REACTIVITY

反应性
  • 文章类型: Journal Article
    碳低价氧化物的电子结构,C3O2,最近被描述为OC→C-CO,在中心碳原子上有两个孤对电子,因此称为“Carbones”。尽管它具有线性几何形状,当用两个质子分析其反应性时,出现了两个孤对子的存在。然而,尚未注意其与氢化物离子的交替反应性。在这里,详细的量子化学计算预测碳低价氧化物也可以具有显著的氢化物离子亲和力。该反应性与低氧化碳的σ0π2卡宾特征一致。这项研究还表明,这种σ0π2卡宾特征在碳二膦中也很普遍,C(PH3)2。迄今为止,在“Carbone”化学中尚未探索这种结合情况。
    Electronic structure of carbon suboxide, C3O2, has been recently described as OC→C←CO having two lone pairs at the central carbon atom, thereby called as \"Carbones\". Although it has a linear geometry, the presence of two lone pairs comes to fore when its reactivity is analyzed with two protons. However, no attention had been paid on its alternating reactivity with hydride ions. Herein, detailed quantum chemical calculations predict that carbon suboxide can also have significant hydride ion affinity. This reactivity is in tune with σ0π2 carbene character of carbon suboxide. This study also shows that such a σ0π2 carbene character is also prevalent in carbodiphosphorane, C(PH3)2. This bonding situation has been hitherto unexplored in \"Carbone\" chemistry.
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  • 文章类型: Journal Article
    背景:在本文中,我们采用了最近的主张,在Kohn-Sham分子轨道上使用费米-狄拉克型种群方案,以适应与热化电极相互作用的情况。这可以得出一个基本的非线性方程,该方程将电极的化学势与转移到所研究系统的电荷量联系起来,因此允许量化的倾向,电荷转移(亲)。该方法适用于大量常见的亲电体和亲核体,显示出与更多标准亲性描述符的良好关系。通过这种方法也重新审视了化学硬度。
    方法:使用高斯16软件包在理论的M062X/aug-cc-pvtz水平下进行所有计算。然后通过Python3专用程序(依靠SciPy软件包中的fsolve数值求解器)进行数据分析,使用高斯输出文件,并作为补充材料提供。
    BACKGROUND: In this article, we adapt a recent proposition to use a Fermi-Dirac-type population scheme on Kohn-Sham molecular orbitals to the case of an interaction with a thermalised electrode. This allows to derive a fundamental non-linear equation linking the chemical potential of the electrode and the amount of charge transferred to the system under study, hence allows to quantify the propensity to charge transfer (philicity). This methodology is applied to a large set of common electrophiles and nucleophiles, showing decent relation with more standard philicity descriptors. Chemical hardness is also revisited by this approach.
    METHODS: All calculations were performed using the Gaussian 16 software package at the M062X/aug-cc-pvtz level of theory. Data analysis was then performed through a Python3 dedicated program (relying on the fsolve numerical solver from the SciPy package), using Gaussian output files, and available as supplementary material.
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  • 文章类型: Journal Article
    磺基转移酶(SULTs)是主要的II期代谢酶类别,对FDA批准的药物的II期代谢贡献约20%。忽略SULT介导的代谢的潜力会导致药物-药物相互作用的强大潜力,经常导致后期药物发现失败或FDA标签上的黑盒警告。现有模型仅使用可访问性描述符和机器学习(ML)方法来进行SULT的磺化类别和站点(SOS)预测。在这项研究中,各种可达性,反应性,并开发了混合模型和算法来进行准确的底物和SOS预测。与文献模型不同,脂族或芳族羟基(R/Ar-O-H)的反应性参数,对于SOS预测,债券解离能量(BDE)给出了真实阳性率(TPR)=0.84的准确模型。我们提供了机械论的见解来解释这些在文献中没有认识到的新发现。可达性参数,例如Chemgauss4评分(CGS)和分子量(MW)CGS/MW的比率以及与辅因子的距离(Dis)对于类别预测至关重要,并显示TPR=0.72。基质的BDE含量一直较低,Dis,和CGS/MW比非底物。混合模型对于SOS预测也是可以接受的。使用最好的模型,算法在类别预测中给出了可接受的性能:TPR=0.62,假阳性率(FPR)=0.24,平衡精度(BA)=0.69,SOS预测:TPR=0.98,FPR=0.60,BA=0.69。添加了基于规则的方法来提高预测性能,改进了算法TPR,FPR,和BA。对于最佳算法,使用药物样化合物的外部数据集的验证给出类别预测:TPR=0.67,FPR=0.00,和SOS预测:TPR=0.80和FPR=0.44。与标准ML模型的比较还表明,我们的算法对外部数据集的分类显示出更高的预测性能。总的来说,这些模型和算法(SOS预测器)为SULT介导的II期代谢提供了准确的底物类别和位点(SOS)预测,对学术界和工业界的药物发现界将是有价值的.SOS预测器可通过GitHub链接免费用于学术/非营利研究。
    Sulphotransferases (SULTs) are a major phase II metabolic enzyme class contributing ~20 % to the Phase II metabolism of FDA-approved drugs. Ignoring the potential for SULT-mediated metabolism leaves a strong potential for drug-drug interactions, often causing late-stage drug discovery failures or black-boxed warnings on FDA labels. The existing models use only accessibility descriptors and machine learning (ML) methods for class and site of sulfonation (SOS) predictions for SULT. In this study, a variety of accessibility, reactivity, and hybrid models and algorithms have been developed to make accurate substrate and SOS predictions. Unlike the literature models, reactivity parameters for the aliphatic or aromatic hydroxyl groups (R/Ar-O-H), the Bond Dissociation Energy (BDE) gave accurate models with a True Positive Rate (TPR)=0.84 for SOS predictions. We offer mechanistic insights to explain these novel findings that are not recognized in the literature. The accessibility parameters like the ratio of Chemgauss4 Score (CGS) and Molecular Weight (MW) CGS/MW and distance from cofactor (Dis) were essential for class predictions and showed TPR=0.72. Substrates consistently had lower BDE, Dis, and CGS/MW than non-substrates. Hybrid models also performed acceptablely for SOS predictions. Using the best models, Algorithms gave an acceptable performance in class prediction: TPR=0.62, False Positive Rate (FPR)=0.24, Balanced accuracy (BA)=0.69, and SOS prediction: TPR=0.98, FPR=0.60, and BA=0.69. A rule-based method was added to improve the predictive performance, which improved the algorithm TPR, FPR, and BA. Validation using an external dataset of drug-like compounds gave class prediction: TPR=0.67, FPR=0.00, and SOS prediction: TPR=0.80 and FPR=0.44 for the best Algorithm. Comparisons with standard ML models also show that our algorithm shows higher predictive performance for classification on external datasets. Overall, these models and algorithms (SOS predictor) give accurate substrate class and site (SOS) predictions for SULT-mediated Phase II metabolism and will be valuable to the drug discovery community in academia and industry. The SOS predictor is freely available for academic/non-profit research via the GitHub link.
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  • 文章类型: Journal Article
    皮肤致敏是安全性评估的关键终点,尤其是化妆品和个人护理产品。皮肤致敏的不良结果途径和驱动诱导人皮肤致敏的化学和生物事件现在已经很好地理解。已经开发了几种非动物测试方法来通过测量化学敏化剂对这些关键事件的影响来预测敏化剂潜力。在这项工作中,我们专注于关键事件1(分子启动步骤),其基于皮肤致敏剂与皮肤中的内源性蛋白质和/或肽之间的共价加合物的形成。存在三种经经济合作与发展组织批准的化学内测定法-(1)直接肽反应性测定法(DPRA),(2)氨基酸衍生物反应性测定(ADRA),和(3)动力学直接肽反应性测定(kDPRA),以定量用测试化学品孵育后的肽/氨基酸衍生物消耗。然而,由于硫醇基团的二聚化,基于半胱氨酸的肽/氨基酸衍生物的过高估计的消耗在这样的测定中是已知的。在目前的工作中,我们报道了来自ADRA测定的N-(2-[1-萘基]乙酰基)-L-半胱氨酸(NAC)二聚体的合成和结构确认,以允许同时测定(a)通过定量NAC单体的肽耗竭和(b)通过定量NAC二聚体的肽二聚化,从而消除高估.我们提供了三种化学物质的案例研究,以证明这种方法的重要性。因此,这种同时测定提供了一个更明智的观点的肽反应的化学品,以更好地识别皮肤致敏剂。
    Skin sensitization is a key endpoint for safety assessment, especially for cosmetics and personal care products. The adverse outcome pathway for skin sensitization and the chemical and biological events driving the induction of human skin sensitization are now well understood. Several non-animal test methods have been developed to predict sensitizer potential by measuring the impact of chemical sensitizers on these key events. In this work, we have focused on Key Event 1 (the molecular initiating step), which is based on formation of a covalent adduct between skin sensitizers and endogenous proteins and/or peptides in the skin. There exists three in-chemico assays approved by the Organization for Economic Co-operation and Development-(1) Direct Peptide Reactivity Assay (DPRA), (2) Amino Acid Derivative Reactivity Assay (ADRA), and (3) Kinetic Direct Peptide Reactivity Assay (kDPRA) to quantify peptide/amino acid derivative depletion after incubation with test chemicals. However, overestimated depletion of the cysteine-based peptide/amino acid derivatives is known in such assays because of the dimerization of the thiol group. In this present work, we report the synthesis and structural confirmation of the dimer of N-(2-[1-naphthyl]acetyl)-L-cysteine (NAC) from the ADRA assay to allow simultaneous determination of (a) peptide depletion by quantifying NAC monomer and (b) peptide dimerization by quantifying NAC dimer thereby eliminating the overestimation. We present a case study with three chemicals to demonstrate the importance of this approach. Thus, this simultaneous assay gives a more informed view of the peptide reactivity of chemicals to better identify skin sensitizers.
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  • 文章类型: Journal Article
    已知反应性星形胶质细胞在几种神经退行性疾病中对神经元产生有害影响。然而,我们对星形胶质细胞如何促进神经毒性的理解仍然不完整,尤其是在人类系统中。在这项研究中,我们利用人多能干细胞(hPSC)模型来研究反应性如何改变星形胶质细胞功能和介导神经变性.hPSC来源的星形胶质细胞被诱导为反应表型,在这一点上,他们表现出肥大的概况和增加的补体C3表达。功能上,反应性星形胶质细胞显示细胞内钙减少,吞噬能力升高,和减少对血脑屏障的贡献。随后,反应性星形胶质细胞与多种神经元细胞类型的共培养促进了形态和功能改变。此外,当在来自患者特异性hPSC的星形胶质细胞中诱导反应性时(青光眼,老年痴呆症,和肌萎缩侧索硬化症),反应状态加剧了星形细胞疾病相关表型.这些结果表明反应性星形胶质细胞如何调节神经变性,大大有助于我们理解反应性星形胶质细胞在神经退行性疾病中的作用。
    Reactive astrocytes are known to exert detrimental effects upon neurons in several neurodegenerative diseases, yet our understanding of how astrocytes promote neurotoxicity remains incomplete, especially in human systems. In this study, we leveraged human pluripotent stem cell (hPSC) models to examine how reactivity alters astrocyte function and mediates neurodegeneration. hPSC-derived astrocytes were induced to a reactive phenotype, at which point they exhibited a hypertrophic profile and increased complement C3 expression. Functionally, reactive astrocytes displayed decreased intracellular calcium, elevated phagocytic capacity, and decreased contribution to the blood-brain barrier. Subsequently, co-culture of reactive astrocytes with a variety of neuronal cell types promoted morphological and functional alterations. Furthermore, when reactivity was induced in astrocytes from patient-specific hPSCs (glaucoma, Alzheimer\'s disease, and amyotrophic lateral sclerosis), the reactive state exacerbated astrocytic disease-associated phenotypes. These results demonstrate how reactive astrocytes modulate neurodegeneration, significantly contributing to our understanding of a role for reactive astrocytes in neurodegenerative diseases.
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  • 文章类型: Journal Article
    锰配合物表现出丰富的氧化还原化学,通常伴随着氧化还原过程中的结构重组,通常伴随着配体解离或缔合。推拉配体2,6-二胍基吡啶(dgpy)将锰稳定在氧化态II,+III,和配合物[Mn(dgpy)2]n(n=2-4)中的IV,凝聚相中的配位球没有变化[Heinze等人。,无机化学,2022,61,14616]。在凝聚阶段,锰(IV)络合物是非常强的氧化剂。在目前的工作中,我们研究了MnIV络合物及其反离子(PF6-)加合物在气相中的稳定性和氧化还原活性,使用两个改进的3DPaul离子阱质谱仪。[Mnx(dgpy)2(PF6)y]n(x=II,III,IV,对于三种氧化态MnIV,可以观察到y=0-3,n=1-3),MnIII,和MnII,其中一个观察到的络合物还含有还原的dgpy配体。MnII物种在碰撞诱导解离和UV/vis光解离实验中显示出最高的相对稳定性。在一种或多种抗衡离子的存在下观察到最低的稳定性,这与较低的总电荷n+相关。气相UV/vis光谱显示出与凝聚相光谱相似的特征,仅在相对谱带强度上有所不同。强氧化性MnIV络合物在气相中与三乙胺(NEt3)反应生成MnIII,而MnIII物种对NEt3几乎没有反应性。
    Manganese complexes exhibit a rich redox chemistry, usually accompanied by structural reorganization during the redox processes often followed by ligand dissociation or association. The push-pull ligand 2,6-diguanidylpyridine (dgpy) stabilizes manganese in the oxidation states +II, +III, and + IV in the complexes [Mn(dgpy)2]n+ (n = 2-4) without change in the coordination sphere in the condensed phase [Heinze et al., Inorganic Chemistry, 2022, 61, 14616]. In the condensed phase, the manganese(IV) complex is a very strong oxidant. In the present work, we investigate the stability and redox activity of the MnIV complex and its counterion (PF6-) adducts in the gas phase, using two modified 3D Paul ion trap mass spectrometers. Six different cationic species of the type [Mnx(dgpy)2(PF6)y]n+ (x = II, III, IV, y = 0-3, n = 1-3) could be observed for the three oxidation states MnIV, MnIII, and MnII, of which one observed complex also contains a reduced dgpy ligand. MnII species showed the highest relative stability in collision induced dissociation and UV/vis photo dissociation experiments. The lowest stability is observed in the presence of one or more counterions, which correlates to a lower total charge n+. Gas phase UV/vis spectra show similar features as the condensed phase spectra only differing in relative band intensities. The strongly oxidizing MnIV complex reacts with triethylamine (NEt3) in the gas phase to give MnIII, while MnIII species show little reactivity toward NEt3.
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  • 文章类型: Journal Article
    最近在构建单线态氧(1O2)为主的催化氧化系统方面做出了巨大的努力,以选择性地去除废水中的有机污染物。过氧化物作为化学来源。然而,1O2在去除污染物中的相关性仍然模棱两可,需要阐明。在这项研究中,我们严格排除了各种过氧单硫酸盐(PMS)活化系统中1O2在污染物降解中的重要作用。多个实验结果表明,CuO催化PMS活化,MnO2,Fe掺杂g-C3N4(Fe-CN),或N掺杂石墨不主要遵循1O2途径。更重要的是,1O2的反应性在文献中被大大高估了,鉴于其降解一系列杂环污染物和具有吸电子基团的芳族化合物的能力较差。此外,水的强烈物理淬火作用,再加上1O2的氧化能力低,会显著降低过氧化物的利用效率,这在微污染物的降解中尤为明显。我们认为,这项研究有望结束与1O2在污染物去除中的相关性有关的长期争议。
    Significant efforts have recently been exerted toward construction of singlet oxygen (1O2)-dominated catalytic oxidation systems for selective removal of organic contaminants from wastewater, with peroxides serving as the chemical source. However, the relevance of 1O2 in the removal of pollutants remains ambiguous and requires elucidation. In this study, we scrupulously exclude the significant role of 1O2 in contaminant degradation in various peroxymonosulfate (PMS) activation systems. Multiple experimental results indicate that the activation of PMS catalyzed by CuO, MnO2, Fe-doped g-C3N4 (Fe-CN), or N-doped graphite does not predominantly follow the 1O2 pathway. More importantly, the reactivity of 1O2 is remarkably overestimated in the literature, given its inferior capacity in degradation of a range of heterocyclic contaminants and aromatic compounds possessing electron-withdrawing groups. In addition, the strong physical quenching effect of water, coupled with the low oxidizing ability of 1O2, would notably reduce the utilization efficiency of peroxide, which is particularly apparent in the degradation of micropollutants. We reckon that this study is expected to end the long-running dispute associated with the relevance of 1O2 in pollutant removal.
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  • 文章类型: Journal Article
    了解金属富勒烯的外表面反应性对于其在各个领域的应用至关重要。通过系统地控制富勒烯内部的捕获物质,可以抑制其反应性。在这项工作中,我们报告了与中性和双阴离子笼相比,C36笼内3d金属原子的优先位置及其对外面反应性的影响。丁二烯与所有非当量[5-5]之间的Diels-Alder(DA)反应,[6-5]和[6-6]富勒烯笼上的C-C键被考虑用于分析,通过在S12g/TZ2P水平上使用密度泛函理论,包括COSMO溶剂化模型来阐明完整的机理途径。我们的结果表明,金属离子的优先位置在靠近上六边形的位置,键反应性的总体趋势遵循[5-5]>[6-5]>[6-6]的顺序。此外,金属原子的封装进一步增强了这些键的反应性,通过扭曲系统并使整个笼子中的LUMO离域。
    Understanding the exohedral reactivity of metallofullerenes is crucial for its application in various fields. By systematically controlling the trapped species inside the fullerene its reactivity can be tamed. In this work we report the preferential position of 3d metal atoms inside the C36 cage and their effect on exohedral reactivity in comparison with the neutral and the dianionic cage. The Diels-Alder (DA) reaction between butadiene and all non-equivalent [5-5], [6-5] and [6-6] C-C bonds on the fullerene cage was considered for the analysis, by using density functional theory at the S12g/TZ2P level including COSMO solvation model to elucidate the complete mechanistic pathways. Our results indicate that the preferential position of the metal ion is at the position close to the upper hexagon, and that the general trend in the reactivity of bonds follows the order [5-5] > [6-5] > [6-6]. Moreover, the encapsulation of metal atoms further enhances the reactivity of these bonds, by distorting the system and delocalizing the LUMOs all over the cage.
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  • 文章类型: Journal Article
    目的:评估非高度恶性和反应性EEG的预后能力,以预测心脏骤停(CA)后的良好结局。
    方法:“院外心脏骤停试验后目标低温与目标正常体温”的前瞻性观察多中心子研究,也称为TTM2试验。前瞻性地评估和报告了是否存在高度恶性的EEG模式以及EEG对外部刺激的反应性。高度恶性模式被定义为有或没有叠加的周期性放电的爆发抑制或抑制。在CA后96小时进行多峰预测。6个月时的良好结果定义为0-3的改良Rankin量表评分。
    结果:59个地点的873名昏迷患者在住院期间进行了脑电图评估。其中,283(32%)有良好的结果。在CA后69小时(IQR47-91)的中位数记录EEG。543例患者中没有高度恶性的EEG模式,其中255例(占队列的29%)保留了EEG反应性。非高度恶性和反应性脑电图具有56%(CI50-61)的敏感性和83%(CI80-86)的特异性来预测良好的结果。与仅评估背景模式而不考虑反应性相比,EEG反应性的存在有助于EEG预测良好结果的特异性(p<0.001)。
    结论:近三分之一的昏迷患者在CA复苏后出现非高度恶性和反应性EEG,这与良好的长期预后相关。应常规进行反应性测试,因为保留的EEG反应性有助于预后表现。
    OBJECTIVE: Assess the prognostic ability of a non-highly malignant and reactive EEG to predict good outcome after cardiac arrest (CA).
    METHODS: Prospective observational multicentre substudy of the \"Targeted Hypothermia versus Targeted Normothermia after Out-of-hospital Cardiac Arrest Trial\", also known as the TTM2-trial. Presence or absence of highly malignant EEG patterns and EEG reactivity to external stimuli were prospectively assessed and reported by the trial sites. Highly malignant patterns were defined as burst-suppression or suppression with or without superimposed periodic discharges. Multimodal prognostication was performed 96 h after CA. Good outcome at 6 months was defined as a modified Rankin Scale score of 0-3.
    RESULTS: 873 comatose patients at 59 sites had an EEG assessment during the hospital stay. Of these, 283 (32%) had good outcome. EEG was recorded at a median of 69 h (IQR 47-91) after CA. Absence of highly malignant EEG patterns was seen in 543 patients of whom 255 (29% of the cohort) had preserved EEG reactivity. A non-highly malignant and reactive EEG had 56% (CI 50-61) sensitivity and 83% (CI 80-86) specificity to predict good outcome. Presence of EEG reactivity contributed (p < 0.001) to the specificity of EEG to predict good outcome compared to only assessing background pattern without taking reactivity into account.
    CONCLUSIONS: Nearly one-third of comatose patients resuscitated after CA had a non-highly malignant and reactive EEG that was associated with a good long-term outcome. Reactivity testing should be routinely performed since preserved EEG reactivity contributed to prognostic performance.
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  • 文章类型: Journal Article
    实验室压力任务对于密切研究受控环境中的应激反应是必要的。然而,根据我们的知识,尚无研究测试参与此类任务是否会对日常生活造成任何不利影响。53名健康参与者(46名女性)参加了实验室会议,其中使用典型的社会心理应激源引起压力:重复的蒙特利尔成像应激任务(rMIST)。负面影响的平均水平(NA),心率(HR),连续差的均方根(RMSSD),和皮肤电导水平(SCL),以及在实验室会议前四天使用经验采样方法(ESM)测量的所有这些参数的反应性与会议后四天进行了比较。我们还评估了对精神病理学的脆弱性是否缓和了这些关联。研究结果表明,这项任务对参与者没有任何明显的不利影响。然而,任务前后平均RMSSD意外增加,平均SCL下降。此外,与任务之前的几天相比,在任务之后的几天中,更脆弱的个体更有可能经历NA平均水平的增加。我们的发现表明,实验室压力任务可能对更脆弱的个体构成重大风险。
    Laboratory stress tasks are necessary to closely investigate the stress response in a controlled environment. However, to our knowledge, no study has tested whether participating in such tasks can pose any daily life adverse effect. Fifty-three healthy participants (46 women) took part in a laboratory session where stress was induced using a typical psychosocial stressor: the repeated Montreal Imaging Stress Task (rMIST). Average levels of negative affect (NA), heart rate (HR), root mean square of successive differences (RMSSD), and skin conductance level (SCL), as well as reactivity across all these parameters as measured with the experience sampling method (ESM) in the four days prior to the laboratory session were compared with the four days following the session. We also assessed whether vulnerability to psychopathology moderated these associations. Findings showed that the task did not pose any significant adverse effect on participants. However, there was an unexpected increase in average RMSSD and a decrease in average SCL pre- to post- task. In addition, more vulnerable individuals were more likely to experience an increase in average levels of NA in the days following the task compared to the days preceding it. Our findings suggest that laboratory stress tasks may pose a significant risk to more vulnerable individuals.
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