SARS-Cov-2, severe acute respiratory syndrome coronavirus 2

SARS - CoV - 2 , 严重急性呼吸系统综合症冠状病毒 2
  • 文章类型: Journal Article
    COVID-19大流行暴露并加剧了围产期人群持续的健康不平等,导致母婴并发症的差异。在这篇叙述性评论中,我们提出了COVID-19大流行背景下围产期健康社会决定因素的适应概念框架,并利用该框架将有关COVID-19疫苗接种和感染差异的文献背景化.我们综合了结构环境的要素,个人社会经济地位,具体的中介决定因素相互影响,围产期COVID-19疫苗接种和感染,认为每个级别的系统不平等导致围产期健康结局的差异。从那里,我们发现文献中的空白,提出观察到的差异的机制,最后讨论了缓解这些问题的策略。
    The COVID-19 pandemic exposed and exacerbated persistent health inequities in perinatal populations, resulting in disparities of maternal and fetal complications. In this narrative review, we present an adapted conceptual framework of perinatal social determinants of health in the setting of the COVID-19 pandemic and use this framework to contextualize the literature regarding disparities in COVID-19 vaccination and infection. We synthesize how elements of the structural context, individual socioeconomic position, and concrete intermediary determinants influence each other and perinatal COVID-19 vaccination and infection, arguing that systemic inequities at each level contribute to observed disparities in perinatal health outcomes. From there, we identify gaps in the literature, propose mechanisms for observed disparities, and conclude with a discussion of strategies to mitigate them.
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  • 文章类型: Journal Article
    COVID-19大流行极大地破坏了全球现代人类文明的节奏,但全球范围的封锁从根本上恢复了整个环境的健康。喜马拉雅跨界河流提供了巨大的临时,全年为数百万人提供监管和文化生态系统服务,但近年来,由于多种原因,水质正在恶化。在过去的十年里,由于水的共享和河流的环境流动,印度与孟加拉国的政治关系略有破裂。COVID-19的封锁为执行对比研究提供了很大的空间,锁定和解锁阶段。本研究试图通过WAWQI和钠吸收比等灌溉水质指标调查跨界河流的时空水质,可溶性钠百分比,潜在盐度,考虑18个水质参数(pH,EC,TDS,TSS,Ca²,Mg²,Na²,K,F-,Cl-,NO3-,SO²-,PO43-,DO,T,TUR,COD和BOD)。结果表明,在三个阶段,EC和TDS之间存在强正相关。BOD大幅减少,与预封锁相比,在封锁期间发现了近70%的COD和TUR站,而在40%的站中记录了DO的增加。大多数站点的WQI显示,在封锁期间,水质改善了约80%。此外,在Mathabhanga-Churni河中发现了最糟糕的WQI,其次是Mahananda。在封锁期间,惊人的结果表明,由于农业径流,大多数站点的SAR和MH显着放大。
    The COVID-19 pandemic significantly destructs the rhythm of global modern human civilization but worldwide lockdown radically recovers the health of the total environment. The Himalayan trans-boundary rivers provide huge provisional, regulatory and cultural ecosystem services to millions of people throughout the year but in the recent years the water quality is being deteriorated due to multiple reasons. In the last decade, India-Bangladesh political relationship has been slightly broken down due to water sharing and environmental flow of rivers.The COVID-19 lockdown offered a great scope to execute the comparative study among pre, lockdown and unlock phase. The research attempts to investigate the spatiotemporal water quality of trans-boundary rivers through WAWQI and irrigation water quality indices such as Sodium absorption ratio, Soluble sodium percentage, Potential salinity, Magnesium hazard and Kelly\'s index considering eighteen water quality parameters (pH, EC, TDS, TSS, Ca²⁺, Mg²⁺, Na²⁺, K⁺, F-, Cl-, NO3-, SO₄²-, PO43-, DO, T, TUR, COD and BOD). The result shows the strong positive correlation between EC and TDS during three phases. Significant reduction of BOD, COD and TUR has been noticed almost 70% stations during lockdown compared with prelockdown while augmentation of DO has been recorded around 40% stations. WQI of most of the stations shows around 80% improvement of water quality during lockdown period. Moreover, worst kind of WQI was found in the Mathabhanga-Churni river followed by Mahananda. During lockdown, the striking results show that SAR and MH were significantly amplified in most of the stations due to agricultural run-off.
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  • 文章类型: Journal Article
    无症状受试者占SARS-CoV-2感染的25%至45%,特别是,接受轻度免疫抑制治疗的受试者的症状可能被掩盖,并可能长时间传播病毒。确定有症状和无症状的SARS-CoV-2感染的累积发生率和相关危险因素,我们对来自意大利中部的278例肝移植受者(LTR)进行了前瞻性临床和血清学调查.在2020年4月至2021年4月期间,每4个月在259个LTR中进行三种不同的血清学测试:一种基于整个SARS-CoV-2病毒的原始提取物,两种基于特异性病毒抗原(核蛋白和受体结合域),以检测特异性IgG。IgM和IgA。报告症状或与SARS-CoV-2阳性受试者密切接触的150名LTR,或通过标准筛选程序(鼻咽拭子的RT-PCR)进行了分子检测,血清学结果呈阳性。发现31例过去或活动性SARS-CoV-2感染:14例分子检测呈阳性(64%有症状),17例仅血清学阳性(18%有症状)。SARS-CoV-2感染与性别无统计学相关,年龄,肥胖,糖尿病,肾功能损害,抗排斥治疗的类型或移植时间。无症状的SARS-CoV-2病例(61.3%)在男性和肾小球滤过率>50ml/min的人群中更为常见。总的来说,在标准诊断分子方案中增加重复血清学,SARS-CoV-2感染的检出率从5.1%提高到10.9%.我们的LTR中的抗SARS-CoV-2血清阳性率(11.2%)与意大利中部的普通人群相当,被认为是中等影响区域。在血清学诊断时,仅发现一名无症状受试者(6%)在呼吸道中携带SARS-CoV-2。
    Asymptomatic subjects account for 25 to 45% of SARS-CoV-2 infections, and in particular, subjects on mild immunosuppressive therapy may have symptoms masked and could spread virus for an extended period of time. To determine the cumulative incidence of symptomatic and asymptomatic SARS-CoV-2 infections and associated risk factors, we conducted a prospective clinical and serological survey in a cohort of 278 liver transplant recipients (LTRs) from Central Italy. Three different serology tests were performed every 4 months in 259 LTRs between April 2020 and April 2021: one based on raw extract of whole SARS-CoV-2 virus and two on specific viral antigens (nucleoprotein and receptor binding domain) to detect specific IgG, IgM and IgA. Hundred fifteen LTRs who reported symptoms or close contact with a SARS-CoV-2-positive subject, or had a positive serological result underwent molecular testing by standard screening procedures (RT-PCR on naso-pharyngeal swab). Thirty-one past or active SARS-CoV-2 infections were identified: 14 had positive molecular test (64% symptomatic), and 17 had positive serology only (18% symptomatic). SARS-CoV-2 infection was not statistically related to gender, age, obesity, diabetes, renal impairment, type of anti-rejection therapy or time from transplant. Asymptomatic SARS-CoV-2 cases (61.3%) were more frequent in males and in those with glomerular filtrate rate >50 ml/min. Overall, the addition of repeated serology to standard diagnostic molecular protocols increased detection of SARS-CoV-2 infection from 5.1% to 10.9%. Anti-SARS-CoV-2 seroprevalence among our LTRs (11.2%) is comparable to the general population of Central Italy, considered a medium-impact area. Only one asymptomatic subject (6%) was found to carry SARS-CoV-2 in respiratory tract at the time of serological diagnosis.
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  • 文章类型: Case Reports
    2019年冠状病毒病(COVID-19)疫苗是对抗冠状病毒2(SARS-CoV-2)带来的严重急性呼吸道综合症的主要武器。该疫苗可显着降低SARS-CoV-2感染的风险和严重程度。系统性红斑狼疮(SLE)患者需要预防疫苗可预防的疾病,包括COVID-19。SLE患者由于免疫抑制疗法和多种免疫缺陷而具有较高的严重感染率-这两者都能够在疫苗接种后使免疫反应减弱。在COVID-19的管理中,已经制定了建议,以指导免疫抑制疗法的调整和/或继续进行,以在接种基于mRNA或病毒载体递送的疫苗后产生有效的免疫反应。自2021年12月以来,单克隆抗体也已可用。在这里,我们介绍了三例SLE患者在接种疫苗后感染COVID-19。一个在门诊环境中进行管理,两个需要住院。
    The 2019 Coronavirus disease (COVID-19) vaccine is a major weapon in the fight against the severe acute respiratory syndrome brought about by coronavirus 2 (SARS-CoV-2). The vaccine significantly reduces the risk and severity of infection by SARS-CoV-2. Patients with systemic lupus erythematosus (SLE) need protection from vaccine-preventable diseases including COVID-19. SLE patients have higher rates of severe infections due to immunosuppressive therapies and multiple immunologic defects - both of which are capable of blunting the immune responses after vaccination. In the management of COVID-19, recommendations have been developed to guide adjustments and/or continuation of immunosuppressive therapies for an effective immune response following vaccination with mRNA-based or viral vector-delivered vaccines. Monoclonal antibodies have also become available since December 2021. Here we present three cases of SLE patients who contracted COVID-19 after vaccination. One was managed in ambulatory settings and two required inpatient hospital admission.
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  • 文章类型: Journal Article
    一氧化氮(NO)是一种重要的气体发射器,对许多细菌和病毒感染的先天免疫反应的发展具有重要意义。同时还调节血管生理学。从内源性一氧化氮合酶的上调产生NO是抑制宿主防御中病毒复制的有效方法,并需要对抗病毒疗法的开发进行研究。随着与几种呼吸道病毒感染有关的全球大流行的发病率增加,有必要开发广泛的治疗平台来抑制病毒复制并实现更有效的宿主清除,以及制造新材料来阻止医疗设备中的病毒传播。在产生稳定的NO供体化合物及其掺入大分子支架和聚合物基材中的最新进展为开发基于NO的治疗剂以在杀菌和接触血液的表面的应用中长期释放NO创造了新的范例。尽管有大量的研究,很少考虑释放NO的支架和基质来减少病毒感染的被动传播或治疗几种呼吸道病毒感染。这篇综述的目的是强调开发气态NO的最新进展,没有前药,和NO供体化合物用于抗病毒治疗;讨论NO作为抗病毒剂的局限性;并概述了指导材料设计下一代NO释放抗病毒平台的未来前景。
    Nitric oxide (NO) is a gasotransmitter of great significance to developing the innate immune response to many bacterial and viral infections, while also modulating vascular physiology. The generation of NO from the upregulation of endogenous nitric oxide synthases serves as an efficacious method for inhibiting viral replication in host defense and warrants investigation for the development of antiviral therapeutics. With increased incidence of global pandemics concerning several respiratory-based viral infections, it is necessary to develop broad therapeutic platforms for inhibiting viral replication and enabling more efficient host clearance, as well as to fabricate new materials for deterring viral transmission from medical devices. Recent developments in creating stabilized NO donor compounds and their incorporation into macromolecular scaffolds and polymeric substrates has created a new paradigm for developing NO-based therapeutics for long-term NO release in applications for bactericidal and blood-contacting surfaces. Despite this abundance of research, there has been little consideration of NO-releasing scaffolds and substrates for reducing passive transmission of viral infections or for treating several respiratory viral infections. The aim of this review is to highlight the recent advances in developing gaseous NO, NO prodrugs, and NO donor compounds for antiviral therapies; discuss the limitations of NO as an antiviral agent; and outline future prospects for guiding materials design of a next generation of NO-releasing antiviral platforms.
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  • 文章类型: Journal Article
    评估和比较COVID-19重症患者与非SARS-CoV-2病毒性肺炎的重症患者在CT扫描中发现的腹部受累的患病率和类型。
    单中心IRB批准的回顾性研究,比较了在ICU接受COVID-19的患者和在ICU非SARS-CoV-2病毒性肺炎患者的历史队列中进行的所有腹部CT扫描。对于每个病人来说,胆囊异常,急性胰腺炎体征,急性肾上腺梗死,肾梗死,评估肠壁增厚和肠缺血的CT扫描征象.然后比较重症COVID-19和非COVID-19患者的结果(分类数据的Chi-2或Fisher精确检验,连续数据的Studentt检验或曼-WhitneyU检验适当)。
    纳入99例COVID-19患者和45例非COVID-19患者。COVID-19患者和其他病毒性肺炎患者的异常发现率无差异(63/99[64%]vs27/45[61%],p=0.94)。急性胰腺炎体征更常见于COVID-19患者,但组间无统计学差异(14/99[14%]vs3/45[6.7%],p=0.31)。肠壁增厚在其他病毒性肺炎患者中更为常见(18/99[18%]vs11/45[24%],p=0.52),然而,在COVID-19组中观察到较高的缺血性特征,尽管没有达到统计学上的显着差异(7/99[7.1%]vs2/45[4.4%],p=0.75)。
    在因COVID-19住院的ICU患者中,CT显示的腹部受累的发生率和严重程度尽管很高,但与其他严重病毒性肺炎患者的发生率和严重程度没有差异。
    UNASSIGNED: To evaluate and compare the prevalence and type of abdominal involvements identified on CT scans in COVID-19 critically ill patients to those observed in critically ill patients with non-SARS-CoV-2 viral pneumonia.
    UNASSIGNED: Monocentric IRB approved retrospective study comparing all abdominal CT scans performed for patients admitted in the ICU with COVID-19 and those performed in a historical cohort of ICU patients with non-SARS-CoV-2 viral pneumonia. For each patient, gallbladder abnormality, acute pancreatitis signs, acute adrenal infarction, renal infarcts, bowel wall thickening and CT scan signs of bowel ischemia were assessed. Results were then compared between critically ill COVID-19 and non-COVID-19 patients (Chi-2 or Fisher exact tests for categorical data and Student t-test or Mann-Whitney U test for continuous data as appropriate).
    UNASSIGNED: Ninety-nine COVID-19 patients and 45 non-COVID-19 patients were included.No difference was found between the rate of abnormal findings comparing COVID-19 patients and patients with other viral pneumonia (63/99 [64%] vs 27/45 [61%], p=0.94). Acute pancreatitis signs were more commonly seen in COVID-19 patients but without statistically difference between groups (14/99 [14%] vs 3/45 [6.7%], p=0.31). Bowel wall thickening was slightly more commonly seen in patients with other viral pneumonia (18/99 [18%] vs 11/45 [24%], p=0.52), however ischemic features were observed in higher rate in the COVID-19 group, although without reaching statistically significant differences (7/99 [7.1%] vs 2/45 [4.4%], p=0.75).
    UNASSIGNED: The rate and severity of abdominal involvement demonstrated by CT in ICU patients hospitalized for COVID-19 although high were not different to that observed in patients with other severe viral pneumoniae.
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  • 文章类型: Journal Article
    SARS-CoV-2Omicron变体含有15个突变,包括独特的Q493R,在刺突蛋白受体结合域(S1-RBD)中具有高度传染性。虽然与以前报道的突变进行比较提供了一些见解,在BA.4,BA.5,BA.2.75,BQ.1和XBB谱系中观察到的感染增加的潜在机制和独特Q493R突变逆转的影响尚未完全了解.这里,使用结构建模和分子动力学(MD)模拟,我们显示Omicron突变增加了S1-RBD对ACE2的亲和力,而独特的Q493R突变的逆转进一步增加了ACE2-S1-RBD的亲和力.具体来说,我们执行了所有的原子,使用OmicronS1-RBD-ACE2的模型结构进行显式溶剂MD模拟,并将轨迹与WT复合物进行比较,发现OmicronS1-RBD中的Cα原子波动大幅减少,氢键和其他相互作用增加。残基水平分析揭示了几个残基之间相互作用的改变,包括WT复合物中的S1-RBDY449的ACE2D38与Omicron复合物中突变的R残基(Q493R)相互作用的转换。重要的是,用Revertant(无Q493R突变的Omicron)复合物模拟显示S1-RBD和ACE2之间的相互作用进一步增强。因此,本文的结果不仅为Omicron变异体的感染潜力增加提供了见解,而且为逆转某些Omicron谱系中的Q493R突变提供了机制基础,并将有助于理解突变对SARS-CoV-2进化的影响。
    The SARS-CoV-2 Omicron variant containing 15 mutations, including the unique Q493R, in the spike protein receptor binding domain (S1-RBD) is highly infectious. While comparison with previously reported mutations provide some insights, the mechanism underlying the increased infections and the impact of the reversal of the unique Q493R mutation seen in BA.4, BA.5, BA.2.75, BQ.1 and XBB lineages is not yet completely understood. Here, using structural modelling and molecular dynamics (MD) simulations, we show that the Omicron mutations increases the affinity of S1-RBD for ACE2, and a reversal of the unique Q493R mutation further increases the ACE2-S1-RBD affinity. Specifically, we performed all atom, explicit solvent MD simulations using a modelled structure of the Omicron S1-RBD-ACE2 and compared the trajectories with the WT complex revealing a substantial reduction in the Cα-atom fluctuation in the Omicron S1-RBD and increased hydrogen bond and other interactions. Residue level analysis revealed an alteration in the interaction between several residues including a switch in the interaction of ACE2 D38 from S1-RBD Y449 in the WT complex to the mutated R residue (Q493R) in Omicron complex. Importantly, simulations with Revertant (Omicron without the Q493R mutation) complex revealed further enhancement of the interaction between S1-RBD and ACE2. Thus, results presented here not only provide insights into the increased infectious potential of the Omicron variant but also a mechanistic basis for the reversal of the Q493R mutation seen in some Omicron lineages and will aid in understanding the impact of mutations in SARS-CoV-2 evolution.
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  • 文章类型: Journal Article
    急性肺损伤(ALI)是临床上严重的肺部疾病,发病率和死亡率都很高。尤其是,2019年冠状病毒病(COVID-19)对全球政府健康构成严重威胁。它几乎分布在宇宙的各个角落,COVID-19防控形势依然严峻。中医药在疾病的预防和治疗中起着至关重要的作用。目前,缺乏治疗这些疾病的药物,因此有必要开发治疗COVID-19相关ALI的药物。苦参(D.Don)Hara是of科的一年生植物,也是中国历史悠久的传统医学之一。近年来,其根茎(药用部位)因其显著的抗炎作用而受到国内外学者的关注,抗菌和抗癌活性。它可以在SARS-COV-2上使用多种成分,目标,和路径,并对冠状病毒病2019(COVID-19)相关急性肺损伤(ALI)有一定影响。然而,对其地上部分(包括茎和叶)的系统研究很少,其潜在的治疗机制尚未研究。使用TCMSP数据库收集了F.dibotrys根茎的植物化学成分。并通过代谢组学检测了F.dibotrys的地上部分的代谢产物。通过PharmMapper网站工具预测了F.dibotrys的植物化学目标。从GeneCards中检索到COVID-19和ALI相关基因。通过metscape生物信息学工具,通过基因本体论(GO)和KEGG富集了F.dibotrys中COVID-19和ALI相关基因的交叉靶标和活性植物化学物质。使用Cytoscape软件建立并分解了相互作用的网络进入活性植物化学物质和抗COVID-19和ALI靶标。DiscoveryStudio(2019版)用于对具有抗COVID-19和ALI靶标的关键活性植物化学物质进行分子对接。我们从F.dibotrys的地上部分鉴定出1136种化学物质,其中活性类黄酮和酚类化学物质47种。从F.dibotrys的根茎中搜索到了总共61种化学物质,其中15种是活性化学物质。因此,在F.dibotrys的地上部分和根茎上有6种常见的关键活性化学物质,89这些植物化学物质的潜在目标,和211个COVID-19和ALI相关基因。GO富集表明F.dibotrys可能参与影响包含许多生物学过程的基因靶标,例如,巨核细胞分化的负调控,调节DNA代谢过程,这可以归结为其抗COVID-19相关的ALI效应。KEGG通路表明病毒致癌作用,剪接体,沙门氏菌感染,冠状病毒病-COVID-19,军团菌病和人类免疫缺陷病毒1感染途径是困扰F.dibotrys抗COVID-19相关ALI作用的主要途径。分子对接证实了F.dibotrys的6种关键活性植物化学物质,如木犀草素,(+)-表儿茶素,槲皮素,异鼠李素,(+)-儿茶素,和(-)-儿茶素没食子酸酯,可以与内核治疗靶点NEDD8、SRPK1、DCUN1D1和PARP1结合。体外活性实验表明,在一定范围内,随着浓度的增加,二博特草生部分和根茎的总抗氧化能力增加。此外,作为一个整体,黄曲霉地上部分的抗氧化能力强于根茎。我们的研究为进一步探索F.dibotrys的抗COVID-19相关ALI化学成分和机制提供了线索,并为开发基于F.dibotrys植物化学物质的现代抗COVID-19相关ALI药物提供了科学依据。我们还充分开发了F.dibotrys的地上部分的药用价值,能有效避免资源的浪费。同时,我们的工作为整合代谢组学提供了新的策略,网络药理学,和分子对接技术是识别对中药药理作用有效的有效成分和机制的有效途径。
    Acute lung injury (ALI) is a clinically severe lung illness with high incidence rate and mortality. Especially, coronavirus disease 2019 (COVID-19) poses a serious threat to world wide governmental fitness. It has distributed to almost from corner to corner of the universe, and the situation in the prevention and control of COVID-19 remains grave. Traditional Chinese medicine plays a vital role in the precaution and therapy of sicknesses. At present, there is a lack of drugs for treating these diseases, so it is necessary to develop drugs for treating COVID-19 related ALI. Fagopyrum dibotrys (D. Don) Hara is an annual plant of the Polygonaceae family and one of the long-history used traditional medicine in China. In recent years, its rhizomes (medicinal parts) have attracted the attention of scholars at home and abroad due to their significant anti-inflammatory, antibacterial and anticancer activities. It can work on SARS-COV-2 with numerous components, targets, and pathways, and has a certain effect on coronavirus disease 2019 (COVID-19) related acute lung injury (ALI). However, there are few systematic studies on its aerial parts (including stems and leaves) and its potential therapeutic mechanism has not been studied. The phytochemical constituents of rhizome of F. dibotrys were collected using TCMSP database. And metabolites of F. dibotrys\' s aerial parts were detected by metabonomics. The phytochemical targets of F. dibotrys were predicted by the PharmMapper website tool. COVID-19 and ALI-related genes were retrieved from GeneCards. Cross targets and active phytochemicals of COVID-19 and ALI related genes in F. dibotrys were enriched by gene ontology (GO) and KEGG by metscape bioinformatics tools. The interplay network entre active phytochemicals and anti COVID-19 and ALI targets was established and broke down using Cytoscape software. Discovery Studio (version 2019) was used to perform molecular docking of crux active plant chemicals with anti COVID-19 and ALI targets. We identified 1136 chemicals from the aerial parts of F. dibotrys, among which 47 were active flavonoids and phenolic chemicals. A total of 61 chemicals were searched from the rhizome of F. dibotrys, and 15 of them were active chemicals. So there are 6 commonly key active chemicals at the aerial parts and the rhizome of F. dibotrys, 89 these phytochemicals\'s potential targets, and 211 COVID-19 and ALI related genes. GO enrichment bespoken that F. dibotrys might be involved in influencing gene targets contained numerous biological processes, for instance, negative regulation of megakaryocyte differentiation, regulation of DNA metabolic process, which could be put down to its anti COVID-19 associated ALI effects. KEGG pathway indicated that viral carcinogenesis, spliceosome, salmonella infection, coronavirus disease - COVID-19, legionellosis and human immunodeficiency virus 1 infection pathway are the primary pathways obsessed in the anti COVID-19 associated ALI effects of F. dibotrys. Molecular docking confirmed that the 6 critical active phytochemicals of F. dibotrys, such as luteolin, (+) -epicatechin, quercetin, isorhamnetin, (+) -catechin, and (-) -catechin gallate, can combine with kernel therapeutic targets NEDD8, SRPK1, DCUN1D1, and PARP1. In vitro activity experiments showed that the total antioxidant capacity of the aerial parts and rhizomes of F. dibotrys increased with the increase of concentration in a certain range. In addition, as a whole, the antioxidant capacity of the aerial part of F. dibotrys was stronger than that of the rhizome. Our research afford cues for farther exploration of the anti COVID-19 associated ALI chemical compositions and mechanisms of F. dibotrys and afford scientific foundation for progressing modern anti COVID-19 associated ALI drugs based on phytochemicals in F. dibotrys. We also fully developed the medicinal value of F. dibotrys\' s aerial parts, which can effectively avoid the waste of resources. Meanwhile, our work provides a new strategy for integrating metabonomics, network pharmacology, and molecular docking techniques which was an efficient way for recognizing effective constituents and mechanisms valid to the pharmacologic actions of traditional Chinese medicine.
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  • 文章类型: Journal Article
    当前,迅速多样化的大流行加速了对有效和有效地识别COVID-19潜在候选药物的需求。对SARS-CoV-2感染的宿主免疫应答的知识,然而,仍然有限,迄今为止批准的药物很少。可行的战略和工具正在迅速出现,以解决这一问题,特别是对现有药物的再利用提供了重大的希望。这里我们介绍一个系统生物学工具,表型标志,通过利用可用的转录组学和蛋白质组学数据库,可以对宿主细胞中的SARS-CoV-2感染进行建模,以i)以高灵敏度和特异性(均>96%)确定病毒对细胞宿主免疫反应的影响,产生特定的细胞SARS-CoV-2特征,并且ii)利用这些细胞特异性特征来鉴定有希望的可再利用的疗法。在这个工具的推动下,加上领域专业知识,我们确定了几种潜在的COVID-19药物,包括甲泼尼龙和二甲双胍,并进一步将影响SARS-CoV-2的关键细胞途径识别为COVID-19发病机制的潜在药物靶标。
    The current, rapidly diversifying pandemic has accelerated the need for efficient and effective identification of potential drug candidates for COVID-19. Knowledge on host-immune response to SARS-CoV-2 infection, however, remains limited with few drugs approved to date. Viable strategies and tools are rapidly arising to address this, especially with repurposing of existing drugs offering significant promise. Here we introduce a systems biology tool, the PHENotype SIMulator, which -by leveraging available transcriptomic and proteomic databases-allows modeling of SARS-CoV-2 infection in host cells in silico to i) determine with high sensitivity and specificity (both>96%) the viral effects on cellular host-immune response, resulting in specific cellular SARS-CoV-2 signatures and ii) utilize these cell-specific signatures to identify promising repurposable therapeutics. Powered by this tool, coupled with domain expertise, we identify several potential COVID-19 drugs including methylprednisolone and metformin, and further discern key cellular SARS-CoV-2-affected pathways as potential druggable targets in COVID-19 pathogenesis.
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  • 文章类型: Journal Article
    严重急性呼吸道综合征冠状病毒2(SARS-CoV-2)是一种高度传染性和致病性病毒,于2019年12月下旬首次出现。这种SARS-CoV-2导致一种称为“冠状病毒传染病-2019”(COVID-19)的急性呼吸道疾病的感染。世界卫生组织(WHO)于2020年3月11日宣布这次SARS-CoV-2疫情是一次大流行。截至2023年1月31日,SARS-CoV-2记录了超过6700万例病例和超过600万人死亡。最近,SARS-CoV的新突变变体也在全球范围内引起了严重的健康问题,未来的小说变体仍然神秘。由于SARS-CoV-2的感染病例每天都在增加,科学家正在尝试使用多种抗病毒药物和针对SARS-CoV-2的疫苗来对抗这种疾病。据我们所知,这是第一次全面总结SARS-CoV-2传播的动态性质,SARS-CoV-2变体(关注的变体和感兴趣的变体),对SARS-CoV-2使用的抗病毒药物和疫苗一目了然。希望,这篇综述将使研究人员获得关于SARS-CoV-2变体和疫苗的知识,这也将为确定针对即将到来的SARS-CoV-2菌株的有效新型疫苗铺平道路。
    Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a highly contagious and pathogenic virus that first appeared in late December 2019. This SARS-CoV-2 causes an infection of an acute respiratory disease called \"coronavirus infectious disease-2019 (COVID-19). The World Health Organization (WHO) declared this SARS-CoV-2 outbreak a great pandemic on March 11, 2020. As of January 31, 2023, SARS-CoV-2 recorded more than 67 million cases and over 6 million deaths. Recently, novel mutated variants of SARS-CoV are also creating a serious health concern worldwide, and the future novel variant is still mysterious. As infection cases of SARS-CoV-2 are increasing daily, scientists are trying to combat the disease using numerous antiviral drugs and vaccines against SARS-CoV-2. To our knowledge, this is the first comprehensive review that summarized the dynamic nature of SARS-CoV-2 transmission, SARS-CoV-2 variants (a variant of concern and variant of interest), antiviral drugs and vaccines utilized against SARS-CoV-2 at a glance. Hopefully, this review will enable the researcher to gain knowledge on SARS-CoV-2 variants and vaccines, which will also pave the way to identify efficient novel vaccines against forthcoming SARS-CoV-2 strains.
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