Structure-Activity Relationship

结构 - 活动关系
  • 文章类型: Journal Article
    传染病已成为长期威胁公众健康的危害问题。耐药病原体流行和感染病例日益增多,导致有效抗生素数量减少,这凸显了开发新抗菌剂的迫切需要。丝氨酸乙酰转移酶(SAT),在某些细菌物种中也被称为CysE,和O-乙酰丝氨酸巯基水解酶(OASS),在选择细菌中也被称为CysK,是各种病原微生物的半胱氨酸生物合成途径中不可或缺的酶。这些酶在这些病原体的生存中起着至关重要的作用,使SAT和OASS成为开发新的抗感染剂的有希望的目标。在这次全面审查中,我们介绍了SAT和OASS的结构和功能,以及现有的SAT和OASS抑制剂作为潜在的抗菌剂的概述。我们的主要重点是阐明抑制活性,结构-活动关系,以及这些抑制剂的作用机制。通过这次探索,我们的目标是为开发针对这些必需酶的抗菌剂提供有希望的策略和前景的见解。
    Infectious diseases have been jeopardized problem that threaten public health over a long period of time. The growing prevalence of drug-resistant pathogens and infectious cases have led to a decrease in the number of effective antibiotics, which highlights the urgent need for the development of new antibacterial agents. Serine acetyltransferase (SAT), also known as CysE in certain bacterial species, and O-acetylserine sulfhydrylase (OASS), also known as CysK in select bacteria, are indispensable enzymes within the cysteine biosynthesis pathway of various pathogenic microorganisms. These enzymes play a crucial role in the survival of these pathogens, making SAT and OASS promising targets for the development of novel anti-infective agents. In this comprehensive review, we present an introduction to the structure and function of SAT and OASS, along with an overview of existing inhibitors for SAT and OASS as potential antibacterial agents. Our primary focus is on elucidating the inhibitory activities, structure-activity relationships, and mechanisms of action of these inhibitors. Through this exploration, we aim to provide insights into promising strategies and prospects in the development of antibacterial agents that target these essential enzymes.
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  • 文章类型: Journal Article
    糖基化磷脂酰肌醇(GPI)锚定蛋白是真核细胞中普遍存在的翻译后修饰。GPI锚定蛋白(GPI-AP)在酶促、信令,监管,和粘附过程。超过20种酶参与GPI合成,附着在客户蛋白质上,依恋后的重塑。GPI转酰胺酶(GPI-T),一个位于内质网膜的大型复合体,通过用GPI替换前蛋白的C末端信号肽来催化附着步骤。在过去的三十年里,对转酰胺化反应的机理进行了广泛的研究,GPI-T复合体的组成部分,每个亚基的作用,和底物特异性。最近的两项研究报道了GPI-T的三维结构,它们代表了路径的第一个结构。这些结构提供了详细的组装机制,使先前的生化结果和亚基依赖性稳定性数据合理化。虽然结构数据证实了PIGK的催化作用,它可能使用胱天蛋白酶样机制来切割前蛋白,他们认为与以前提出的不同,GPAA1不是催化亚基。该结构还揭示了GPI结合的共享腔。有点出乎意料,PIGT,一种单程膜蛋白,在GPI识别中起着至关重要的作用。与组装机制和活动站点体系结构一致,大多数疾病突变发生在活性位点或亚基界面附近。最后,催化对偶位于距离GPI结合位点的膜界面约22埃外,并且这种结构可以通过底物和细长活性位点之间的拓扑匹配来赋予底物特异性。到目前为止进行的研究揭示了GPI锚定所涉及的复杂过程,并为GPI-T的进一步机理研究铺平了道路。
    Glycosylphosphatidylinositol (GPI) anchoring of proteins is a ubiquitous posttranslational modification in eukaryotic cells. GPI-anchored proteins (GPI-APs) play critical roles in enzymatic, signaling, regulatory, and adhesion processes. Over 20 enzymes are involved in GPI synthesis, attachment to client proteins, and remodeling after attachment. The GPI transamidase (GPI-T), a large complex located in the endoplasmic reticulum membrane, catalyzes the attachment step by replacing a C-terminal signal peptide of proproteins with GPI. In the last three decades, extensive research has been conducted on the mechanism of the transamidation reaction, the components of the GPI-T complex, the role of each subunit, and the substrate specificity. Two recent studies have reported the three-dimensional architecture of GPI-T, which represent the first structures of the pathway. The structures provide detailed mechanisms for assembly that rationalizes previous biochemical results and subunit-dependent stability data. While the structural data confirm the catalytic role of PIGK, which likely uses a caspase-like mechanism to cleave the proproteins, they suggest that unlike previously proposed, GPAA1 is not a catalytic subunit. The structures also reveal a shared cavity for GPI binding. Somewhat unexpectedly, PIGT, a single-pass membrane protein, plays a crucial role in GPI recognition. Consistent with the assembly mechanisms and the active site architecture, most of the disease mutations occur near the active site or the subunit interfaces. Finally, the catalytic dyad is located ~22 Å away from the membrane interface of the GPI-binding site, and this architecture may confer substrate specificity through topological matching between the substrates and the elongated active site. The research conducted thus far sheds light on the intricate processes involved in GPI anchoring and paves the way for further mechanistic studies of GPI-T.
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  • 文章类型: Journal Article
    红景天属,中国传统中药和藏医的组成部分,具有广泛的应用。这个属含有关键化合物,如人参皂苷,多糖,和类黄酮,具有抗炎作用,抗氧化剂,低血糖,免疫增强,和抗缺氧特性。作为一种重要的原材料,红景天在中国贡献了24种中成药和481种保健食品,在保健食品领域发现广泛应用。最近,多糖已成为天然产物研究的焦点,随着跨越医学的应用,食物,和材料部门。尽管如此,有必要对红景天属多糖(TGRP)的多糖进行全面和系统的综述。本研究对国内外文献进行了系统的回顾,评估红景天多糖的研究进展和化学功能价值。它涉及到隔离,净化,和鉴定各种均质多糖,然后详细分析它们的化学结构,药理活性,和分子机制,TGRP的构效关系(SAR)。讨论包括分子量的影响,单糖组成,以及它们的生物活性上的糖苷键,如硫酸化和羧甲基化等。这些分析对于加深对红景天的理解和促进TGRP的开发和开发至关重要。为进一步调查TGRP及其资源利用提供参考。
    The genus Rhodiola L., an integral part of traditional Chinese medicine and Tibetan medicine in China, exhibits a broad spectrum of applications. This genus contains key compounds such as ginsenosides, polysaccharides, and flavonoids, which possess anti-inflammatory, antioxidant, hypoglycaemic, immune-enhancing, and anti-hypoxic properties. As a vital raw material, Rhodiola L. contributes to twenty-four kinds of Chinese patent medicines and 481 health food products in China, finding extensive application in the health food sector. Recently, polysaccharides have emerged as a focal point in natural product research, with applications spanning the medicine, food, and materials sectors. Despite this, a comprehensive and systematic review of polysaccharides from the genus Rhodiola L. polysaccharides (TGRPs) is warranted. This study undertakes a systematic review of both domestic and international literature, assessing the research advancements and chemical functional values of polysaccharides derived from Rhodiola rosea. It involves the isolation, purification, and identification of a variety of homogeneous polysaccharides, followed by a detailed analysis of their chemical structures, pharmacological activities, and molecular mechanisms, structure-activity relationship (SAR) of TGRPs. The discussion includes the influence of molecular weight, monosaccharide composition, and glycosidic bonds on their biological activities, such as sulfation and carboxymethylation et al. Such analyses are crucial for deepening the understanding of Rhodiola rosea and for fostering the development and exploitation of TGRPs, offering a reference point for further investigations into TGRPs and their resource utilization.
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  • 文章类型: Journal Article
    C反应蛋白(CRP)是一种进化保守的血浆蛋白,在脊椎动物和许多无脊椎动物中发现。它是pentraxin超家族的成员,其特征在于其五聚体结构和钙依赖性结合配体如磷酸胆碱(PC)。在人类和其他各种物种中,在炎症期间,这种蛋白质的血浆浓度显着升高,将其确立为在先天免疫反应中起作用的典型急性期蛋白。该特征还可以在临床上用于评估生物体中炎症的严重程度。人类CRP(huCRP)由于构象转变而表现出相反的生物学功能,而CRP在各种物种中保留了体内保守的保护功能。本文的重点是CRP的结构特征,其表达的调节,激活补体,及其在体内相关疾病中的作用。
    C-reactive protein (CRP) is a plasma protein that is evolutionarily conserved, found in both vertebrates and many invertebrates. It is a member of the pentraxin superfamily, characterized by its pentameric structure and calcium-dependent binding to ligands like phosphocholine (PC). In humans and various other species, the plasma concentration of this protein is markedly elevated during inflammatory conditions, establishing it as a prototypical acute phase protein that plays a role in innate immune responses. This feature can also be used clinically to evaluate the severity of inflammation in the organism. Human CRP (huCRP) can exhibit contrasting biological functions due to conformational transitions, while CRP in various species retains conserved protective functions in vivo. The focus of this review will be on the structural traits of CRP, the regulation of its expression, activate complement, and its function in related diseases in vivo.
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  • 文章类型: Journal Article
    查耳酮和二氢查耳酮(DHCs)是分离自中药的重要生物活性天然产物(BNPs)。在这项研究中,13个查尔酮的设计灵感来自Loureirin,从ResinaDraconis中提取的DHC,并通过经典的Claisen-Schmidt反应合成。然后进行还原反应以获得相应的DHC。细胞毒性实验表明,查耳酮和DHC对大肠癌(CRC)细胞具有选择性的细胞毒性。这些化合物的初步结构-活性关系(SAR)表明α,查耳酮的β-不饱和酮对抗癌活性至关重要。有趣的是,化合物3d和4c对CRC细胞系HCT116表现出选择性抗癌活性,IC50为8.4和17.9μM,但不正常细胞。此外,4c还可以抑制CRC细胞的迁移和侵袭。机制研究表明,4c可以通过调节细胞周期相关蛋白诱导细胞周期G2/M阻滞,也可以上调Fas细胞表面死亡受体。虚拟对接进一步指出,化合物3d和4c可以很好地结合Fas/FADD死亡域复合物(ID:3EZQ)。此外,沉默Fas可显著增强CRC细胞的增殖,并减弱4c诱导的细胞毒性。这些结果表明4c发挥了其抗癌活性,可能调节细胞周期和Fas死亡受体。总之,这项研究调查了Loureirin类似物在CRC中的抗癌活性和机制,提示这些化合物作为有希望的候选抗癌药物用于CRC的治疗可能需要进一步研究.
    Chalcones and dihydrochalcones (DHCs) are important bioactive natural products (BNPs) isolated from traditional Chinese medicine. In this study, 13 chalcones were designed with the inspiration of Loureirin, a DHC extracted from Resina Draconis, and synthesized by classical Claisen-Schmidt reactions. Afterwards the reduction reactions were carried out to obtain the corresponding DHCs. Cytotoxicity assay indicated chalcones and DHCs possessed selective cytotoxicity against colorectal cancer (CRC) cells. The preliminary structure-activity relationships (SAR) of these compounds suggested the α, β-unsaturated ketone of the chalcones were crucial for the anticancer activity. Interestingly, compounds 3d and 4c exhibited selective anticancer activity against CRC cell line HCT116 with IC50s of 8.4 and 17.9 μM but not normal cell. Moreover, 4c could also inhibit the migration and invasion of CRC cells. Mechanism investigations showed 4c could induce cell cycle G2/M arrest by regulating cell cycle-associated proteins and could also up-regulate Fas cell surface death receptor. The virtual docking further pointed out that compounds 3d and 4c could nicely bind to the Fas/FADD death domain complex (ID: 3EZQ). Furthermore, silencing of Fas significantly enhanced the proliferation of CRC cells and attenuated the cytotoxicity induced by 4c. These results suggested 4c exerted its anticancer activity possibly regulating cell cycle and Fas death receptor. In summary, this study investigated the anticancer activity and mechanism of Loureirin analogues in CRC, suggesting these compounds may warrant further investigation as promising anticancer drug candidates for the treatment of CRC.
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  • 文章类型: Journal Article
    镁离子(Mg2+)在利用具有二磷酸基团的底物的II类萜烯环化酶中是至关重要的。有趣的是,这些酶催化不裂解二磷酸基团的反应,而是通过质子化引发反应。在我们最近的研究中,我们在showdoensis链霉菌中发现了一种新型的II类倍半萜环化酶。值得注意的是,我们确定了其晶体结构,并在其活性位点内鉴定了Mg2。这一发现揭示了先前难以捉摸的II类萜烯环化酶中Mg2结合的问题。在这一章中,我们概述了我们发现这种新型酶的方法,包括其纯化步骤,结晶,和动力学分析。
    Magnesium ions (Mg2+) are crucial in class II terpene cyclases that utilize substrates with diphosphate groups. Interestingly, these enzymes catalyze reactions without cleaving the diphosphate group, instead initiating the reaction through protonation. In our recent research, we discovered a novel class II sesquiterpene cyclase in Streptomyces showdoensis. Notably, we determined its crystal structure and identified Mg2+ within its active site. This finding has shed light on the previously elusive question of Mg2+ binding in class II terpene cyclases. In this chapter, we outline our methods for discovering this novel enzyme, including steps for its purification, crystallization, and kinetic analysis.
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  • 文章类型: Journal Article
    有机砷化合物如对氨基苯基芳基氧化物(p-APAO)更容易进行结构优化,以改善药物样性质,如药代动力学性质,治疗效果,和目标选择性。为了加强4-(1,3,2-二硫代arsinan-2-基)苯胺7对肿瘤细胞的选择性,硫脲部分用于增强抗癌活性。为了避免形成α/β端基异构体的混合物,2-乙酰基邻近组参与策略用于锁定2,3,4,6-四-O-乙酰基-β-d-吡喃葡萄糖基异硫氰酸酯与2,3,4,6-四-O-乙酰基-α-d-吡喃葡萄糖基溴化物的构型。1-(4-(1,3,2-二硫代亚辛烷-2-基)苯胺)-2-N-(2,3,4,6-四-O-乙酰基-β-d-吡喃葡萄糖-1-基)-硫脲2可增加人结肠癌细胞HCT-116的选择性(0.82±0.06μMvs.1.82±0.07μM)对人胚肾293T细胞(1.38±0.01μMvs.1.22±0.06μM)从0.67到1.68,提出了一种可行的方法来提高含砷化合物作为化学治疗剂的治疗指数。
    Organic arsenic compounds such as p-aminophenylarsine oxide (p-APAO) are easier for structural optimization to improve drug-like properties such as pharmacokinetic properties, therapeutic efficacy, and target selectivity. In order to strengthen the selectivity of 4-(1,3,2-dithiarsinan-2-yl) aniline 7 to tumor cell, a thiourea moiety was used to strengthen the anticancer activity. To avoid forming a mixture of α/β anomers, the strategy of 2-acetyl\'s neighboring group participation was used to lock the configuration of 2,3,4,6-tetra-O-acetyl-β-d-glucopyranosyl isothiocyanate from 2,3,4,6-tetra-O-acetyl-α-d-glucopyranosyl bromide. 1-(4-(1,3,2-dithiarsinan-2-yl) aniline)-2-N-(2,3,4,6-tetra-O-acetyl-β-d-glucopyranos-1-yl)-thiourea 2 can increase the selectivity of human colon cancer cells HCT-116 (0.82 ± 0.06 μM vs. 1.82 ± 0.07 μM) to human embryonic kidney 293T cells (1.38 ± 0.01 μM vs. 1.22 ± 0.06 μM) from 0.67 to 1.68, suggesting a feasible approach to improve the therapeutic index of arsenic-containing compounds as chemotherapeutic agents.
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  • 文章类型: Journal Article
    在这项研究中,旨在开发具有潜在生物活性的新型吡唑肟醚衍生物,32吡唑肟醚,包括取代的吡啶环,已经合成并通过1HNMR进行了结构鉴定,13CNMR,和HRMS。生物测定数据表明,这些化合物中的大多数对Mythimnaseparata具有很强的杀虫特性,灰心四虫,小菜蛾,以500μg/mL的剂量,一些标题化合物在500μg/mL时对Nilapavatalugens具有活性。此外,一些设计的化合物对M.separata具有有效的杀虫作用,T.Cinnabarinus,或100μg/mL的A.medicaginis,随着化合物8a的死亡率,8c,8d,8e,8f,8g,8o,8s,8v,8x,8z对抗A.medicaginis,特别是,全部达到100%。即使剂量降低到20μg/mL,化合物8s还对分离分枝杆菌表现出50%的杀虫活性,和化合物8a,8e,8f,8o,8v,8x对A.medicaginis的抑制率超过60%。目前的研究结果为未来生物活性吡唑肟醚的合理设计提供了重要的依据。
    In this research, with an aim to develop novel pyrazole oxime ether derivatives possessing potential biological activity, thirty-two pyrazole oxime ethers, including a substituted pyridine ring, have been synthesized and structurally identified through 1H NMR, 13C NMR, and HRMS. Bioassay data indicated that most of these compounds owned strong insecticidal properties against Mythimna separata, Tetranychus cinnabarinus, Plutella xylostella, and Aphis medicaginis at a dosage of 500 μg/mL, and some title compounds were active towards Nilaparvata lugens at 500 μg/mL. Furthermore, some of the designed compounds had potent insecticidal effects against M. separata, T. cinnabarinus, or A. medicaginis at 100 μg/mL, with the mortalities of compounds 8a, 8c, 8d, 8e, 8f, 8g, 8o, 8s, 8v, 8x, and 8z against A. medicaginis, in particular, all reaching 100%. Even when the dosage was lowered to 20 μg/mL, compound 8s also expressed 50% insecticidal activity against M. separata, and compounds 8a, 8e, 8f, 8o, 8v, and 8x displayed more than 60% inhibition rates against A. medicaginis. The current results provided a significant basis for the rational design of biologically active pyrazole oxime ethers in future.
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  • 文章类型: Journal Article
    四种新的二萜,异蛋白酶A-D(1-4),从Isodonserra(Maxim。)哈拉。基于HR-ESI-MS数据分析,阐明了新的二萜类化合物的结构,1D/2D-NMR-光谱数据,和电子圆二色性(ECD)计算。用MTT测定评价化合物2、3、5、6和9对HepG2和H1975细胞系的细胞毒性。因此,化合物2、3和6对HepG2细胞的细胞毒性水平高于对H1975细胞。此外,化合物6在抑制HepG2细胞增殖方面表现出最大的功效,IC50值为41.13±3.49μM。这种作用是通过以剂量依赖性方式诱导细胞凋亡来实现的。此外,简要讨论了这些化合物的结构和活性之间的关系。
    Four new diterpenoids, isodosins A-D (1-4), together with nine known compounds (5-13) were isolated and identified from the aerial parts of Isodon serra (Maxim.) Hara. The structures of the new diterpenoids were elucidated based on the analysis of HR-ESI-MS data, 1D/2D-NMR-spectroscopic data, and electronic circular dichroism (ECD) calculations. Cytotoxicities of compounds 2, 3, 5, 6, and 9 against the HepG2 and H1975 cell lines were evaluated with the MTT assay. As a result, compounds 2, 3, and 6 revealed higher levels of cytotoxicity against HepG2 cells than against H1975 cells. Moreover, compund 6 demonstrated the most efficacy in inhibiting the proliferation of HepG2 cells, with an IC50 value of 41.13 ± 3.49 μM. This effect was achieved by inducing apoptosis in a dose-dependent manner. Furthermore, the relationships between the structures and activities of these compounds are briefly discussed.
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  • 文章类型: Journal Article
    含有SPRY结构域的SOCS盒蛋白SPSB1,SPSB2和SPSB4利用其SPRY/B30.2结构域与诱导型一氧化氮合酶(iNOS)的N末端的短区相互作用,并招募E3泛素连接酶复合物以聚泛素化iNOS,导致iNOS的蛋白酶体降解。可以破坏内源性SPSB-iNOS相互作用的抑制剂可用于增加细胞NO的产生,并可能具有抗菌和抗癌活性。我们以前报道了环肽抑制剂的合理设计,cR8,循环(RGDINNNV),以中等亲和力与SPSB2结合。我们,因此,寻求开发具有更高亲和力的SPSB抑制剂。这里,我们显示环状肽cR7,环状(RGDINNN),和cR9,循环(RGDINNVE),具有〜6.5倍和〜2倍,分别,SPSB2-bindng亲和力高于cR8。我们确定了SPSB2-cR7和SPSB2-cR9复合物的高分辨率晶体结构,这使得能够很好地理解这些环肽抑制剂的结构-活性关系。此外,我们显示这些环肽取代了SPSB2,SPSB1和SPSB4的全长iNOS,并且它们的抑制效力与其SPSB2结合亲和力密切相关。观察到cR7对所有三种iNOS结合SPSB蛋白的最强抑制作用。
    The SPRY domain-containing SOCS box proteins SPSB1, SPSB2, and SPSB4 utilize their SPRY/B30.2 domain to interact with a short region in the N-terminus of inducible nitric oxide synthase (iNOS), and recruit an E3 ubiquitin ligase complex to polyubiquitinate iNOS, resulting in the proteasomal degradation of iNOS. Inhibitors that can disrupt the endogenous SPSB-iNOS interactions could be used to augment cellular NO production, and may have antimicrobial and anticancer activities. We previously reported the rational design of a cyclic peptide inhibitor, cR8, cyclo(RGDINNNV), which bound to SPSB2 with moderate affinity. We, therefore, sought to develop SPSB inhibitors with higher affinity. Here, we show that cyclic peptides cR7, cyclo(RGDINNN), and cR9, cyclo(RGDINNNVE), have ~6.5-fold and ~2-fold, respectively, higher SPSB2-bindng affinities than cR8. We determined high-resolution crystal structures of the SPSB2-cR7 and SPSB2-cR9 complexes, which enabled a good understanding of the structure-activity relationships for these cyclic peptide inhibitors. Moreover, we show that these cyclic peptides displace full-length iNOS from SPSB2, SPSB1, and SPSB4, and that their inhibitory potencies correlate well with their SPSB2-binding affinities. The strongest inhibition was observed for cR7 against all three iNOS-binding SPSB proteins.
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