Structural diversity

结构多样性
  • 文章类型: Journal Article
    碳水化合物,这是重要的饮食成分,通过微生物酶进行消化和肠道发酵,以产生有益的短链脂肪酸。某些碳水化合物选择性地调节肠道微生物群,影响主机健康。肠道微生物群内的碳水化合物活性酶显著有助于碳水化合物利用和微生物多样性。尽管它们很重要,碳水化合物的结构复杂性提出了分析挑战。然而,最近的进步,特别是,质谱,允许它们的表征和功能分析。这篇综述探讨了饮食碳水化合物与肠道微生物群之间的复杂关系,强调先进分析技术在理解其多样性和含义方面的关键作用。这些进步为碳水化合物生物活性提供了有价值的见解。将高通量分析与下一代测序相结合,可以更深入地了解肠道微生物的相互作用。潜在揭示哪些碳水化合物结构对肠道健康有益。
    Carbohydrates, which are a vital dietary component, undergo digestion and gut fermentation through microbial enzymes to produce beneficial short-chain fatty acids. Certain carbohydrates selectively modulate the gut microbiota, impacting host health. Carbohydrate-active enzymes within the gut microbiota significantly contribute to carbohydrate utilization and microbial diversity. Despite their importance, the structural complexity of carbohydrates poses analytical challenges. However, recent advancements, notably, mass spectrometry, have allowed for their characterization and functional analysis. This review examines the intricate relationship between dietary carbohydrates and the gut microbiota, highlighting the crucial role of advanced analytical techniques in understanding their diversity and implications. These advancements provide valuable insights into carbohydrate bioactivity. Integrating high-throughput analysis with next-generation sequencing provides deeper insights into gut microbial interactions, potentially revealing which carbohydrate structures are beneficial for gut health.
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  • 文章类型: Journal Article
    钛配位聚合物的研究领域仍处于起步阶段,在配位化学领域提出了严峻的挑战。近几十年来,重点主要是操纵溶液中的钛反应,导致合成约60种目标化合物。尽管记录的实例数量有限,这些材料展示了各种各样的结构,包括1D链,2D图层,和3D框架。这表明在未来的研究中可能会微调协调模式和结构特征。此外,钛配位聚合物不仅具有光活性和光响应性能,而且还具有各种其他重要应用的前景。本文提供了详尽的综述,追踪了钛配位聚合物发展的演变,同时提供了最新进展的最新信息。这篇综述概述了报告的综合策略,方法论,结构多样性,和相关的应用程序。此外,它深入研究了需要关注未来进展的关键问题,并提出了有效推动这一研究领域加速发展的潜在途径。
    The realm of titanium coordination polymer research is still in its nascent stages and presents a formidable challenge in the field of coordination chemistry. In recent decades, the focus has predominantly been on manipulating titanium reactions in solution, resulting in the synthesis of ≈60 targeted compounds. Despite the limited number of documented instances, these materials showcase a diverse array of structures, encompassing 1D chains, 2D layers, and 3D frameworks. This suggests potential for fine-tuning coordination modes and structural features in future investigations. Moreover, titanium coordination polymers not only exhibit photo-active and photo-responsive properties but also hold promise for various other significant applications. This article offers an exhaustive review tracing the evolution of titanium coordination polymer development while providing an update on recent advancements. The review encompasses a synopsis of reported synthetic strategies, methodologies, structural diversity, and associated applications. Additionally, it delves into critical issues that necessitate attention for future progressions and proposes potential avenues to effectively propel this research field forward at an accelerated pace.
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  • 文章类型: Journal Article
    聚合物基质中的无定形固体分散体(ASD)是一种有效的方法,可以增强其他晶体的溶解度和生物利用度,水溶性差的药物。6-纤维素乙酸丁酸酯(CCAB)是相对新的商业纤维素衍生物,其被引入用于水性涂料应用中。由于CCAB是两亲性的,含羧基,高玻璃化转变温度(Tg)聚合物,优异的ASD聚合物性能所必需的特性,我们选择探索其ASD潜力。结构不同的药物槲皮素,布洛芬,利托那韦,氯雷他定,和克拉霉素分散在CCAB基质中。我们评估了CCAB用这些药物产生ASD的能力及其提供溶解度增强和有效药物释放的能力。通过喷雾干燥制备的CCAB/药物分散体是无定形的,高达25重量%的药物,与氯雷他定保持无定形高达50%的药物。具有10%药物的CCAB制剂被证明可有效增强结晶类黄酮药物槲皮素和利托那韦的体外溶解度,但不为更易溶的原料药布洛芬和克拉霉素和更疏水性的氯雷他定。CCAB确实提供了布洛芬的缓慢和受控释放,提供一个简单和有前途的长期布洛芬制剂。含有克拉霉素的制剂显示出聚合物在胃pH下防止药物降解的能力。此外,CCABASD与氯雷他定和布洛芬都可以通过添加水溶性聚合物聚(乙烯基吡咯烷酮)(PVP),与CCAB表现出良好的混溶性。CCAB在某些情况下提供溶解度增强,CCAB表现出较慢的药物释放,尤其是在胃里,可能特别有益,例如,在含有布洛芬等已知胃刺激物的制剂中。
    Amorphous solid dispersion (ASD) in a polymer matrix is a powerful method for enhancing the solubility and bioavailability of otherwise crystalline, poorly water-soluble drugs. 6-Carboxycellulose acetate butyrate (CCAB) is a relatively new commercial cellulose derivative that was introduced for use in waterborne coating applications. As CCAB is an amphiphilic, carboxyl-containing, high glass transition temperature (Tg) polymer, characteristics essential to excellent ASD polymer performance, we chose to explore its ASD potential. Structurally diverse drugs quercetin, ibuprofen, ritonavir, loratadine, and clarithromycin were dispersed in CCAB matrices. We evaluated the ability of CCAB to create ASDs with these drugs and its ability to provide solubility enhancement and effective drug release. CCAB/drug dispersions prepared by spray drying were amorphous up to 25 wt % drug, with loratadine remaining amorphous up to 50% drug. CCAB formulations with 10% drug proved effective at providing in vitro solubility enhancement for the crystalline flavonoid drug quercetin as well as ritonavir, but not for the more soluble APIs ibuprofen and clarithromycin and the more hydrophobic loratadine. CCAB did provide slow and controlled release of ibuprofen, offering a simple and promising Long-duration ibuprofen formulation. Formulation with clarithromycin showed the ability of the polymer to protect against degradation of the drug at stomach pH. Furthermore, CCAB ASDs with both loratadine and ibuprofen could be improved by the addition of the water-soluble polymer poly(vinylpyrrolidone) (PVP), with which CCAB shows good miscibility. CCAB provided solubility enhancement in some cases, and the slower drug release exhibited by CCAB, especially in the stomach, could be especially beneficial, for example, in formulations containing known stomach irritants like ibuprofen.
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  • 文章类型: Journal Article
    植被通过蒸发等生物物理机制调节小气候稳定性,蒸腾作用和阴影。因此,以树木为主的栖息地的热条件通常与标准化的自由空气温度测量有很大不同。森林缓冲温度的能力使它们成为无法忍受气候变化所建立的日益具有挑战性的热条件的树种的潜在庇护所。尽管已经确定了许多影响植被覆盖下的热条件的因素,三维植被结构在调节林下小气候中的作用仍未得到研究。遥感技术的最新进展,例如地面激光扫描,使科学家能够高精度地捕获植被的三维结构异质性。这里,我们研究了从体素激光扫描点云参数化的植被结构之间的关系,空气和土壤温度范围,以及肯尼亚东南部热带山区生态系统中17个地点的现场测量温度和网格自由空气温度估计值之间的偏移量。结构多样性通常会对林下温度产生冷却作用,但垂直多样性和分层解释了更多的变化在林下空气和土壤温度范围(30%-40%)比树冠覆盖(27%),植物面积指数(24%)和平均林高(23%)。我们还观察到分层的综合效应,树冠覆盖和海拔解释了林下空气温度范围变化的一半以上(53%)。分层的衰减效应在不同的海拔水平上是一致的。现场测量和自由空气估计之间的温度偏移主要由海拔控制,但是分层和结构多样性是最大和中值温度偏移的影响因素。此外,稳定的林下温度与白天最高温度的大幅偏移密切相关,这表明结构多样性主要通过冷却白天的最高温度来促进热稳定性。我们的发现揭示了垂直植被结构的热影响,在热带土地利用变化的背景下,建议旨在减轻土地转换的热影响的决策者应优先考虑通过保留不均匀年龄的树木和混合不同大小的植物物种来保持结构多样性的管理实践,例如,silvopastoral,或农林系统。
    Vegetation regulates microclimate stability through biophysical mechanisms such as evaporation, transpiration and shading. Therefore, thermal conditions in tree-dominated habitats will frequently differ significantly from standardized free-air temperature measurements. The ability of forests to buffer temperatures nominates them as potential sanctuaries for tree species intolerant to the increasingly challenging thermal conditions established by climate change. Although many factors influencing thermal conditions beneath the vegetation cover have been ascertained, the role of three-dimensional vegetation structure in regulating the understory microclimate remains understudied. Recent advances in remote sensing technologies, such as terrestrial laser scanning, have allowed scientists to capture the three-dimensional structural heterogeneity of vegetation with a high level of accuracy. Here, we examined the relationships between vegetation structure parametrized from voxelized laser scanning point clouds, air and soil temperature ranges, as well as offsets between field-measured temperatures and gridded free-air temperature estimates in 17 sites in a tropical mountain ecosystem in Southeast Kenya. Structural diversity generally exerted a cooling effect on understory temperatures, but vertical diversity and stratification explained more variation in the understory air and soil temperature ranges (30%-40%) than canopy cover (27%), plant area index (24%) and average stand height (23%). We also observed that the combined effects of stratification, canopy cover and elevation explained more than half of the variation (53%) in understory air temperature ranges. Stratification\'s attenuating effect was consistent across different levels of elevation. Temperature offsets between field measurements and free-air estimates were predominantly controlled by elevation, but stratification and structural diversity were influential predictors of maximum and median temperature offsets. Moreover, stable understory temperatures were strongly associated with a large offset in daytime maximum temperatures, suggesting that structural diversity primarily contributes to thermal stability by cooling daytime maximum temperatures. Our findings shed light on the thermal influence of vertical vegetation structure and, in the context of tropical land-use change, suggest that decision-makers aiming to mitigate the thermal impacts of land conversion should prioritize management practices that preserve structural diversity by retaining uneven-aged trees and mixing plant species of varying sizes, e.g., silvopastoral, or agroforestry systems.
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  • 文章类型: Journal Article
    不断升级的抗生素耐药性(AMR)危机凸显了对新型抗生素的迫切需求。一个有前途的策略是探索结构多样性,因为不同的结构可以导致不同的生物活性和作用机制。这篇综述探讨了结构多样性在抗菌药物发现中的作用。强调其对目标选择性等因素的影响,结合亲和力,药代动力学特性,以及克服抵抗机制的能力。我们讨论了探索结构多样性的各种方法,包括组合化学,面向多样性的综合,和天然产物筛选,并概述了抗菌药物的常见作用机制。我们还描述了调查这些机制的技术,比如基因组学,蛋白质组学,结构生物学。尽管取得了重大进展,仍然存在一些挑战,包括各种化合物库的合成,活性化合物的鉴定,阐明复杂的作用机制,AMR的出现,以及将实验室发现转化为临床应用。然而,新兴趋势和技术,比如人工智能,高通量筛选,下一代测序,和开源药物发现,为克服这些挑战提供新的途径。展望未来,我们设想了一个令人兴奋的未来,以结构多样性为导向的抗微生物发现,有机会扩大化学空间,利用自然的力量,深化我们对行动机制的理解,走向个性化医疗和合作药物发现。当我们面对AMR的持续挑战时,结构多样性的探索对于我们寻找新的和有效的抗菌药物至关重要。
    The escalating crisis of antimicrobial resistance (AMR) underscores the urgent need for novel antimicrobials. One promising strategy is the exploration of structural diversity, as diverse structures can lead to diverse biological activities and mechanisms of action. This review delves into the role of structural diversity in antimicrobial discovery, highlighting its influence on factors such as target selectivity, binding affinity, pharmacokinetic properties, and the ability to overcome resistance mechanisms. We discuss various approaches for exploring structural diversity, including combinatorial chemistry, diversity-oriented synthesis, and natural product screening, and provide an overview of the common mechanisms of action of antimicrobials. We also describe techniques for investigating these mechanisms, such as genomics, proteomics, and structural biology. Despite significant progress, several challenges remain, including the synthesis of diverse compound libraries, the identification of active compounds, the elucidation of complex mechanisms of action, the emergence of AMR, and the translation of laboratory discoveries to clinical applications. However, emerging trends and technologies, such as artificial intelligence, high-throughput screening, next-generation sequencing, and open-source drug discovery, offer new avenues to overcome these challenges. Looking ahead, we envisage an exciting future for structural diversity-oriented antimicrobial discovery, with opportunities for expanding the chemical space, harnessing the power of nature, deepening our understanding of mechanisms of action, and moving toward personalized medicine and collaborative drug discovery. As we face the continued challenge of AMR, the exploration of structural diversity will be crucial in our search for new and effective antimicrobials.
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  • 文章类型: Journal Article
    在天然产物的多样化和生物活性中起着关键作用。本研究提出了TolF的功能表征,来自Tolypocladiuminflatum的多种异戊二烯基转移酶。tolF在米曲霉中的异源表达,再加上用帕西林喂养转化的菌株,导致生产20-和22-异戊烯基帕西林。此外,TolF展示了戊烯化还原形式的帕索林的能力,β-帕西三醇。来自Chaunopycnisalba的相关异戊烯基转移酶TerF,表现出相似的底物耐受性和区域选择性。使用纯化的重组酶TolF和TerF进行的体外酶测定证实了它们催化帕索林异戊二烯化的能力,β-帕西三醇,和terpendoleI根据以前的报告,terpendole我应该被认为是天然底物。这项工作不仅增强了我们对吲哚二萜生物合成中异戊二烯化反应的分子基础和产物多样性的理解,而且还提供了有关真菌吲哚二萜戊烯基转移酶改变其戊烯化位置特异性的潜力的见解。这可能适用于工业上有用的化合物的合成,包括生物活性化合物,从而为开发新的生物合成策略和药物开辟了新的途径。关键点:•该研究将TolF表征为来自Tolypocladiuminflatum的多重异戊烯基转移酶。•与TolF相比,来自Chaunopycnisalba的TerF显示出相似的底物耐受性和区域选择性。•该研究提供了对真菌吲哚二萜异戊二烯基转移酶的潜在应用的见解。
    Prenylation plays a pivotal role in the diversification and biological activities of natural products. This study presents the functional characterization of TolF, a multiple prenyltransferase from Tolypocladium inflatum. The heterologous expression of tolF in Aspergillus oryzae, coupled with feeding the transformed strain with paxilline, resulted in the production of 20- and 22-prenylpaxilline. Additionally, TolF demonstrated the ability to prenylated the reduced form of paxilline, β-paxitriol. A related prenyltransferase TerF from Chaunopycnis alba, exhibited similar substrate tolerance and regioselectivity. In vitro enzyme assays using purified recombinant enzymes TolF and TerF confirmed their capacity to catalyze prenylation of paxilline, β-paxitriol, and terpendole I. Based on previous reports, terpendole I should be considered a native substrate. This work not only enhances our understanding of the molecular basis and product diversity of prenylation reactions in indole diterpene biosynthesis, but also provides insights into the potential of fungal indole diterpene prenyltransferase to alter their position specificities for prenylation. This could be applicable for the synthesis of industrially useful compounds, including bioactive compounds, thereby opening up new avenues for the development of novel biosynthetic strategies and pharmaceuticals. KEY POINTS: • The study characterizes TolF as a multiple prenyltransferase from Tolypocladium inflatum. • TerF from Chaunopycnis alba shows similar substrate tolerance and regioselectivity compared to TolF. • The research offers insights into the potential applications of fungal indole diterpene prenyltransferases.
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  • 文章类型: Journal Article
    对美味和健康食品的需求不断增长,推动了低热量甜味剂的发展,甜味调节剂,和苦味掩蔽化合物起源于天然来源。随着人类味觉受体的发现,越来越多的甜味调节剂已经通过人类味觉反应和分子对接技术被鉴定。然而,通过使用基于结构-活性关系(SARs)的先进光谱技术,可以加速自然界中新型味觉活性分子的发现。SAR解释了为什么结构相似的化合物可以引起相似的味道品质。鉴于来自报告数据的结构信息的表征,采用SAR技术寻找结构相似的化合物的策略成为一种创新的方法来扩大甜味剂的知识。这篇综述旨在总结已知的天然非营养甜味剂的结构模式,甜味增强剂,和苦味掩蔽化合物。还讨论了基于SAR的创新方法来探索甜味剂衍生物。大多数甜味类黄酮属于黄烷醇或二氢查耳酮,已知的苦味掩蔽分子是黄烷酮。根据SAR的发现,结构相似性与感官特性有关,本文描述的创新方法可用于筛选和发现味觉活性化合物或潜在味觉调节剂的衍生物。
    Growing demand for the tasty and healthy food has driven the development of low-calorie sweeteners, sweet taste modulators, and bitter masking compounds originated from natural sources. With the discovery of human taste receptors, increasing numbers of sweet taste modulators have been identified through human taste response and molecular docking techniques. However, the discovery of novel taste-active molecules in nature can be accelerated by using advanced spectrometry technologies based on structure-activity relationships (SARs). SARs explain why structurally similar compounds can elicit similar taste qualities. Given the characterization of structural information from reported data, strategies employing SAR techniques to find structurally similar compounds become an innovative approach to expand knowledge of sweeteners. This review aims to summarize the structural patterns of known natural non-nutritive sweeteners, sweet taste enhancers, and bitter masking compounds. Innovative SAR-based approaches to explore sweetener derivatives are also discussed. Most sweet-tasting flavonoids belong to either the flavanonols or the dihydrochalcones and known bitter masking molecules are flavanones. Based on SAR findings that structural similarities are related to the sensory properties, innovative methodologies described in this paper can be applied to screen and discover the derivatives of taste-active compounds or potential taste modulators.
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  • 文章类型: Journal Article
    Austin于1976年首次作为一种新型的聚异戊二烯类霉菌毒素从乌斯曲霉中分离出来。随后,不断发现一些新的奥斯丁型黄酮类化合物(ATMT)。这篇综述试图对隔离的进展进行全面总结,化学结构特征,生物活动,从1976年10月至2023年1月,报告了来自5属陆地和海洋衍生真菌的104种新型ATMT的真菌生物多样性。青霉属和曲霉属是两个主要的生产者,生产63.5%和30.8%的ATMT,分别。此外,约26.9%的ATMT表现出各种显著的生物活性,包括杀虫,抗炎,细胞毒性,抗菌,和PTP1B抑制活性。为了更好地理解这些新型真菌ATMT的化学多样性和潜在活性,并对来源真菌及其分类学进行了相关总结,以阐明奥斯丁型黄酮类化合物的未来发展和研究。
    Austin was first isolated as a novel polyisoprenoid mycotoxin from Aspergillus ustus in 1976. Subsequently, some new austin-type meroterpenoids (ATMTs) have been continually found. This review attempts to give a comprehensive summary of progress on the isolation, chemical structural features, biological activities, and fungal biodiversity of 104 novel ATMTs from 5 genera of terrestrial- and marine-derived fungi reported from October 1976 to January 2023. The genera of Penicillium and Aspergillus are the two dominant producers, producing 63.5% and 30.8% of ATMTs, respectively. Moreover, about 26.9% of ATMTs display various pronounced bioactivities, including insecticidal, anti-inflammatory, cytotoxicity, antibacterial, and PTP1B inhibitory activities. The chemical diversity and potential activities of these novel fungal ATMTs are reviewed for a better understanding, and a relevant summary focusing on the source fungi and their taxonomy is provided to shed light on the future development and research of austin-type meroterpenoids.
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  • 文章类型: Journal Article
    二苯并呋喃是一类具有多种生物活性的小类天然产物,过去被认为主要来自地衣和子囊菌。事实上,它们也广泛分布在高等植物中,尤其是在玫瑰科和桃金娘科中。地衣和子囊菌的二苯并呋喃及其衍生物已经得到了很好的评价,但来自自然界中所有生物来源的二苯并呋喃尚未被审查。在这次审查中,对所有天然来源的二苯并呋喃进行了全面审查,对1843年至2023年3月之间从生物中分离和鉴定的211种二苯并呋喃进行了分类和讨论,包括它们的生物合成,结构多样性,来源,和生物活动。
    Dibenzofurans are a small class of natural products with versatile biological activities that used to be thought to come mainly from lichens and ascomycetes. In fact, they are also distributed widely in higher plants, especially in the families Rosaceae and Myrtaceae. Dibenzofurans and derivatives from lichens and ascomycetes have been well reviewed, but dibenzofurans from all biological sources in nature have not been reviewed. In this review, dibenzofurans from all natural sources have been comprehensively reviewed, and a total of 211 dibenzofurans isolated and identified from organisms between 1843 and March 2023 are categorized and discussed, including their biosynthesis, structural diversity, sources, and bioactivities.
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  • 文章类型: Journal Article
    Keap1-Nrf2-ARE信号通路是通过激活细胞保护酶和蛋白质的细胞表达来预防和治疗氧化应激相关疾病的有吸引力的治疗靶标。小分子抑制剂可以直接破坏Keap1-Nrf2蛋白-蛋白相互作用(PPI),导致Nrf2蛋白水平升高,随后刺激相关的抗氧化反应。以前,我们发现1,4-双(芳基磺酰氨基)苯或萘-N,在苯或萘核上具有醚型C2取代基的N'-二乙酸衍生物表现出有效的抑制活性,IC50在亚微摩尔或纳摩尔范围内。我们在这里描述了围绕包含各种极性接头的C2取代基的更详细的结构-活性关系研究,从而对它们与Keap1Kelch结构域的结合相互作用产生了新的见解。我们发现的关键观察是,苯或萘支架C2位的取代基会影响其在生化测定中的抑制效力以及在细胞培养中的活性。生化FP和TR-FRET测定显示,在C2处具有额外羧酸盐的萘衍生物17b和18是针对Keap1-Nrf2PPI的最具活性的抑制剂。在基于细胞的检测中,这两种化合物被证明是Nrf2依赖性基因转录的有效Nrf2激活剂,例如HMOX2、GSTM3和NQO1。
    The Keap1-Nrf2-ARE signaling pathway is an attractive therapeutic target for the prevention and treatment of oxidative stress-associated diseases by activating the cellular expression of cytoprotective enzymes and proteins. Small molecule inhibitors can directly disrupt the Keap1-Nrf2 protein-protein interaction (PPI), resulting in elevated levels of Nrf2 protein and subsequent stimulation of related antioxidant responses. Previously, we found that 1,4-bis(arylsulfonamido)benzene or naphthalene-N,N\'-diacetic acid derivatives with an ether type C2-substituent on the benzene or naphthalene core exhibited potent inhibitory activities with IC50\'s in the submicromolar or nanomolar range. We here describe a more detailed structure-activity relationship study around the C2 substituents containing various polar linkers shedding new insight on their binding interactions with the Keap1 Kelch domain. The key observation from our findings is that the substituents at the C2-position of the benzene or naphthalene scaffold impact their inhibitory potencies in biochemical assays as well as activities in cell culture. The biochemical FP and TR-FRET assays revealed that the naphthalene derivatives 17b and 18 with an additional carboxylate at the C2 were the most active inhibitors against Keap1-Nrf2 PPI. In the cell-based assay, the two compounds were shown to be potent Nrf2 activators of the transcription of the Nrf2-dependent genes, such as HMOX2, GSTM3, and NQO1.
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