Structure-Activity Relationship

结构 - 活动关系
  • 文章类型: Journal Article
    在细胞中,信号转导在很大程度上依赖于蛋白激酶的复杂调节,这为调节大多数信号通路提供了基本框架。激酶活性的失调与许多病理状况有关。特别是在癌症中。大多数激酶的药物性质使它们成为药物开发过程中的焦点。然而,一个重大挑战依然存在,因为近三分之一的人类激酶的作用和生物学功能在很大程度上仍然未知。在这个多样化的景观中,细胞周期蛋白依赖性激酶(CDKs)是一个有趣的分子亚群。在人类中,这个激酶家族包含21个成员,参与了几个关键的生物过程。值得注意的是,这些CDK中有13种属于未被研究的激酶类别,到目前为止,只有5人接受了广泛的调查。这种知识差距强调了深入研究这些激酶的迫切需要,从对较少探索的全面审查开始。这里,我们将专注于CDK的PCTAIRE亚家族,其中包括CDK16、CDK17和CDK18,可以说是研究最不足的CDKs成员之一。为了将PCTAIRE置于人类病理生理学范围内,我们对现有文献进行了详尽的回顾,并检查了现有的数据库.这种方法导致了对这些PCTAIRE的清晰描述,包含他们的表达模式,3D配置,激活机制,以及在正常组织和癌症中的潜在功能。我们建议,这项工作为确定从基础研究到潜在的临床和治疗应用的未来研究领域提供了可能性。
    In cells, signal transduction heavily relies on the intricate regulation of protein kinases, which provide the fundamental framework for modulating most signaling pathways. Dysregulation of kinase activity has been implicated in numerous pathological conditions, particularly in cancer. The druggable nature of most kinases positions them into a focal point during the process of drug development. However, a significant challenge persists, as the role and biological function of nearly one third of human kinases remains largely unknown.Within this diverse landscape, cyclin-dependent kinases (CDKs) emerge as an intriguing molecular subgroup. In human, this kinase family encompasses 21 members, involved in several key biological processes. Remarkably, 13 of these CDKs belong to the category of understudied kinases, and only 5 having undergone broad investigation to date. This knowledge gap underscores the pressing need to delve into the study of these kinases, starting with a comprehensive review of the less-explored ones.Here, we will focus on the PCTAIRE subfamily of CDKs, which includes CDK16, CDK17, and CDK18, arguably among the most understudied CDKs members. To contextualize PCTAIREs within the spectrum of human pathophysiology, we conducted an exhaustive review of the existing literature and examined available databases. This approach resulted in an articulate depiction of these PCTAIREs, encompassing their expression patterns, 3D configurations, mechanisms of activation, and potential functions in normal tissues and in cancer.We propose that this effort offers the possibility of identifying promising areas of future research that extend from basic research to potential clinical and therapeutic applications.
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  • 文章类型: Journal Article
    C反应蛋白(CRP)是一种进化保守的血浆蛋白,在脊椎动物和许多无脊椎动物中发现。它是pentraxin超家族的成员,其特征在于其五聚体结构和钙依赖性结合配体如磷酸胆碱(PC)。在人类和其他各种物种中,在炎症期间,这种蛋白质的血浆浓度显着升高,将其确立为在先天免疫反应中起作用的典型急性期蛋白。该特征还可以在临床上用于评估生物体中炎症的严重程度。人类CRP(huCRP)由于构象转变而表现出相反的生物学功能,而CRP在各种物种中保留了体内保守的保护功能。本文的重点是CRP的结构特征,其表达的调节,激活补体,及其在体内相关疾病中的作用。
    C-reactive protein (CRP) is a plasma protein that is evolutionarily conserved, found in both vertebrates and many invertebrates. It is a member of the pentraxin superfamily, characterized by its pentameric structure and calcium-dependent binding to ligands like phosphocholine (PC). In humans and various other species, the plasma concentration of this protein is markedly elevated during inflammatory conditions, establishing it as a prototypical acute phase protein that plays a role in innate immune responses. This feature can also be used clinically to evaluate the severity of inflammation in the organism. Human CRP (huCRP) can exhibit contrasting biological functions due to conformational transitions, while CRP in various species retains conserved protective functions in vivo. The focus of this review will be on the structural traits of CRP, the regulation of its expression, activate complement, and its function in related diseases in vivo.
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  • 文章类型: Journal Article
    赖氨酸脱甲基酶5(KDM5)蛋白参与各种神经系统疾病,包括老年痴呆症,和KDM5抑制有望成为这些疾病的治疗策略。然而,常规KDM5抑制剂的药理作用不足,因为它们仅针对KDM5的催化功能。为了确定具有更有效药理活性的化合物,我们专注于蛋白水解靶向嵌合体(PROTACs),降解靶蛋白,从而抑制它们的全部功能。我们基于先前鉴定的KDM5抑制剂设计并合成了新型KDM5PROTAC候选物。细胞分析的结果表明,两种化合物,20b和23b,在神经母细胞瘤神经2a细胞中通过降解KDM5A表现出显着的神经突生长促进活性。这些结果表明,KDM5PROTACs是用于治疗神经障碍的有希望的候选药物。
    Lysine demethylase 5 (KDM5) proteins are involved in various neurological disorders, including Alzheimer\'s disease, and KDM5 inhibition is expected to be a therapeutic strategy for these diseases. However, the pharmacological effects of conventional KDM5 inhibitors are insufficient, as they only target the catalytic functionality of KDM5. To identify compounds that exhibit more potent pharmacological activity, we focused on proteolysis targeting chimeras (PROTACs), which degrade target proteins and thus inhibit their entire functionality. We designed and synthesized novel KDM5 PROTAC candidates based on previously identified KDM5 inhibitors. The results of cellular assays revealed that two compounds, 20b and 23b, exhibited significant neurite outgrowth-promoting activity through the degradation of KDM5A in neuroblastoma neuro 2a cells. These results suggest that KDM5 PROTACs are promising drug candidates for the treatment of neurological disorders.
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  • 文章类型: Journal Article
    查耳酮和二氢查耳酮(DHCs)是分离自中药的重要生物活性天然产物(BNPs)。在这项研究中,13个查尔酮的设计灵感来自Loureirin,从ResinaDraconis中提取的DHC,并通过经典的Claisen-Schmidt反应合成。然后进行还原反应以获得相应的DHC。细胞毒性实验表明,查耳酮和DHC对大肠癌(CRC)细胞具有选择性的细胞毒性。这些化合物的初步结构-活性关系(SAR)表明α,查耳酮的β-不饱和酮对抗癌活性至关重要。有趣的是,化合物3d和4c对CRC细胞系HCT116表现出选择性抗癌活性,IC50为8.4和17.9μM,但不正常细胞。此外,4c还可以抑制CRC细胞的迁移和侵袭。机制研究表明,4c可以通过调节细胞周期相关蛋白诱导细胞周期G2/M阻滞,也可以上调Fas细胞表面死亡受体。虚拟对接进一步指出,化合物3d和4c可以很好地结合Fas/FADD死亡域复合物(ID:3EZQ)。此外,沉默Fas可显著增强CRC细胞的增殖,并减弱4c诱导的细胞毒性。这些结果表明4c发挥了其抗癌活性,可能调节细胞周期和Fas死亡受体。总之,这项研究调查了Loureirin类似物在CRC中的抗癌活性和机制,提示这些化合物作为有希望的候选抗癌药物用于CRC的治疗可能需要进一步研究.
    Chalcones and dihydrochalcones (DHCs) are important bioactive natural products (BNPs) isolated from traditional Chinese medicine. In this study, 13 chalcones were designed with the inspiration of Loureirin, a DHC extracted from Resina Draconis, and synthesized by classical Claisen-Schmidt reactions. Afterwards the reduction reactions were carried out to obtain the corresponding DHCs. Cytotoxicity assay indicated chalcones and DHCs possessed selective cytotoxicity against colorectal cancer (CRC) cells. The preliminary structure-activity relationships (SAR) of these compounds suggested the α, β-unsaturated ketone of the chalcones were crucial for the anticancer activity. Interestingly, compounds 3d and 4c exhibited selective anticancer activity against CRC cell line HCT116 with IC50s of 8.4 and 17.9 μM but not normal cell. Moreover, 4c could also inhibit the migration and invasion of CRC cells. Mechanism investigations showed 4c could induce cell cycle G2/M arrest by regulating cell cycle-associated proteins and could also up-regulate Fas cell surface death receptor. The virtual docking further pointed out that compounds 3d and 4c could nicely bind to the Fas/FADD death domain complex (ID: 3EZQ). Furthermore, silencing of Fas significantly enhanced the proliferation of CRC cells and attenuated the cytotoxicity induced by 4c. These results suggested 4c exerted its anticancer activity possibly regulating cell cycle and Fas death receptor. In summary, this study investigated the anticancer activity and mechanism of Loureirin analogues in CRC, suggesting these compounds may warrant further investigation as promising anticancer drug candidates for the treatment of CRC.
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  • 文章类型: Journal Article
    镁离子(Mg2+)在利用具有二磷酸基团的底物的II类萜烯环化酶中是至关重要的。有趣的是,这些酶催化不裂解二磷酸基团的反应,而是通过质子化引发反应。在我们最近的研究中,我们在showdoensis链霉菌中发现了一种新型的II类倍半萜环化酶。值得注意的是,我们确定了其晶体结构,并在其活性位点内鉴定了Mg2。这一发现揭示了先前难以捉摸的II类萜烯环化酶中Mg2结合的问题。在这一章中,我们概述了我们发现这种新型酶的方法,包括其纯化步骤,结晶,和动力学分析。
    Magnesium ions (Mg2+) are crucial in class II terpene cyclases that utilize substrates with diphosphate groups. Interestingly, these enzymes catalyze reactions without cleaving the diphosphate group, instead initiating the reaction through protonation. In our recent research, we discovered a novel class II sesquiterpene cyclase in Streptomyces showdoensis. Notably, we determined its crystal structure and identified Mg2+ within its active site. This finding has shed light on the previously elusive question of Mg2+ binding in class II terpene cyclases. In this chapter, we outline our methods for discovering this novel enzyme, including steps for its purification, crystallization, and kinetic analysis.
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  • 文章类型: Journal Article
    背景:雌性埃及伊蚊叮咬人类以获取产卵所需的血液营养时,可以传播致病病原体。全血餐后,寄主寻找被抑制,直到产卵。神经肽Y样受体7(NPYLR7)在内源性宿主寻求抑制中起作用,先前的工作确定了小分子NPYLR7激动剂,当以高微摩尔剂量喂食蚊子时,可抑制宿主寻求和采血。
    方法:使用结构-活性关系分析和结构指导设计,我们合成了128种与已知NPYLR7激动剂相似的化合物。
    结果:尽管体外效力(EC50)不能严格预测体内效应,我们确定了3种化合物,当饲喂1μM剂量的蚊子时,它们能减少活宿主的血液摄食,比原始参比化合物提高了100倍.
    结论:NPYLR7的外源激活代表了一种创新的媒介控制策略,可以阻止蚊子的叮咬行为并防止导致病原体传播的蚊子与人类宿主的相互作用。
    BACKGROUND: Female Aedes aegypti mosquitoes can spread disease-causing pathogens when they bite humans to obtain blood nutrients required for egg production. Following a complete blood meal, host-seeking is suppressed until eggs are laid. Neuropeptide Y-like receptor 7 (NPYLR7) plays a role in endogenous host-seeking suppression and previous work identified small-molecule NPYLR7 agonists that inhibit host-seeking and blood-feeding when fed to mosquitoes at high micromolar doses.
    METHODS: Using structure-activity relationship analysis and structure-guided design we synthesized 128 compounds with similarity to known NPYLR7 agonists.
    RESULTS: Although in vitro potency (EC50) was not strictly predictive of in vivo effect, we identified three compounds that reduced blood-feeding from a live host when fed to mosquitoes at a dose of 1 μM-a 100-fold improvement over the original reference compound.
    CONCLUSIONS: Exogenous activation of NPYLR7 represents an innovative vector control strategy to block mosquito biting behavior and prevent mosquito-human host interactions that lead to pathogen transmission.
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  • 文章类型: Journal Article
    乙型肝炎病毒(HBV)仍然是全球健康威胁。核糖核酸酶H(RNaseH),病毒聚合酶蛋白的一部分,在病毒基因组复制期间切割pgRNA模板。抑制RNaseH活性可防止(+)DNA链合成并导致非功能性基因组的积累,终止病毒复制周期。RNaseH,虽然很有希望,仍然是针对HBV的一个未充分探索的药物靶点。我们先前报道了一系列有效抑制HBVRNaseH的N-羟基吡啶二酮(HPD)亚胺的鉴定。在我们进一步探索HPD支架的努力中,我们设计的,合成,并评估了18种新型HPD肟,以及4种结构相关的米诺地尔衍生物和2种巴比妥酸对应物。将新的类似物停靠在RNaseH活性位点上,并且全部证明能够在催化位点中协调两个Mg2离子。所有新的HPD有效地抑制了细胞试验中的病毒复制表现出的EC50值在低μM范围(1.1-7.7μM)具有低细胞毒性,导致选择性指数(SI)高达92,是迄今为止报道的最高HBVRNaseH抑制剂之一。我们的发现扩展了HPD支架上的结构-活性关系,促进开发更有效的抗HBV药物。
    Hepatitis B virus (HBV) remains a global health threat. Ribonuclease H (RNase H), part of the virus polymerase protein, cleaves the pgRNA template during viral genome replication. Inhibition of RNase H activity prevents (+) DNA strand synthesis and results in the accumulation of non-functional genomes, terminating the viral replication cycle. RNase H, though promising, remains an under-explored drug target against HBV. We previously reported the identification of a series of N-hydroxypyridinedione (HPD) imines that effectively inhibit the HBV RNase H. In our effort to further explore the HPD scaffold, we designed, synthesized, and evaluated 18 novel HPD oximes, as well as 4 structurally related minoxidil derivatives and 2 barbituric acid counterparts. The new analogs were docked on the RNase H active site and all proved able to coordinate the two Mg2+ ions in the catalytic site. All of the new HPDs effectively inhibited the viral replication in cell assays exhibiting EC50 values in the low μM range (1.1-7.7 μM) with low cytotoxicity, resulting in selectivity indexes (SI) of up to 92, one of the highest reported to date among HBV RNase H inhibitors. Our findings expand the structure-activity relationships on the HPD scaffold, facilitating the development of even more potent anti-HBV agents.
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  • 文章类型: Journal Article
    钾通道最近已成为治疗癫痫疾病的合适靶标。在钾通道中,KCNT1通道被最广泛地表征为负责几种癫痫和发育性脑病。然而,到目前为止,KCNT1阻断剂的药物化学尚不发达。在本次审查中,我们描述和分析了解决KCNT1阻断剂开发和鉴定问题的论文,还证明了其中描述的科学方法的利弊。在简短介绍了癫痫性疾病和钾离子通道的结构功能之后,我们提供了到目前为止所描述的KCNT1阻断剂的化学型的广泛概述,以及用于识别它们的科学方法。
    Potassium channels have recently emerged as suitable target for the treatment of epileptic diseases. Among potassium channels, KCNT1 channels are the most widely characterized as responsible for several epileptic and developmental encephalopathies. Nevertheless, the medicinal chemistry of KCNT1 blockers is underdeveloped so far. In the present review, we describe and analyse the papers addressing the issue of KCNT1 blockers\' development and identification, also evidencing the pros and the cons of the scientific approaches therein described. After a short introduction describing the epileptic diseases and the structure-function of potassium channels, we provide an extensive overview of the chemotypes described so far as KCNT1 blockers, and the scientific approaches used for their identification.
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  • 文章类型: Journal Article
    两种新合成的次氮基三乙酸酯氧化钒(IV)盐的晶体结构,即[QH][VO(nta)(H2O)](H2O)2(I)和[(acr)H][VO(nta)(H2O)](H2O)2(II),决心。此外,四种N-杂环次氮基三乙酸氧化钒(IV)盐-1,10-菲咯啉的细胞毒性作用,[(phen)H][VO(nta)(H2O)](H2O)0.5(III),2,2'-联吡啶[(bpy)H][VO(nta)(H2O)](H2O)(IV),对两种新合成的化合物(I)和(II)进行了抗前列腺癌(PC3)和乳腺癌(MCF-7)细胞的评价。所有化合物对癌细胞和正常细胞(HaCaT人角质形成细胞)表现出强的细胞毒性作用。构效关系分析表明,反离子中共轭芳环的数量和排列对抗肿瘤作用有影响。化合物(III),1,10-菲咯啉类似物,展示了最伟大的活动,而吖啶盐(II),三个共轭芳香环的排列方式不同,毒性最低。化合物浓度的增加导致细胞周期分布的改变,在MCF-7和PC3细胞中具有不同的作用。在MCF-7细胞中,观察到化合物I和II阻断G2/M期,同时发现化合物III和IV将细胞周期阻滞在G0/G1期。在PC3单元格中,所有化合物都增加了G0/G1期细胞的比率。
    The crystal structures of two newly synthesized nitrilotriacetate oxidovanadium(IV) salts, namely [QH][VO(nta)(H2O)](H2O)2 (I) and [(acr)H][VO(nta)(H2O)](H2O)2 (II), were determined. Additionally, the cytotoxic effects of four N-heterocyclic nitrilotriacetate oxidovanadium(IV) salts-1,10-phenanthrolinium, [(phen)H][VO(nta)(H2O)](H2O)0.5 (III), 2,2\'-bipyridinium [(bpy)H][VO(nta)(H2O)](H2O) (IV), and two newly synthesized compounds (I) and (II)-were evaluated against prostate cancer (PC3) and breast cancer (MCF-7) cells. All the compounds exhibited strong cytotoxic effects on cancer cells and normal cells (HaCaT human keratinocytes). The structure-activity relationship analysis revealed that the number and arrangement of conjugated aromatic rings in the counterion had an impact on the antitumor effect. The compound (III), the 1,10-phenanthrolinium analogue, exhibited the greatest activity, whereas the acridinium salt (II), with a different arrangement of three conjugated aromatic rings, showed the lowest toxicity. The increased concentrations of the compounds resulted in alterations to the cell cycle distribution with different effects in MCF-7 and PC3 cells. In MCF-7 cells, compounds I and II were observed to block the G2/M phase, while compounds III and IV were found to arrest the cell cycle in the G0/G1 phase. In PC3 cells, all compounds increased the rates of cells in the G0/G1 phase.
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  • 文章类型: Journal Article
    这篇综述收集了穿心莲内酯的合成修饰,一种来自穿心莲的天然分子,用于肿瘤学应用。进行了各种药物调节,这些产品在不同的癌细胞系上进行了测试。分析了这些修改的影响,目的是绘制活动所必需的位置,以促进该领域的未来研究。然而,这项研究清楚地表明,除了分子的结构修饰,这可能会导致不同程度的靶向相互作用的有效性,通过半合成获得的结构的亲脂能力非常重要。
    This review collects the synthetic modifications performed on andrographolide, a natural molecule derived from Andrographis paniculata, for oncology applications. Various pharmacomodulations were carried out, and the products were tested on different cancer cell lines. The impact of these modifications was analyzed with the aim of mapping the positions essential for activity to facilitate future research in this field. However, this study makes it clear that, in addition to structural modifications of the molecule, which can result in varying degrees of effectiveness in targeting interactions, the lipophilic capacity of the structures obtained through hemisynthesis is of significant importance.
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