Streptococcus pneumoniae

肺炎链球菌
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    文章类型: Journal Article
    Vaccination programs have proven successful in the prevention and control of infectious diseases among children on a global scale, but the majority of adult populations remain unvaccinated. immunocompromised adults as well as older adults aged low-income countries as Streptococcus pneumoniae infections are associated with substantial morbidity and mortality among 65 years and above. Despite the introduction of pneumococcal conjugate vaccines (PCVs), the burden of vaccine-type serotypes remains high in there are no clear policies for adult vaccination. As per the Global Burden of Disease 2019 report, about 120,000 individuals aged 70 years and older died as a result of LRTIs) in sub-Saharan Africa. A medical advisory board meeting was conducted in April 2022 to discuss the burden of pneumococcal diseases in adults, the current status of policies and practices of adult vaccination, unmet needs, and challenges in Ghana. This expert opinion paper outlines the pneumococcal epidemiology and burden of disease in Ghana, as well as the rationale for adult pneumococcal vaccination. It also highlights the potential barriers to adult vaccination and offers recommendations to overcome these obstacles and enhance vaccine acceptance in Ghana.
    Les programmes de vaccination ont prouvé leur succès dans la prévention et le contrôle des maladies infectieuses chez les enfants à l\'échelle mondiale, mais la majorité des populations adultes restent non vaccinées. Les infections à Streptococcus pneumoniae sont associées à une morbidité et une mortalité substantielles chez les adultes immunodéprimés ainsi que chez les personnes âgées de 65 ans et plus. Malgré l\'introduction des vaccins conjugués contre le pneumocoque (VCP), la charge des sérotypes vaccinaux reste élevée dans les pays à faible revenu car il n\'existe pas de politiques claires en matière de vaccination des adultes. Selon le rapport sur la charge mondiale de morbidité de 2019, environ 120 000 personnes âgées de 70 ans et plus sont décédées des suites d\'infections des voies respiratoires inférieures (IVRI) en Afrique subsaharienne. Une réunion du conseil consultatif médical a eu lieu en avril 2022 pour discuter du fardeau des maladies pneumococciques chez les adultes, de l\'état actuel des politiques et pratiques de vaccination des adultes, des besoins non satisfaits et des défis au Ghana. Cet article d\'opinion d\'experts présente l\'épidémiologie pneumococcique et le fardeau de la maladie au Ghana, ainsi que les arguments en faveur de la vaccination pneumococcique des adultes. Il met également en lumière les obstacles potentiels à la vaccination des adultes et propose des recommandations pour surmonter ces obstacles et améliorer l\'acceptation des vaccins au Ghana. MOTS-CLÉS: Maladie pneumococcique, Fardeau de la maladie, Vaccin conjugué contre le pneumocoque, Vaccination des adultes, Streptococcus pneumoniae, Ghana, Défis de la vaccination, Immunisation des adultes, VCP-13, Pneumonie acquise en communauté.
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  • 文章类型: Journal Article
    背景:侵袭性肺炎球菌病(IPD)与高发病率相关,死亡率,和全世界的医疗费用,特别是在拉丁美洲和加勒比(LAC)。关于导致IPD的血清型分布和肺炎球菌疫苗接种的影响的监测是监测疾病活动趋势的重要流行病学工具。告知公共卫生决策,落实相关防控措施。
    目的:评估IPD的血清型分布和LAC的相关疾病负担,during,以及在LAC实施肺炎球菌疫苗免疫程序后。
    方法:根据Cochrane方法对LAC的研究进行系统文献综述。随着时间的推移,我们评估了肺炎球菌疫苗对因肺炎球菌疾病和血清型特异性疾病导致住院期间或住院后的住院和死亡的影响。我们还分析了肺炎球菌结合疫苗PCV10和PCV13中血清分型IPD的发生率。该协议在PROSPERO(ID:CRD42023392097)中注册。
    结果:对155项流行病学研究进行了筛选,并提供了关于IPD的流行病学数据。对<5岁儿童侵袭性疾病的Meta分析发现,PCV10和PCV13分别占57%-65%和66%-84%的致病血清型。PCV引入后,疫苗血清型在IPD中下降,非疫苗血清型的出现因国家而异。
    结论:肺炎球菌结合疫苗显著降低了IPD,并改变了拉丁美洲和加勒比地区的血清型分布。PCV10/PCV13覆盖了5岁以下儿童的57-84%的血清型,疫苗接种后PCV血清型显着下降。持续监测对于监测不断变化的血清型和告知公共卫生行动仍然至关重要。
    BACKGROUND: Invasive pneumococcal diseases (IPD) are associated with high morbidity, mortality, and health costs worldwide, particularly in Latin America and the Caribbean (LAC). Surveillance about the distribution of serotypes causing IPD and the impact of pneumococcal vaccination is an important epidemiological tool to monitor disease activity trends, inform public health decision-making, and implement relevant prevention and control measures.
    OBJECTIVE: To estimate the serotype distribution for IPD and the related disease burden in LAC before, during, and after implementing the pneumococcal vaccine immunization program in LAC.
    METHODS: Systematic literature review following Cochrane methods of studies from LAC. We evaluated the impact of the pneumococcal vaccine on hospitalization and death during or after hospitalizations due to pneumococcal disease and serotype-specific disease over time. We also analyzed the incidence of serotyped IPD in pneumococcal conjugate vaccine PCV10 and PCV13. The protocol was registered in PROSPERO (ID: CRD42023392097).
    RESULTS: 155 epidemiological studies were screened and provided epidemiological data on IPD. Meta-analysis of invasive diseases in children <5 years old found that 57%-65% of causative serotypes were included in PCV10 and 66%-84% in PCV13. After PCV introduction, vaccine serotypes declined in IPD, and the emergence of non-vaccine serotypes varied by country.
    CONCLUSIONS: Pneumococcal conjugate vaccines significantly reduced IPD and shifted serotype distribution in Latin America and the Caribbean. PCV10/PCV13 covered 57-84% of serotypes in children under 5, with marked decline in PCV serotypes post-vaccination. Continuous surveillance remains crucial for monitoring evolving serotypes and informing public health action.
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  • 文章类型: Journal Article
    社区获得性肺炎(CAP)是全球健康问题,25%的病例归因于肺炎链球菌(Spn)。病毒感染,如甲型流感病毒(IAV),呼吸道合胞病毒(RSV),和人类偏肺病毒(hMPV)增加了Spn的风险,导致严重的并发症,由于受损的宿主免疫力。
    我们评估了抗PhtD单克隆抗体(mAb)鸡尾酒疗法(PhtD37)在三种病毒/细菌合并感染模型中提高生存率的功效:IAV/Spn,hMPV/Spn,和RSV/Spn。
    PhtD3+7单克隆抗体鸡尾酒的表现优于抗病毒单克隆抗体,从而延长生存期。在IAV/Spn模型中,它将血液和肺中的细菌滴度降低了2-4个日志。在hMPV/Spn模型中,PhtD3+7提供比hMPV中和mAbMPV467更大的保护,显著降低细菌滴度。在RSV/Spn模型中,PhtD3+7提供比抗病毒mAbD25略好的保护,独特地降低血液和肺中的细菌滴度。
    鉴于抗生素耐药性的威胁,我们的研究结果强调了抗PhtDmAb治疗作为治疗病毒性和继发性肺炎球菌合并感染的有效选择的潜力.
    UNASSIGNED: Community-acquired pneumonia (CAP) is a global health concern, with 25% of cases attributed to Streptococcus pneumoniae (Spn). Viral infections like influenza A virus (IAV), respiratory syncytial virus (RSV), and human metapneumovirus (hMPV) increase the risk of Spn, leading to severe complications due to compromised host immunity.
    UNASSIGNED: We evaluated the efficacy of an anti-PhtD monoclonal antibody (mAb) cocktail therapy (PhtD3 + 7) in improving survival rates in three viral/bacterial coinfection models: IAV/Spn, hMPV/Spn, and RSV/Spn.
    UNASSIGNED: The PhtD3 + 7 mAb cocktail outperformed antiviral mAbs, resulting in prolonged survival. In the IAV/Spn model, it reduced bacterial titers in blood and lungs by 2-4 logs. In the hMPV/Spn model, PhtD3 + 7 provided greater protection than the hMPV-neutralizing mAb MPV467, significantly reducing bacterial titers. In the RSV/Spn model, PhtD3 + 7 offered slightly better protection than the antiviral mAb D25, uniquely decreasing bacterial titers in blood and lungs.
    UNASSIGNED: Given the threat of antibiotic resistance, our findings highlight the potential of anti-PhtD mAb therapy as an effective option for treating viral and secondary pneumococcal coinfections.
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  • 文章类型: Journal Article
    背景:慢性肺病是感染艾滋病毒的非洲儿童发病的主要原因;然而,HIV相关慢性肺病(HCLD)的微生物决定因素仍然知之甚少.我们进行了一项病例对照研究,以调查在抗逆转录病毒治疗(ART)上建立的肺炎球菌结合疫苗(PCV)初治儿童(HCLD)和无HCLD(HCLD-)的呼吸道微生物的患病率和密度。
    方法:从HCLD收集的鼻咽拭子(定义为支气管扩张后无可逆性的用力呼气量/秒<-1.0)和年龄-,Site-,在津巴布韦和马拉维(BREATHE试验-NCT02426112)招募的年龄在6-19岁之间的参与者进行了94种肺炎球菌血清型和12种细菌的检测,包括肺炎链球菌(SP),金黄色葡萄球菌(SA),流感嗜血杆菌(HI),卡他莫拉氏菌(MC),和八种病毒,包括人鼻病毒(HRV),呼吸道合胞病毒A或B,和人类偏肺病毒,使用纳米流体qPCR(以前称为Fluidigm的标准BioTools)。Fisher精确检验和logistic回归分析用于组间比较和与常见呼吸道微生物相关的危险因素。分别。
    结果:共有345名参与者(287HCLD+,58HCLD-;中位年龄,15.5年[IQR=12.8-18],女性,52%)包括在最终分析中。SP的患病率(40%[116/287]与21%[12/58],p=0.005)和HRV(7%[21/287]与0%[0/58],p=0.032)与HCLD-参与者相比,HCLD+参与者更高。在SP呈阳性的参与者中(116HCLD+和12HCLD-),66%[85/128]检测到非PCV-13血清型。总的来说,PCV-13血清型(4,19A,19F:各16%[7/43])和NVT13和21(各9%[8/85])占主导地位。HI的密度(2×104基因组当量[GE/ml]与3×102GE/ml,p=0.006)和MC(1×104GE/mlvs.1×103GE/ml,p=0.031)在HCLD+中高于HCLD-。HCLD+组的细菌共检测(≥2种细菌)较高(36%[114/287]vs.(19%[11/58]),(p=0.014),SP和HI共检测(HCLD+:30%[86/287]与HCLD-:12%[7/58],p=0.005)占优势。仅在HCLD+参与者中检测到病毒(主要是HRV)。最后,既往有结核病治疗史的参与者更有可能携带SP(校正比值比(AOR):1.9[1.1-3.2],p=0.021)或HI(AOR:2.0[1.2-3.3],p=0.011),而那些使用ART≥2年的人不太可能携带HI(aOR:0.3[0.1-0.8],p=0.005)和MC(aOR:0.4[0.1-0.9],p=0.039)。
    结论:HCLD+患儿更容易被SP和HRV定植,鼻咽部HI和MC细菌负荷较高。SP的作用,HI,和HRV在CLD发病机制中,包括它们如何影响急性加重的风险,应该进一步研究。
    背景:BREATHE试验(ClinicalTrials.gov标识符:NCT02426112,注册日期:2015年4月24日)。
    BACKGROUND: Chronic lung disease is a major cause of morbidity in African children with HIV infection; however, the microbial determinants of HIV-associated chronic lung disease (HCLD) remain poorly understood. We conducted a case-control study to investigate the prevalence and densities of respiratory microbes among pneumococcal conjugate vaccine (PCV)-naive children with (HCLD +) and without HCLD (HCLD-) established on antiretroviral treatment (ART).
    METHODS: Nasopharyngeal swabs collected from HCLD + (defined as forced-expiratory-volume/second < -1.0 without reversibility postbronchodilation) and age-, site-, and duration-of-ART-matched HCLD- participants aged between 6-19 years enrolled in Zimbabwe and Malawi (BREATHE trial-NCT02426112) were tested for 94 pneumococcal serotypes together with twelve bacteria, including Streptococcus pneumoniae (SP), Staphylococcus aureus (SA), Haemophilus influenzae (HI), Moraxella catarrhalis (MC), and eight viruses, including human rhinovirus (HRV), respiratory syncytial virus A or B, and human metapneumovirus, using nanofluidic qPCR (Standard BioTools formerly known as Fluidigm). Fisher\'s exact test and logistic regression analysis were used for between-group comparisons and risk factors associated with common respiratory microbes, respectively.
    RESULTS: A total of 345 participants (287 HCLD + , 58 HCLD-; median age, 15.5 years [IQR = 12.8-18], females, 52%) were included in the final analysis. The prevalence of SP (40%[116/287] vs. 21%[12/58], p = 0.005) and HRV (7%[21/287] vs. 0%[0/58], p = 0.032) were higher in HCLD + participants compared to HCLD- participants. Of the participants positive for SP (116 HCLD + & 12 HCLD-), 66% [85/128] had non-PCV-13 serotypes detected. Overall, PCV-13 serotypes (4, 19A, 19F: 16% [7/43] each) and NVT 13 and 21 (9% [8/85] each) predominated. The densities of HI (2 × 104 genomic equivalents [GE/ml] vs. 3 × 102 GE/ml, p = 0.006) and MC (1 × 104 GE/ml vs. 1 × 103 GE/ml, p = 0.031) were higher in HCLD + compared to HCLD-. Bacterial codetection (≥ any 2 bacteria) was higher in the HCLD + group (36% [114/287] vs. (19% [11/58]), (p = 0.014), with SP and HI codetection (HCLD + : 30% [86/287] vs. HCLD-: 12% [7/58], p = 0.005) predominating. Viruses (predominantly HRV) were detected only in HCLD + participants. Lastly, participants with a history of previous tuberculosis treatment were more likely to carry SP (adjusted odds ratio (aOR): 1.9 [1.1 -3.2], p = 0.021) or HI (aOR: 2.0 [1.2 - 3.3], p = 0.011), while those who used ART for ≥ 2 years were less likely to carry HI (aOR: 0.3 [0.1 - 0.8], p = 0.005) and MC (aOR: 0.4 [0.1 - 0.9], p = 0.039).
    CONCLUSIONS: Children with HCLD + were more likely to be colonized by SP and HRV and had higher HI and MC bacterial loads in their nasopharynx. The role of SP, HI, and HRV in the pathogenesis of CLD, including how they influence the risk of acute exacerbations, should be studied further.
    BACKGROUND: The BREATHE trial (ClinicalTrials.gov Identifier: NCT02426112 , registered date: 24 April 2015).
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  • 文章类型: Journal Article
    肺炎链球菌的主要致病因素是胆固醇依赖性细胞溶素,结合膜胆固醇并产生永久性溶解或瞬时孔。在脑部感染期间,血管损伤与可变缺血发生。缺血对肺炎球菌溶素成孔能力的作用尚不清楚。在急性脑切片培养和原代培养的神经胶质细胞中,我们研究了急性毒素裂解(通过碘化丙啶染色和LDH释放)和瞬时孔形成(通过分析细胞内钙的增加)。我们分析了正常的外周组织葡萄糖状况(80mg%),正常脑葡萄糖水平(20mg%),和大脑低血糖条件(3毫克%),与常氧(8%氧气)或缺氧(2%氧气)的组合。在80毫克%的葡萄糖,缺氧通过肺炎球菌溶血素增强细胞溶解。在20毫克%的葡萄糖,缺氧不影响细胞裂解,但非溶解性孔形成后钙的恢复受损。只有3毫克%的葡萄糖,在常氧症期间,肺炎球菌溶血素是否产生更强的裂解。在低血糖(3mg%葡萄糖)条件下,肺炎球菌溶血素引起较温和的钙增加,但是修复工作不见了。小胶质细胞比星形胶质细胞结合更多的肺炎球菌溶血素,并且通常显示出更强的钙升高。因此,我们的工作表明,当氧气减少时,细胞中的毒素成孔能力不断降低,一旦氧气和葡萄糖减少,细胞维持钙内流稳态的能力不断降低。
    A major Streptococcus pneumoniae pathogenic factor is the cholesterol-dependent cytolysin pneumolysin, binding membrane cholesterol and producing permanent lytic or transient pores. During brain infections, vascular damage with variable ischemia occurs. The role of ischemia on pneumolysin\'s pore-forming capacity remains unknown. In acute brain slice cultures and primary cultured glia, we studied acute toxin lysis (via propidium iodide staining and LDH release) and transient pore formation (by analyzing increases in the intracellular calcium). We analyzed normal peripheral tissue glucose conditions (80 mg%), normal brain glucose levels (20 mg%), and brain hypoglycemic conditions (3 mg%), in combinations either with normoxia (8% oxygen) or hypoxia (2% oxygen). At 80 mg% glucose, hypoxia enhanced cytolysis via pneumolysin. At 20 mg% glucose, hypoxia did not affect cell lysis, but impaired calcium restoration after non-lytic pore formation. Only at 3 mg% glucose, during normoxia, did pneumolysin produce stronger lysis. In hypoglycemic (3 mg% glucose) conditions, pneumolysin caused a milder calcium increase, but restoration was missing. Microglia bound more pneumolysin than astrocytes and demonstrated generally stronger calcium elevation. Thus, our work demonstrated that the toxin pore-forming capacity in cells continuously diminishes when oxygen is reduced, overlapping with a continuously reduced ability of cells to maintain homeostasis of the calcium influx once oxygen and glucose are reduced.
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  • 文章类型: Journal Article
    胸膜脓胸是小儿肺炎的严重并发症。细菌培养阴性通常会阻碍最佳抗生素治疗。为了提高细菌鉴定,我们开发了一种分子检测方法,并与细菌培养进行了比较。我们的多重定量PCR检测肺炎链球菌,化脓性链球菌,使用细菌基因组DNA和实验室制备的样品(n=267)评估了金黄色葡萄球菌和流感嗜血杆菌。为了评估临床表现,我们进行了胸部脓胸分子评估(MATE)观察性研究,登记患有脓胸住院的儿童。通过细菌培养和多重qPCR检测胸膜液,和使用研究黄金标准确定的性能。我们确定了临床敏感性和时间到生物体的鉴定,以评估多重qPCR减少经验性非靶向抗生素治疗持续时间的潜力。使用加标样品,多重qPCR对所有生物体均表现出213/215(99.1%)的敏感性和52/52(100%)的特异性.在2019年5月至2023年3月期间,有100名儿童参加了MATE研究;平均年龄为3.9岁(IQR2-5.6)。通过多重qPCR在90/100(90%)标本中鉴定出细菌病原体,细菌培养24/100(24%)(P<0.001)。多重qPCR在68/76(90%)培养阴性标本中鉴定出细菌原因。肺炎链球菌是最常见的病原体,在67/100(67%)标本中鉴定。我们估计我们的多重qPCR将减少61%病例中非靶向抗生素治疗的持续时间,中位数为20天(IQR17.5-23,范围1-55)。与培养物相比,多重qPCR显着增加了病原体检测,并且可以减少非靶向抗生素治疗的持续时间。
    Pleural empyema is a serious complication of pneumonia in children. Negative bacterial cultures commonly impede optimal antibiotic therapy. To improve bacterial identification, we developed a molecular assay and evaluated its performance compared with bacterial culture. Our multiplex-quantitative PCR to detect Streptococcus pneumoniae, Streptococcus pyogenes, Staphylococcus aureus and Haemophilus influenzae was assessed using bacterial genomic DNA and laboratory-prepared samples (n = 267). To evaluate clinical performance, we conducted the Molecular Assessment of Thoracic Empyema (MATE) observational study, enrolling children hospitalised with empyema. Pleural fluids were tested by bacterial culture and multiplex-qPCR, and performance determined using a study gold standard. We determined clinical sensitivity and time-to-organism-identification to assess the potential of the multiplex-qPCR to reduce the duration of empiric untargeted antibiotic therapy. Using spiked samples, the multiplex-qPCR demonstrated 213/215 (99.1%) sensitivity and 52/52 (100%) specificity for all organisms. During May 2019-March 2023, 100 children were enrolled in the MATE study; median age was 3.9 years (IQR 2-5.6). A bacterial pathogen was identified in 90/100 (90%) specimens by multiplex-qPCR, and 24/100 (24%) by bacterial culture (P <0.001). Multiplex-qPCR identified a bacterial cause in 68/76 (90%) culture-negative specimens. S. pneumoniae was the most common pathogen, identified in 67/100 (67%) specimens. We estimate our multiplex-qPCR would have reduced the duration of untargeted antibiotic therapy in 61% of cases by a median 20 days (IQR 17.5-23, range 1-55). Multiplex-qPCR significantly increased pathogen detection compared with culture and may allow for reducing the duration of untargeted antibiotic therapy.
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  • 文章类型: Journal Article
    目的:使用许多毒性较低的血清型菌株,尚未可靠地产生由肺炎链球菌(Spn)引起的致命肺炎的动物模型。材料和方法:通过气管内雾化(ITA)途径在免疫活性小鼠中建立毒性较低的Spn血清型1菌株的肺部感染。生存,局部和全身细菌传播,将该模型的病理变化和炎症反应与通过气管内滴注攻击的小鼠进行比较,鼻内滴注和腹膜内注射途径。结果:ITA和气管内滴注均可引起致命性肺炎;然而,ITA导致更好的肺部细菌沉积和分布,病理同质性和递送效率。结论:ITA是建立重症肺部感染动物模型的最佳途径。
    这篇文章是关于什么的?肺炎链球菌(Spn),一种细菌,可能会导致其他健康人群的严重疾病和死亡。我们研究肺炎的一种方法是使用动物。然而,在实验室中感染Spn的动物的肺炎并不能很好地模仿人类的肺炎。为了研究这种疾病,我们需要一种新的方法来建立一个合适的动物模型。结果如何?这项研究建立了一种称为气管内雾化(ITA)的方法。在ITA,细菌可以形成称为气溶胶的小液滴,并到达小鼠肺的最深处。ITA可以在感染Spn的小鼠中引起致命的疾病,即使老鼠是健康的。这项研究的结果意味着什么?ITA方法可能是建立细菌毒性较低的严重肺炎动物模型的有用工具。
    Aim: Animal models of fatal pneumonia caused by Streptococcus pneumoniae (Spn) have not been reliably generated using many strains of less virulent serotypes. Materials & methods: Pulmonary infection of a less virulent Spn serotype1 strain in the immunocompetent mice was established via the intratracheal aerosolization (ITA) route. The survival, local and systemic bacterial spread, pathological changes and inflammatory responses of this model were compared with those of mice challenged via the intratracheal instillation, intranasal instillation and intraperitoneal injection routes. Results: ITA and intratracheal instillation both induced fatal pneumonia; however, ITA resulted in better lung bacterial deposition and distribution, pathological homogeneity and delivery efficiency. Conclusion: ITA is an optimal route for developing animal models of severe pulmonary infections.
    What is this article about? Streptococcus pneumoniae (Spn), a type of bacteria, can cause serious illness and death in otherwise healthy people. One way that we study pneumonia is using animals. However, pneumonia in animals infected with Spn in the laboratory does not mimic that in humans very well. To study this illness, we need a new way to set up a proper animal model.What were the results? This study set up a method called intratracheal aerosolization (ITA). In ITA, bacteria can form small droplets called aerosols and reach the deepest parts of a mouse’s lung. ITA can cause deadly illness in mice infected with Spn, even if the mice are healthy.What do the results of the study mean? The ITA method could be a useful tool to set up animal models of serious pneumonia with less virulent bacteria.
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  • 文章类型: Journal Article
    预防医学的价值优于疫苗接种的治疗。然而,对于未包括在疫苗中的菌株,已经开始形成沉重的压力,这些菌株导致病原体亚型的流行病学变化,从而导致“疫苗诱导的菌株替代”。在其他机制中,已经描述了非疫苗株的适应性增加和亚型的代谢变化。典型的例子包括肺炎球菌感染和病毒性疾病,如人乳头瘤病毒。最近,它在SARS-CoV-2中被描述,导致新亚型的出现,如Omicron和Delta变体。这种现象在结核分枝杆菌中也有报道,脑膜炎奈瑟菌和轮状病毒。这项研究解决了这些概念,这种现象的例子和含义。
    [方框:见正文]。
    The value of preventive medicine is superior to treatment with vaccinations occupying high priority. Nevertheless, heavy pressure has started to form in regard to strains not included in vaccines contributing to the changing epidemiology of pathogen subtypes leading to \'vaccine-induced strain replacement\'. Among other mechanisms, increasing fitness of nonvaccine strains and metabolic shifts in the subtypes have been described. Classical examples include pneumococcal infections and viral diseases, such as the human papilloma virus. Recently, it has been described in SARS-CoV-2, leading to the emergence of new subtypes, such as Omicron and Delta variants. The phenomenon has also been reported in Mycobacterium tuberculosis, Neisseria meningitidis and rotavirus. This study addresses the concepts, examples and implications of this phenomenon.
    [Box: see text].
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  • 文章类型: Journal Article
    了解病原体如何在地理空间中传播是疫苗接种等控制措施的基础。肺炎链球菌(肺炎球菌)是一种呼吸道细菌,占全球传染病发病率和死亡率的很大一部分。即使在疫苗接种后的时代,侵袭性肺炎球菌病(IPD)的发病率在大多数国家保持稳定,包括以色列。为了了解肺炎球菌在以色列的地理分布,我们分析了来自多个区域的IPD患者的1174个肺炎球菌基因组.我们将使用全基因组数据推断的分离株对之间的进化距离纳入相对风险(RR)比率框架,以捕获肺炎链球菌的地理结构。虽然我们在整个血统层面上找不到地理结构,全基因组序列数据提供的额外粒度表明,侵袭性肺炎球菌分离株在全国范围内完全混合大约需要5年.本文包含Microreact托管的数据。
    Understanding how pathogens spread across geographical space is fundamental for control measures such as vaccination. Streptococcus pneumoniae (the pneumococcus) is a respiratory bacterium responsible for a large proportion of infectious disease morbidity and mortality globally. Even in the post-vaccination era, the rates of invasive pneumococcal disease (IPD) remain stable in most countries, including Israel. To understand the geographical spread of the pneumococcus in Israel, we analysed 1174 pneumococcal genomes from patients with IPD across multiple regions. We included the evolutionary distance between pairs of isolates inferred using whole-genome data within a relative risk (RR) ratio framework to capture the geographical structure of S. pneumoniae. While we could not find geographical structure at the overall lineage level, the extra granularity provided by whole-genome sequence data showed that it takes approximately 5 years for invasive pneumococcal isolates to become fully mixed across the country.This article contains data hosted by Microreact.
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  • 文章类型: Journal Article
    2013年10月,布基纳法索在常规儿童免疫计划中引入了13价肺炎球菌结合疫苗(PCV13),使用3次主要剂量,无需加强。先前的肺炎球菌携带研究显示,5岁以下儿童的疫苗型(VT)携带减少,但年龄较大的儿童没有。
    我们进行了横截面,2020年3月在Bobo-Dioulasso对年龄≥1个月的健康人进行的年龄分层肺炎球菌携带研究。从鼻咽拭子(所有参与者)和口咽拭子(年龄≥5岁的参与者)中通过培养分离的肺炎球菌通过聚合酶链反应进行血清分型;Quellung对一个子集进行血清分型。使用来自2017年3月相同设计的研究数据,我们检查了按年龄组划分的肺炎球菌携带变化。
    在1005(2017年)和1002(2020年)注册参与者中,室性心动过速携带下降(21.6%至15.9%;调整后的患病率[aPR],0.76[95%置信区间{CI},.63-.92])。按年龄组,室性心动过速下降在5-14岁儿童中显著(28.9%至16.3%;aPR,0.57[95%CI,.39-.84]),但在5岁以下的儿童中没有(22.4%至19.1%;aPR,0.87[95%CI,.70-1.09])或≥15岁的成年人(12.0%至5.5%;aPR,0.52[95%CI,.26-1.05])。
    在PCV13推出后的3到6年之间,在年龄较大的儿童中观察到VT携带显着下降,可能反映了PCV13使用的间接影响。<5岁儿童的VT携带保持稳定,几乎每5人中就有1人携带VT肺炎球菌,建议在没有加强剂量的情况下限制PCV时间表。
    UNASSIGNED: In October 2013, Burkina Faso introduced 13-valent pneumococcal conjugate vaccine (PCV13) into the routine childhood immunization program using 3 primary doses with no booster. Previous pneumococcal carriage studies showed reductions in vaccine-type (VT) carriage in children aged <5 years but not in older age groups.
    UNASSIGNED: We conducted a cross-sectional, age-stratified pneumococcal carriage study among healthy persons aged ≥1 month in Bobo-Dioulasso in March 2020. Pneumococci isolated by culture from nasopharyngeal swabs (all participants) and oropharyngeal swabs (participants aged ≥5 years) were serotyped by polymerase chain reaction; a subset was serotyped by Quellung. Using data from a study with the same design from March 2017, we examined changes in pneumococcal carriage by age group.
    UNASSIGNED: Among 1005 (2017) and 1002 (2020) enrolled participants, VT carriage decreased (21.6% to 15.9%; adjusted prevalence ratio [aPR], 0.76 [95% confidence interval {CI}, .63-.92]). By age group, decline in VT carriage was significant among children aged 5-14 years (28.9% to 16.3%; aPR, 0.57 [95% CI, .39-.84]) but not among children aged <5 years (22.4% to 19.1%; aPR, 0.87 [95% CI, .70-1.09]) or adults aged ≥15 years (12.0% to 5.5%; aPR, 0.52 [95% CI, .26-1.05]).
    UNASSIGNED: Between 3 and 6 years after PCV13 introduction, significant declines in VT carriage were observed in older children, possibly reflecting indirect effects of PCV13 use. VT carriage in children aged <5 years remained stable with almost 1 in 5 carrying VT pneumococci, suggesting limitations to a PCV schedule without a booster dose.
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