RNAi

RNAi
  • 文章类型: Journal Article
    法尼酸甲酯环氧酶(MFE)是编码与少年激素生物合成的最后一步相关的酶的基因。Mn-MFEcDNA的总长度为1695bp,开放阅读框(ORF)长度为1482bp,编码493个氨基酸。序列分析表明,其氨基酸序列具有PPGP铰链,FGCG结构域,和其他对P450家族酶特异的结构域。Mn-MFE在肝胰腺中表达最高,其次是卵巢和ill,在心脏和肌肉组织中弱表达,在眼柄和颅骨神经节中几乎没有表达。Mn-MFE表达在幼虫期保持稳定,在此期间,它主要在性腺分化中起关键作用。卵巢中的表达与卵巢发育呈正相关,肝胰腺中的表达与卵巢发育呈负相关。原位杂交(ISH)显示该信号在卵母细胞中表达,核,细胞膜和滤泡细胞,在O-IV期表达强度最强。与对照组相比,Mn-MFE的击倒导致性腺指数和O-III期卵巢百分比显着降低。然而,实验组和对照组之间的蜕皮累积频率没有差异。此外,实验结束时对卵巢组织切片的分析显示,各组之间的发育速度存在差异,但亚细胞结构没有差异。这些结果表明,Mn-MFE促进了日本沼虾成虫的卵巢发育,但对蜕皮没有影响。
    Methyl farnesoate epoxidase (MFE) is a gene encoding an enzyme related to the last step of juvenile hormone biosynthesis. Mn-MFE cDNA has a total length of 1695 bp and an open reading frame (ORF) length of 1482 bp, encoding 493 amino acids. Sequence analysis showed that its amino acid sequence has a PPGP hinge, an FGCG structural domain, and other structural domains specific to the P450 family of enzymes. Mn-MFE was most highly expressed in the hepatopancreas, followed by the ovary and gill, weakly expressed in heart and muscle tissue, and barely expressed in the eyestalk and cranial ganglion. Mn-MFE expression remained stable during the larval period, during which it mainly played a critical role in gonadal differentiation. Expression in the ovary was positively correlated and expression in the hepatopancreas was negatively correlated with ovarian development. In situ hybridization (ISH) showed that the signal was expressed in the oocyte, nucleus, cell membrane and follicular cells, and the intensity of expression was strongest at stage O-IV. The knockdown of Mn-MFE resulted in a significantly lower gonadosomatic index and percentage of ovaries past stage O-III compared to the control group. However, no differences were found in the cumulative frequency of molting between the experimental and control groups. Moreover, the analysis of ovarian tissue sections at the end of the experiment showed differences between groups in development speed but not in subcellular structure. These results demonstrate that Mn-MFE promotes the ovarian development of Macrobrachium nipponense adults but has no effect on molting.
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  • 文章类型: Journal Article
    骨关节炎(OA)是一种由关节软骨退行性改变引起的慢性疾病,主要表现为软骨退化,软骨下骨重建,以及滑膜炎.在接下来的几十年里,OA及其负担将在全球范围内继续增加,对可预见的未来构成重大公共卫生挑战。OA的治疗包括非药物治疗,药理学,和手术治疗。现有的保守治疗和关节手术只能缓解症状,无法治愈,因此,迫切需要新的OA疗法。由于对OA病理生理学的理解有了进展,研究人员已经确定了一些针对软骨退化的潜在治疗靶点,软骨下骨重塑和滑膜炎症,能够开发改善疾病的OA药物(DMOAD)。此外,一些治疗OA的新技术也在研究中,如RNA干扰(RNAi),CRISPR/Cas9和PROTAC。这篇综述的目的是描述DMOAD的当前发展状况,并讨论治疗OA的新兴治疗方法的潜力,从而为OA治疗提供参考。
    Osteoarthritis (OA) is a chronic disorder caused by degenerative changes in articular cartilage, which are mainly manifests as degeneration of cartilage, subchondral bone remodeling, as well as synovial inflammation. Over the next few decades, OA and its burden will continue to increase worldwide, posing a major public health challenge for the foreseeable future. Treatment for OA includes non-pharmacological, pharmacological, and surgical treatments. Existing conservative treatments and joint surgery can only alleviate the symptoms and cannot be cured, so new therapies for OA are urgently needed. Since advances in the understanding of OA pathophysiology, researchers have identified some potential therapeutic targets against degeneration of cartilage, subchondral bone remodeling and synovial inflammation, enabling development of the disease-modifying OA drugs (DMOADs). Additionally, a number of new technologies are also being investigated for treating OA, such as RNA interference (RNAi), CRISPR/Cas9 and PROTAC. The goal of this review is to describe the current development status of DMOADs and to discuss the potential of emerging therapeutic approaches for treating OA, thus providing a reference for OA treatments.
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  • 文章类型: Journal Article
    背景:卡利巴是新疆草地的主要害虫。滞育越冬策略是该害虫种群众多的重要原因之一。这项研究调查了与滞育释放相关的基因的功能(DIB,JHE和CAM)通过RNA干扰(RNAi)技术辅助其生物防治。
    结果:注射dsDIB12h的卵中DIB及其下游相关基因(EcR和FTZ-F1)的表达水平下降了96.6%,55.8%和81.8%,分别。滞育在第3天开始终止,发育在第6天几乎完成。然而,头部明显变小。dsJHE处理48h后JHE及其下游相关基因(JHEH和VgR)的表达水平下降了76.5%,85.6%和85.9%,分别。滞育的终止发生在孵育的第3天。发育在第6天基本完成,但蛋黄未被完全吸收。dsCAM处理后24hCAM及其下游相关基因(CAMK4和MYL)的表达下降了42.4%,95.3%和82.7%,分别。停育终止在第4天完成,用于孵育,第6天发育异常。卵黄的吸收不完全。
    结论:DIB,JHE和CAM可以在不同程度上延迟意大利卡利巴卵的滞育终止,并可作为其生物防治的潜在靶基因。©2024化学工业学会。
    BACKGROUND: Calliptamus italicus L. is a major pest in Xinjiang grassland. The diapause overwintering strategy is one of the important reasons for the large population of this pest. This study investigated the function of the genes associated with the release of diapause (DIB, JHE and CAM) in Calliptamus italicus by RNA interference (RNAi) technology to aid in its biological control.
    RESULTS: The expression levels of DIB and its downstream-associated genes (EcR and FTZ-F1) in the eggs injected with dsDIB for 12 h decreased by 96.6%, 55.8% and 81.8%, respectively. Diapause began to terminate on day 3, and development was almost complete on day 6. However, the head was significantly smaller. The expression levels of JHE and its downstream-associated genes (JHEH and VgR) at 48 h after dsJHE treatment decreased by 76.5%, 85.6% and 85.9%, respectively. The termination of diapause occured on day 3 of incubation. The development was basically complete on day 6, but the yolk had been incompletely absorbed. The expression of CAM and its downstream-associated genes (CAMK4 and MYL) at 24 h after dsCAM treatment decreased by 42.4%, 95.3% and 82.7%, respectively. Diapause termination was completed on day 4 for incubation, and development was abnormal on day 6. The absorption of yolk was incomplete.
    CONCLUSIONS: DIB, JHE and CAM can delay the diapause termination of Calliptamus italicus eggs to different degrees and can be developed as potential target genes for its biological control. © 2024 Society of Chemical Industry.
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  • 文章类型: Journal Article
    背景:多能干细胞分化为所需谱系是再生医学和基于细胞的治疗的关键方面。尽管RNA干扰(RNAi)技术被广泛用于此,导致分化的靶基因的长期沉默方法仍然是一个挑战。由于递送效率低,RNAi对靶基因的持续敲除通常效率低下。方案引起与病毒载体相关的毒性和安全性问题。早些时候,我们建立了八精氨酸功能化的羟基磷灰石纳米载体(R8HNP),用于在小鼠胚胎干细胞中递送针对多能性标记基因的小干扰RNA(siRNA)。尽管我们证明了靶基因的优秀敲除效率,导致分化的持续基因沉默尚未实现.
    方法:为了建立使用R8HNP的持续非病毒基因沉默方案,我们研究了siRNA递送的各种方法:粘附细胞的双重递送(Adh-D),悬浮递送,然后粘附递送(Susp+Adh),暂停单交货(Susp-S)和暂停多交货(Susp-R)。通过逆转录酶-PCR分析了多能标记基因的持续敲除,然后进行分化。荧光激活细胞分选和免疫荧光技术。还测试了重复暴露R8HNP对细胞活力的影响。
    结果:在测试的方案中,通过重复悬浮递送R8HNP-siRNA缀合物,获得了长时间最有效的靶基因敲低.多能性标记基因的长期沉默导致R1ESC主要向胚胎外和外胚层谱系分化。细胞对R8HNP的重复暴露表现出优异的耐受性。
    结论:结果表明,R8HNP是有希望的,生物相容性用于延长基因沉默和获得用于治疗的分化细胞的非病毒替代品。
    BACKGROUND: Differentiation of pluripotent stem cells into desired lineages is the key aspect of regenerative medicine and cell-based therapy. Although RNA interference (RNAi) technology is exploited extensively for this, methods for long term silencing of the target genes leading to differentiation remain a challenge. Sustained knockdown of the target gene by RNAi is often inefficient as a result of low delivery efficiencies, protocol induced toxicity and safety concerns related to viral vectors. Earlier, we established octa-arginine functionalized hydroxyapatite nano vehicles (R8HNPs) for delivery of small interfering RNA (siRNA) against a pluripotency marker gene in mouse embryonic stem cells. Although we demonstrated excellent knockdown efficiency of the target gene, sustained gene silencing leading to differentiation was yet to be achieved.
    METHODS: To establish a sustained non-viral gene silencing protocol using R8HNP, we investigated various methods of siRNA delivery: double delivery of adherent cells (Adh-D), suspension delivery followed by adherent delivery (Susp + Adh), single delivery in suspension (Susp-S) and multiple deliveries in suspension (Susp-R). Sustained knockdown of a pluripotent marker gene followed by differentiation was analysed by reverse transcriptase-PCR, fluoresence-activated cell sorting and immunofluorescence techniques. Impact on cell viability as a result of repeated exposure of the R8HNP was also tested.
    RESULTS: Amongst the protocols tested, the most efficient knockdown of the target gene for a prolonged period of time was obtained by repeated suspension delivery of the R8HNP-siRNA conjugate. The long-term silencing of a pluripotency marker gene resulted in differentiation of R1 ESCs predominantly towards the extra embryonic and ectodermal lineages. Cells displayed excellent tolerance to repeated exposures of R8HNPs.
    CONCLUSIONS: The results demonstrate that R8HNPs are promising, biocompatible, non-viral alternatives for prolonged gene silencing and obtaining differentiated cells for therapeutics.
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  • 文章类型: Journal Article
    我们强调了最近5年的研究,这些研究有助于我们理解昆虫中RNA干扰(RNAi)的机制。自从它第一次被发现,RNAi作为功能基因组研究的反向遗传工具做出了巨大贡献。RNAi也被用于治疗,以及农作物和牲畜的生产和保护。然而,为了RNAi的广泛应用,需要改进其效力和递送技术。对RNAi的每一步都有机械的理解,从RNAi触发分子的细胞摄取到靶向的mRNA降解,是制定改进RNAi技术的有效策略的关键。由于RNAi效率的物种特异性变化,昆虫为研究RNAi的机制提供了极好的模型。这使我们能够在具有不同RNAi敏感性的昆虫物种中进行比较研究。了解RNAi在不同昆虫中的机制可以导致开发更好的策略来改善RNAi及其在管理农业和医学上重要的昆虫中的应用。
    We highlight the recent 5 years of research that contributed to our understanding of the mechanisms of RNA interference (RNAi) in insects. Since its first discovery, RNAi has contributed enormously as a reverse genetic tool for functional genomic studies. RNAi is also being used in therapeutics, as well as agricultural crop and livestock production and protection. Yet, for the wider application of RNAi, improvement of its potency and delivery technologies is needed. A mechanistic understanding of every step of RNAi, from cellular uptake of RNAi trigger molecules to targeted mRNA degradation, is key for developing an efficient strategy to improve RNAi technology. Insects provide an excellent model for studying the mechanism of RNAi due to species-specific variations in RNAi efficiency. This allows us to perform comparative studies in insect species with different RNAi sensitivity. Understanding the mechanisms of RNAi in different insects can lead to the development of better strategies to improve RNAi and its application to manage agriculturally and medically important insects.
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  • 文章类型: Journal Article
    RNA干扰(RNAi)是基因功能研究不可或缺的工具,并已通过广泛的研究证实了其在杆状病毒表达载体系统(BEVS)中的实际应用。本章通过在方案中包括小干扰RNA(siRNA)来扩展昆虫细胞培养中的RNAi工具包,除了常规使用双链RNA(dsRNA)。本章还提请注意关键的设计和报告考虑因素,基于关于RNAi实验(MIARE)指南的最低信息。提供了有关dsRNA和siRNA设计的在线工具的建议,以及选择合适的方法来测量沉默结果的指导。
    RNA interference (RNAi) serves as an indispensable tool for gene function studies and has been substantiated through extensive research for its practical applications in the baculovirus expression vector system (BEVS). This chapter expands the RNAi toolkit in insect cell culture by including small interfering RNA (siRNA) in the protocol, in addition to the conventional use of double-stranded RNA (dsRNA). This chapter also brings attention to key design and reporting considerations, based on Minimum Information About an RNAi Experiment (MIARE) guidelines. Recommendations regarding online tools for dsRNA and siRNA design are provided, along with guidance on choosing suitable methods for measuring silencing outcomes.
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  • 文章类型: Journal Article
    尽管在理解和应用基因沉默机制以及人类疾病的治疗方面取得了重大进展,在治疗应用中仍然存在一些障碍。第一次,ONPATTRO,2018年发明了第一种基于小干扰RNA(siRNA)的药物,用于治疗多发性神经病的hTTR。此外,另外四种基于siRNA的药物命名为吉沃西兰,Inclisiran,Lumasiran,迄今为止,Vutrisiran和Vutrisiran已被美国食品和药物管理局和欧洲药品管理局批准用于临床使用。在这次审查中,我们已经讨论了基于siRNA的药物在临床前和临床阶段的关键和有希望的进展,这些分子在细菌和病毒感染疾病中的影响,交付系统问题,管理方法的影响,siRNA应用的局限性以及如何克服它们以及对未来发展的一瞥。
    While significant progress has been made in understanding and applying gene silencing mechanisms and the treatment of human diseases, there have been still several obstacles in therapeutic use. For the first time, ONPATTRO, as the first small interfering RNA (siRNA) based drug was invented in 2018 for treatment of hTTR with polyneuropathy. Additionally, four other siRNA based drugs naming Givosiran, Inclisiran, Lumasiran, and Vutrisiran have been approved by the US Food and Drug Administration and the European Medicines Agency for clinical use by hitherto. In this review, we have discussed the key and promising advances in the development of siRNA-based drugs in preclinical and clinical stages, the impact of these molecules in bacterial and viral infection diseases, delivery system issues, the impact of administration methods, limitations of siRNA application and how to overcome them and a glimpse into future developments.
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  • 文章类型: Journal Article
    尽管有疫苗,但有效的治疗方法对于控制严重的COVID-19疾病是必要的。小干扰RNA(siRNA)可以沉默病毒基因并限制SARS-CoV-2的复制。细胞穿透肽是用于siRNA递送的稳健方法,增强siRNA稳定性和靶向特异性受体。我们开发了一种肽HE25,通过各种机制阻断SARS-CoV-2的复制,包括参与病毒内化的多种受体的结合,如ACE2、整合素和NRP1。HE25不仅充当将SARS-CoV-2RNA依赖性RNA聚合酶siRNA递送到细胞中的载体,而且还通过胞吞作用促进其内化。一旦进入内体,siRNA通过组氨酸-质子海绵效应和组织蛋白酶B对HE25的选择性裂解释放到细胞质中。这些机制在体外有效抑制了祖先SARS-CoV-2和Omicron变体BA.5的复制。当HE25在体内给药时,无论是静脉注射还是吸入,它积聚在肺中,静脉和动脉,内皮,或支气管结构取决于路线。此外,siRNA/HE25复合物在体外引起肺细胞中的基因沉默。SARS-CoV-2siRNA/HE25复合物是COVID-19的一种有前途的治疗方法,可以采用类似的策略来对抗未来新出现的病毒性疾病。
    Effective therapeutics are necessary for managing severe COVID-19 disease despite the availability of vaccines. Small interfering RNA (siRNA) can silence viral genes and restrict SARS-CoV-2 replication. Cell-penetrating peptides is a robust method for siRNA delivery, enhancing siRNA stability and targeting specific receptors. We developed a peptide HE25 that blocks SARS-CoV-2 replication by various mechanisms, including the binding of multiple receptors involved in the virus\'s internalization, such as ACE2, integrins and NRP1. HE25 not only acts as a vehicle to deliver the SARS-CoV-2 RNA-dependent RNA polymerase siRNA into cells but also facilitates their internalization through endocytosis. Once inside endosomes, the siRNA is released into the cytoplasm through the Histidine-proton sponge effect and the selective cleavage of HE25 by cathepsin B. These mechanisms effectively inhibited the replication of the ancestral SARS-CoV-2 and the Omicron variant BA.5 in vitro. When HE25 was administered in vivo, either by intravenous injection or inhalation, it accumulated in lungs, veins and arteries, endothelium, or bronchial structure depending on the route. Furthermore, the siRNA/HE25 complex caused gene silencing in lung cells in vitro. The SARS-CoV-2 siRNA/HE25 complex is a promising therapeutic for COVID-19, and a similar strategy can be employed to combat future emerging viral diseases.
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  • 文章类型: Journal Article
    疟疾是历史上最致命的传染病之一,夺去了大量的生命。恶性疟原虫的基因组可塑性,最严重和最致命的疟疾的病原体,使寄生虫对开发用于控制其的药物具有恒定的抵抗力。尽管努力控制甚至根除这种疾病,由于寄生虫的持续适应,这些方法在很大程度上是不成功的。这项研究旨在研究与寄生虫抗性有关的关键基因,并提出战斗策略的转变。基因沉默技术为抗击疟疾提供了希望,然而,还需要进一步的研究来充分利用他们的潜力来控制疾病。尽管实施基于基因沉默的治疗策略还有很长的路要走,这篇综述讨论了在各种人类疾病中使用此类技术的例子,以及如何将其推断为疟疾治疗。
    Malaria has been one of the most lethal infectious diseases throughout history, claiming a high number of human lives. The genomic plasticity of Plasmodium falciparum, the causative agent of the most severe and deadly form of malaria, gives the parasite a constant resistance to drugs developed for its control. Despite efforts to control and even eradicate the disease, these have largely been unsuccessful due to the parasite\'s continuous adaptations. This study aims to examine the key genes involved in parasite resistance and propose a shift in the combat strategy. Gene silencing techniques offer promise in combating malaria, yet further research is needed to harness their potential for disease control fully. Although there is still a long way to go for the implementation of gene silencing-based therapeutic strategies, this review addresses examples of the use of such techniques in various human diseases and how they could be extrapolated for malaria treatment.
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  • 文章类型: Journal Article
    蛋白酶体26S亚基,非ATP酶9(psmd9)在精子发生过程中对鱼精蛋白的平衡和核仁结构的稳定性起着重要作用。在这项研究中,我们克隆了半舌兰的psmd9,并分析了其表达模式。PSMD9在C.semilaevis的Z染色体上鉴定,它被认为是精子发生的一个有趣的候选基因。qRT-PCR和FISH实验表明psmd9基因在睾丸中显著高表达。值得注意的是,男性鱼睾丸中psmd9的表达水平明显高于假性鱼。为了进一步探讨psmd9在精子发生中的作用,雄性睾丸细胞系被用作实验材料。psmd9-RNAi和过表达实验结果表明,psmd9与精子发生相关基因dnd1、cfap69、dnah3和dnajb13有协同作用,但对ccne2有拮抗作用。我们的发现为理解psmd9在半毛精子发生调控网络中的作用提供了科学依据。
    Proteasome 26S Subunit, Non-ATPase 9 (psmd9) plays an important role in the balance of protamine and the stability of the nucleolar structure during spermatogenesis. In this study, we cloned the psmd9 of Cynoglossus semilaevis and analyzed its expression pattern. psmd9 was identified on the Z chromosome of C. semilaevis, which is considered an interesting candidate gene for spermatogenesis. qRT-PCR and FISH experiments showed that the psmd9 gene was significantly highly expressed in the testes. It is worth noting that the expression level of psmd9 in male fish testes is significantly higher than that in pseudomales. In order to further explore the role of psmd9 in spermatogenesis, a male testicular cell line was used as the experimental material. The results of the psmd9-RNAi and overexpression experiments showed that psmd9 had a synergistic effect with spermatogenesis-related genes dnd1, cfap69, dnah3 and dnajb13, but had an antagonistic effect with ccne2. Our findings offer a scientific foundation for comprehending the role of psmd9 in the spermatogenesis regulatory network of C. semilaevis.
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