种已知的抗氧化剂,可以被认为是细菌磷酸酶的抑制剂。
    UNASSIGNED: Citric acid (CA) is a tricarboxylic acid with antioxidant and antimicrobial properties. Based on previous studies, the small compound with its three carboxylic groups can be considered a protein tyrosine phosphatase inhibitor. YopH, a protein tyrosine phosphatase, is an essential virulence factor in Yersinia bacteria.
    UNASSIGNED: We performed enzymatic activity assays of YopH phosphatase after treatment with citric acid in comparison with the inhibitory compound trimesic acid, which has a similar structure. We also measured the cytotoxicity of these compounds in Jurkat T E6.1 and macrophage J774.2 cell lines. We performed molecular docking analysis of the binding of citric acid molecules to YopH phosphatase.
    UNASSIGNED: Citric acid and trimesic acid reversibly reduced the activity of YopH enzyme and decreased the viability of Jurkat and macrophage cell lines. Importantly, these two compounds showed greater inhibitory properties against bacterial YopH activity than against human CD45 phosphatase activity. Molecular docking simulations confirmed that citric acid could bind to YopH phosphatase.
    UNASSIGNED: Citric acid, a known antioxidant, can be considered an inhibitor of bacterial phosphatases.
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  • 文章类型: Journal Article
    细菌ABC毒素复合物(Tcs)包含三种核心蛋白:TcA,TcB和TcC。TcA蛋白形成附着于靶细胞表面并穿透细胞膜的五聚体组件。TcB和TcC蛋白组装为形成中空壳的异二聚体TcB-TcC亚复合物。该TcB-TcC亚复合物自切割并在壳内封装由TcC蛋白的C末端区域编码的细胞毒性“货物”。这里,我们描述了一种先前未表征的来自昆虫耶尔森氏菌的TcC蛋白的结构,由与编码毒素复合物其余部分的基因相距遥远的基因组位置的基因编码,与TcB蛋白复合。当封装在TcB-TcC外壳内时,C末端毒素呈展开无序状态,有限的局部秩序区域由外壳的伴侣状内表面稳定。我们还单独确定了毒素货物的结构,并表明当不封装在外壳内时,它采用与鼠伤寒沙门氏菌SpvB毒素的催化结构域最相似的ADP-核糖基转移酶折叠。我们的结构分析指出了毒素直接作用于肌动蛋白的可能机制,以阻止正常聚合的方式修改它。
    Bacterial ABC toxin complexes (Tcs) comprise three core proteins: TcA, TcB and TcC. The TcA protein forms a pentameric assembly that attaches to the surface of target cells and penetrates the cell membrane. The TcB and TcC proteins assemble as a heterodimeric TcB-TcC subcomplex that makes a hollow shell. This TcB-TcC subcomplex self-cleaves and encapsulates within the shell a cytotoxic `cargo\' encoded by the C-terminal region of the TcC protein. Here, we describe the structure of a previously uncharacterized TcC protein from Yersinia entomophaga, encoded by a gene at a distant genomic location from the genes encoding the rest of the toxin complex, in complex with the TcB protein. When encapsulated within the TcB-TcC shell, the C-terminal toxin adopts an unfolded and disordered state, with limited areas of local order stabilized by the chaperone-like inner surface of the shell. We also determined the structure of the toxin cargo alone and show that when not encapsulated within the shell, it adopts an ADP-ribosyltransferase fold most similar to the catalytic domain of the SpvB toxin from Salmonella typhimurium. Our structural analysis points to a likely mechanism whereby the toxin acts directly on actin, modifying it in a way that prevents normal polymerization.
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  • 文章类型: Journal Article
    随着新石器时代的转变,人类的生活方式从狩猎和采集转向农业。这种变化改变了生存模式,文化表达,以及考古/动物考古记录所显示的人口结构,以及稳定同位素和古老的DNA数据。这里,我们使用宏基因组数据来分析这些转变是否也影响了25位中石器时代和新石器时代的狩猎采集者和13位来自斯堪的纳维亚石器时代文化背景的新石器时代农民的微生物组组成。肠沙门氏菌,一种可能是被感染个体死亡原因的细菌,在战斧文化背景下的两个新石器时代样本中发现。在漏斗烧杯文化背景以及后来的新石器时代背景下的新石器时代个体中发现了几种细菌耶尔森氏菌。在农业环境中,较密集的种群可能促进了例如小肠结肠炎的传播。
    With the Neolithic transition, human lifestyle shifted from hunting and gathering to farming. This change altered subsistence patterns, cultural expression, and population structures as shown by the archaeological/zooarchaeological record, as well as by stable isotope and ancient DNA data. Here, we used metagenomic data to analyse if the transitions also impacted the microbiome composition in 25 Mesolithic and Neolithic hunter-gatherers and 13 Neolithic farmers from several Scandinavian Stone Age cultural contexts. Salmonella enterica, a bacterium that may have been the cause of death for the infected individuals, was found in two Neolithic samples from Battle Axe culture contexts. Several species of the bacterial genus Yersinia were found in Neolithic individuals from Funnel Beaker culture contexts as well as from later Neolithic context. Transmission of e.g. Y. enterocolitica may have been facilitated by the denser populations in agricultural contexts.
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  • 文章类型: Journal Article
    耶尔森氏菌属包括人类,动物,昆虫,和植物病原体以及许多共生体和无害细菌。该属中有小肠结肠炎耶尔森氏菌和假结核耶尔森氏菌,与四个人类致病物种在基因组水平上高度相关,包括鼠疫的病原体,鼠疫耶尔森氏菌。广泛的实验室,野外工作,并进行了临床研究,以了解这些病原体的潜在发病机制和人畜共患传播。目前有500多个全基因组序列,可以从中开发出进化足迹,详细说明共享和独特的毒力特性。然而,鼠疫耶尔森氏菌的毒力现在似乎在其跳蚤传播周期内处于明显的同质性,影响传播和疾病严重程度的实质性进化变化继续在其他导致肠道疾病的耶尔森亚科内施加明显的选择性压力。在这次审查中,我们将总结目前对耶尔森氏菌的毒力和发病机制的认识,强调共同的毒力机制和决定感染生态位和疾病严重程度的差异。
    The genus Yersinia includes human, animal, insect, and plant pathogens as well as many symbionts and harmless bacteria. Within this genus are Yersinia enterocolitica and the Yersinia pseudotuberculosis complex, with four human pathogenic species that are highly related at the genomic level including the causative agent of plague, Yersinia pestis. Extensive laboratory, field work, and clinical research have been conducted to understand the underlying pathogenesis and zoonotic transmission of these pathogens. There are presently more than 500 whole genome sequences from which an evolutionary footprint can be developed that details shared and unique virulence properties. Whereas the virulence of Y. pestis now seems in apparent homoeostasis within its flea transmission cycle, substantial evolutionary changes that affect transmission and disease severity continue to ndergo apparent selective pressure within the other Yersiniae that cause intestinal diseases. In this review, we will summarize the present understanding of the virulence and pathogenesis of Yersinia, highlighting shared mechanisms of virulence and the differences that determine the infection niche and disease severity.
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  • 文章类型: Journal Article
    背景:从爱尔兰不同地理区域的饮用水样本中鉴定出三种耶尔森氏菌。传统的商业生化鉴定系统将它们分类为小肠结肠炎耶尔森氏菌。由于这种细菌在某些国家是细菌性胃肠炎的最常见原因,需要进一步调查。该研究的目的是提供三种耶尔森氏菌的微生物特征,为了确定它们的致病性,并回顾了本地区小肠结肠炎耶尔森氏菌的检出率。
    方法:使用常规商用诊断系统MALDI-TOF进行生物体识别,API20E,API50CHE,TREK敏感GNID和Vitek2GN,进行全基因组测序(WGS)。检测的历史数据是从2008年至2023年的实验室系统中提取的。
    结果:在常规系统上,所有三个分离株都对小肠结肠炎耶尔森氏菌进行了“良好”鉴定。WGS的进一步分析将其中两个分离株与最近描述的近缘耶尔森氏菌相匹配,第三个是非致病性小肠结肠炎耶尔森氏菌进化枝1Aa的成员。
    结论:我们对这三种分离株的分析认为它们是耶尔森氏菌,目前尚不知道具有致病性,但是确定这一点需要使用下一代测序和先进的生物信息学。我们的工作强调了公共实验室使用这项技术的重要性,在本地或国家参考实验室。引入检测耶尔森氏菌的分子技术可能会提高检测率。准确识别环境中的重要病原体,公共卫生和临床微生物实验室对于保护社会至关重要。
    BACKGROUND: Three Yersinia species were identified from samples of drinking water from diverse geographic regions of Ireland. Conventional commercial biochemical identification systems classified them as Yersinia enterocolitica. Since this organism is the most common cause of bacterial gastroenteritis in some countries, further investigation was warranted. The aim of the study was to provide a microbial characterisation of three Yersinia species, to determine their pathogenicity, and to review the incidence rate of Yersinia enterocolitica detection in our region.
    METHODS: Organism identification was performed using conventional commercial diagnostic systems MALDI-TOF, API 20E, API 50CHE, TREK Sensititre GNID and Vitek 2 GN, and whole genome sequencing (WGS) was performed. Historical data for detections was extracted from the lab system for 2008 to 2023.
    RESULTS: All three isolates gave \"good\" identifications of Yersinia enterocolitica on conventional systems. Further analysis by WGS matched two of the isolates with recently described Yersinia proxima, and the third was a member of the non-pathogenic Yersinia enterocolitica clade 1Aa.
    CONCLUSIONS: Our analysis of these three isolates deemed them to be Yersinia species not known currently to be pathogenic, but determining this necessitated the use of next-generation sequencing and advanced bioinformatics. Our work highlights the importance of having this technology available to public laboratories, either locally or in a national reference laboratory. The introduction of molecular technologies for the detection of Yersinia species may increase the rate of detections. Accurate identification of significant pathogens in environmental, public health and clinical microbiology laboratories is critically important for the protection of society.
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  • 文章类型: Journal Article
    肿瘤坏死因子(TNF)是一种多效性炎性细胞因子,可介导抗微生物防御和肉芽肿形成,以应对多种病原体的感染。我们先前报道过假结核耶尔森氏菌定植于肠粘膜,并诱导嗜中性粒细胞和炎性单核细胞募集到控制耶尔森氏菌感染的称为脓性肉芽肿(PG)的有组织免疫结构中。炎性单核细胞对于控制和清除肠道PG内的耶尔森氏菌至关重要,但对单核细胞如何介导耶尔森氏菌限制的了解甚少。这里,我们证明,单核细胞中的TNF信号传导是肠道耶尔森氏菌感染后细菌遏制所必需的。我们进一步表明,单核细胞固有的TNFR1信号驱动单核细胞衍生的白细胞介素-1(IL-1)的产生,它通过非造血细胞上的IL-1受体发出信号,以使PG介导的肠耶尔森氏菌感染得到控制。总之,我们的工作揭示了单核细胞-内源性TNF-IL-1协同炎症回路,可限制肠道耶尔森氏菌感染.
    Tumor necrosis factor (TNF) is a pleiotropic inflammatory cytokine that mediates antimicrobial defense and granuloma formation in response to infection by numerous pathogens. We previously reported that Yersinia pseudotuberculosis colonizes the intestinal mucosa and induces the recruitment of neutrophils and inflammatory monocytes into organized immune structures termed pyogranulomas (PG) that control Yersinia infection. Inflammatory monocytes are essential for the control and clearance of Yersinia within intestinal PG, but how monocytes mediate Yersinia restriction is poorly understood. Here, we demonstrate that TNF signaling in monocytes is required for bacterial containment following enteric Yersinia infection. We further show that monocyte-intrinsic TNFR1 signaling drives the production of monocyte-derived interleukin-1 (IL-1), which signals through IL-1 receptors on non-hematopoietic cells to enable PG-mediated control of intestinal Yersinia infection. Altogether, our work reveals a monocyte-intrinsic TNF-IL-1 collaborative inflammatory circuit that restricts intestinal Yersinia infection.
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